Details of the Researcher

PHOTO

Keita Nishiyama
Section
Graduate School of Agricultural Science
Job title
Associate Professor
Degree
  • 博士(農学)(北里大学)

  • 修士(農学)(北里大学)

Research History 4

  • 2022/10 - Present
    Tohoku University Graduate School of Agricultural Science

  • 2022/04 - 2022/09
    森永乳業株式会社 基礎研究所 研究員

  • 2019/04 - 2022/03
    Keio University School of Medicine, Department of Microbiology and Immunology

  • 2015/04 - 2019/03
    Kitasato University School of Pharmaceutical Sciences

Education 1

  • 北里大学大学院 獣医学系研究科 博士課程修了

    2015/03 -

Committee Memberships 2

  • Bioscience of Microbiota, Food and Health 編集副委員長

    2023 - Present

  • 日本乳酸菌学会 理事、副編集長

    2020 - Present

Professional Memberships 5

  • 日本農芸化学会

    2012 - Present

  • 日本乳酸菌学会

    2010 - Present

  • 日本細菌学会

    2015 -

  • 日本酪農科学会

    2010 -

  • 日本畜産学会

    2010 -

Research Interests 5

  • シアル酸

  • ムチン

  • 消化管定着

  • 乳酸菌

  • Gut microbiome

Research Areas 2

  • Life sciences / Animal production science /

  • Life sciences / Applied microbiology /

Awards 2

  1. 第 36 回 二宮善基記念賞

    2021/06 学校法人北里研究所

  2. 日本酪農科学会 奨励賞

    2017/09 日本酪農科学会 乳酸菌およびビフィズス菌の消化管定着性に関する研究

Papers 48

  1. Milk sialyl-oligosaccharides mediate the early colonization of gut commensal microbes in piglets. International-journal Peer-reviewed

    Ryoga Hashimoto, Keita Nishiyama, Fu Namai, Kasumi Suzuki, Taiga Sakuma, Itsuko Fukuda, Yuta Sugiyama, Kenji Okano, Takafumi Shanoh, Eita Toyoshi, Ryusuke Ohgi, Sudeb Saha, Sae Tsuchida, Eri Nishiyama, Takao Mukai, Mutsumi Furukawa, Tomonori Nochi, Julio Villena, Wakako Ikeda-Ohtsubo, Gou Yoshioka, Eri Nakazaki, Yoshihito Suda, Haruki Kitazawa

    Microbiome 13 (1) 135-135 2025/05/24

    DOI: 10.1186/s40168-025-02129-3  

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    BACKGROUND: The suckling period in pigs is a key phase in development for shaping the gut microbiota, which is essential for maintaining biological homeostasis in neonates. In piglets fed sow milk, the gut microbiota comprises predominantly lactobacilli, indicating a host-gut microbiota symbiosis that is influenced by sow milk components. In this study, we sought to elucidate the mechanisms underlying the establishment and maintenance of the gut microbiome in suckling piglets, with a specific focus on the metabolism of sialyl-oligosaccharides by lactobacilli. RESULTS: Based on liquid chromatography-mass spectrometry analysis, we identified 3'-sialyl-lactose (3'SL) as the major oligosaccharide in porcine milk, and microbiome profiling revealed the predominance of Ligilactobacillus salivarius during the suckling period, with a subsequent transition to Limosilactobacillus reuteri dominance post-weaning. Notably, sialic acid metabolism was established to be exclusively attributable to L. salivarius, thereby highlighting the pivotal role of 3'SL in determining species-specific bacterial segregation. L. salivarius was found to metabolize 3'SL when co-cultured with Bacteroides thetaiotaomicron, resulting in a shift in the predominant short-chain fatty acid produced, from lactate to acetate. This metabolic shift, in turn, inhibits the growth of enterotoxigenic Escherichia coli. Furthermore, the comparison of the gut microbiota between suckling piglets and those fed a low-3'SL formula revealed distinct diversity profiles. We accordingly speculate that an absence of sialyl-oligosaccharides in the formula-fed piglets may have restricted the growth of sialic acid-utilizing bacteria such as L. salivarius, thereby leading to a higher abundance of Enterobacteriaceae. CONCLUSIONS: Our findings reveal the influence of sialyl-oligosaccharides in promoting microbial diversity and gut homeostasis, thereby highlighting the importance of sialic acid as a key factor in shaping milk-driven microbial colonization during the early stages of piglet development. Video Abstract.

  2. Modulation of Macrophages TLR4-Mediated Transcriptional Response by Lacticaseibacillus rhamnosus CRL1505 and Lactiplantibacillus plantarum CRL1506 International-journal International-coauthorship Peer-reviewed

    Masahiko Suzuki, Ayelen Baillo, Leonardo Albarracin, Mariano Elean, Rodrigo Serda, Yoshihito Suda, Fu Namai, Keita Nishiyama, Haruki Kitazawa, Julio Villena

    International Journal of Molecular Sciences 26:2688 (6) 1-26 2025/03/17

    Publisher: MDPI

    DOI: 10.3390/ijms26062688  

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    Lacticaseibacillus rhamnosus CRL1505 and Lactiplantibacillus plantarum CRL1506 increase the resistance of mice to Gram-negative pathogens infections. In this work, we advanced the characterization of the CRL1505 and CRL1506 immunomodulatory properties by evaluating their effect on the Toll-like receptor 4 (TLR4)-triggered immune response in macrophages. We performed experiments in murine RAW 264.7 macrophages stimulated with lipopolysaccharide (LPS) to evaluate the transcriptomic changes induced by lactobacilli. These in vitro experiments were complemented with in vivo studies in mice to determine the effect of CRL1505 and CRL1506 strains on Peyer's patches and peritoneal macrophages. Microarray transcriptomic studies and qPCR confirmation showed that the CRL1505 and CRL1506 strains modulated the expression of inflammatory cytokines and chemokines as well as adhesion molecules in LPS-challenged RAW macrophages, making the effect of L. rhamnosus CRL1505 more remarkable. Lactobacilli also modulate regulatory factors in macrophages. L. plantarum CRL1506 increased il10 and socs2 while L. rhamnosus CRL1505 upregulated il27, socs1, and socs3 in RAW cells, indicating a strain-specific effect. However, in vivo, both strains induced similar effects. Peyer's patches and peritoneal macrophages from mice treated with lactobacilli produced higher levels of tumor necrosis factor (TNF)-α, interferon (IFN)-γ, interleukin (IL)-6, and colony stimulating factor (CSF)-3 after LPS stimulation. This effect would allow improved protection against pathogens. In addition, both lactobacilli equally modulated socs1 and socs2 expressions and IL-10 and IL-27 production in Peyer's patches macrophages and socs3 and IL-10 in peritoneal cells. Furthermore, lactobacilli reduced the production of IL-1β, IL-12, CSF2, C-C motif chemokine ligand (CCL)-2, and CCL8 in LPS-challenged macrophages. This differential modulation of regulatory and inflammatory factors would allow minimal inflammatory-mediated tissue damage during the generation of the innate immune response. This work provides evidence that L. rhamnosus CRL1505 and L. plantarum CRL1506 modulate macrophages' TLR4-mediated immunotranscriptomic response, helping to improve protection against Gram-negative bacterial infections.

  3. Orally Administered Lactobacilli Strains Modulate Alveolar Macrophages and Improve Protection Against Respiratory Superinfection International-journal International-coauthorship Peer-reviewed

    Leonardo Albarracin, Stefania Dentice Maidana, Kohtaro Fukuyama, Mariano Elean, Julio Nicolás, Argañaraz Aybar, Yoshihito Suda, Keita Nishiyama, Haruki Kitazawa*, Julio Villena*

    Biomolecules 14:1600 (12) 1-17 2024/12/14

    Publisher: MDPI

    DOI: 10.3390/biom14121600  

  4. Modulation of the Gut–Lung Axis by Water Kefir and Kefiran and Their Impact on Toll-like Receptor 3-Mediated Respiratory Immunity International-journal International-coauthorship Peer-reviewed

    Stefania Dentice Maidana, Julio Nicolás Argañaraz Aybar, Leonardo Albarracin, Yoshiya Imamura, Luciano Arellano-Arriagada, Fu Namai, Yoshihito Suda, Keita Nishiyama, Julio Villena, Haruki Kitazawa

    Biomolecules 14 (11) 2024/11/17

    Publisher:

    DOI: 10.3390/biom14111457  

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    The beneficial effect of milk kefir on respiratory heath has been previously demonstrated; however, water kefir and kefiran in the context of respiratory viral infections have not been investigated. Water kefir and kefiran could be alternatives to milk kefir for their application in persons with lactose intolerance or milk allergy and could be incorporated into vegan diets. Using mice models, this work demonstrated that the oral administration of water kefir or kefiran can modulate the respiratory Toll-like receptor (TLR3)-mediated innate antiviral immunity and improve the resistance to respiratory syncytial virus (RSV) infection. The treatment of mice with water kefir or kefiran for 6 days improved the production of interferons (IFN-β and IFN-γ) and antiviral factors (Mx2, OAS1, RNAseL, and IFITM3) in the respiratory tract after the activation of the TLR3 signaling pathway, differentially modulated the balance of pro- and anti-inflammatory cytokines, reduced RSV replication, and diminished lung tissue damage. Maintaining a proper balance between anti-inflammatory and pro-inflammatory mediators is vital for ensuring an effective and safe antiviral immune response, and the results of this work show that water kefir and kefiran would help to maintain that balance promoting a controlled inflammatory response that defends against infection while minimizing tissue damage.

  5. Role of immunomodulatory probiotics in alleviating bacterial diarrhea in piglets: a systematic review. International-journal International-coauthorship Peer-reviewed

    Sudeb Saha, Fu Namai, Keita Nishiyama, Julio Villena, Haruki Kitazawa

    Journal of animal science and biotechnology 15:112 (1) 1-25 2024/08/12

    Publisher:

    DOI: 10.1186/s40104-024-01070-z  

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    Diarrhea is a common enteric disease in piglets that leads to high mortality and economic losses in swine production worldwide. Antibiotics are commonly used to prevent or treat diarrhea in piglets. However, irrational antibiotic use contributes to the development of resistance in bacteria and antibiotic residues in animal products, threatening public health, while causing gut microbiota dysbiosis and antibiotic-resistant bacterial infection in piglets. Therefore, the quest for alternative products (such as probiotics, prebiotics, organic acids, enzymes, essential oils, medium-chain fatty acids, zinc, and plant extracts) has recently been clearly emphasized through the increase in regulations regarding antibiotic use in livestock production. These antibiotic alternatives could lower the risk of antibiotic-resistant bacteria and meet consumer demand for antibiotic-free food. Several antibiotic alternatives have been proposed, including immunomodulatory probiotics, as candidates to reduce the need for antimicrobial therapy. Many studies have revealed that probiotics can avert and cure bacterial diarrhea by regulating the gut function and immune system of piglets. In this review, we focus on the major pathogenic bacteria causing piglet diarrhea, the research status of using probiotics to prevent and treat diarrhea, their possible mechanisms, and the safety issues related to the use of probiotics. Supplementation with probiotics is a possible alternative to antibiotics for the prevention or treatment of bacterial diarrhea in piglets. Furthermore, probiotics exert beneficial effects on feed efficiency and growth performance of piglets. Therefore, appropriate selection and strategies for the use of probiotics may have a positive effect on growth performance and also reduce diarrhea in piglets. This review provides useful information on probiotics for researchers, pig nutritionists, and the additive industry to support their use against bacterial diarrhea in piglets.

  6. Exploring strain-level diversity in the gut microbiome through mucin particle adhesion. International-journal

    Keita Nishiyama, Ryuta Murakami, Masaki Nakahata, Binghui Zhou, Nanami Hashikura, Hiroki Kaneko, Fu Namai, Wakako Ikeda-Ohtsubo, Jin-Zhong Xiao, Haruki Kitazawa, Toshitaka Odamaki

    Applied and environmental microbiology 90 (9) e0123524 2024/08/12

    DOI: 10.1128/aem.01235-24  

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    UNLABELLED: Mucin glycoproteins are a significant source of carbon for the gut bacteria. Various gut microbial species possess diverse hydrolytic enzymes and catabolic pathways for breaking down mucin glycans, resulting in competition for the limited nutrients within the gut environment. Adherence to mucin glycans represents a crucial strategy used by gut microbes to access nutrient reservoirs. Understanding these properties is pivotal for comprehending the survival mechanisms of bacteria in the gastrointestinal tract. However, characterization of individual strains within the vast array of coexisting bacteria in the microbiome is challenging. To investigate this, we developed mucin-immobilized particles by immobilizing porcine gastric mucin (PGM) onto glass beads chemically modified with boronic acid. These PGM-immobilized particles were then anaerobically cultured with human fecal microbiota, and the bacteria adhering to PGM were isolated. Interestingly, the microbiome composition remained largely unchanged irrespective of PGM immobilization. Nonetheless, bacteria isolated from PGM-immobilized glass particles exhibited notably higher N-acetylgalactosaminidase activity compared to the control beads. Furthermore, Bacteroides strains isolated from PGM-immobilized glass particles displayed enhanced adhesive and metabolic properties to PGM. These findings underscore the utility of PGM particles in enriching and isolating specific microbes. Moreover, they highlight substantial differences in microbial properties at the strain level. We anticipate that PGM-immobilized particles will advance culture-based microbiome research, emphasizing the significance of strain-level characterization. IMPORTANCE: Metabolism of mucin glycans by gut bacteria represents a crucial strategy for accessing nutrient reservoirs. The efficacy of mucin glycan utilization among gut bacteria hinges on the metabolic capabilities of individual strains, necessitating meticulous strain-level characterization. In this investigation, we used glass beads chemically immobilized with mucins to selectively enrich bacteria from fecal fermentation cultures, based on their superior adhesion to and metabolism of mucin glycoproteins. These findings lend support to the hypothesis that the physical interactions between bacteria and mucin glycoprotein components directly correlate with their capacity to utilize mucins as nutrient sources. Furthermore, our study implies that physical proximity may significantly influence bacterial nutrient acquisition within the ecosystem, facilitating gut bacteria's access to carbohydrate components.

  7. Modulation of the Toll-like Receptor 3-Mediated Intestinal Immune Response by Water Kefir International-journal International-coauthorship Peer-reviewed

    Stefania Dentice Maidana†, Ramiro Ortiz Moyano†, Mariano Elean, Yoshiya Imamura, Leonardo Albarracín, Fu Namai, Yoshihito Suda, Keita Nishiyama, Julio Villena*, Haruki Kitazawa*, (†: Equal contribution)contribution

    Microbiol. Res. 15 1239-1250 2024/07/20

    Publisher: MDPI

    DOI: 10.3390/microbiolres15030083  

  8. Antagonistic Effects of Corynebacterium pseudodiphtheriticum 090104 on Respiratory Pathogens. International-journal International-coauthorship Peer-reviewed

    Ramiro Ortiz Moyano, Stefania Dentice Maidana, Yoshiya Imamura, Mariano Elean, Fu Namai, Yoshihito Suda, Keita Nishiyama, Vyacheslav Melnikov, Haruki Kitazawa, Julio Villena

    Microorganisms 12:1295 (7) 1-17 2024/06/26

    Publisher:

    DOI: 10.3390/microorganisms12071295  

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    In previous studies, it was demonstrated that Corynebacterium pseudodiphtheriticum 090104, isolated from the human nasopharynx, modulates respiratory immunity, improving protection against infections. Here, the antagonistic effect of the 090104 strain on respiratory pathogens, including Streptococcus pneumoniae, Staphylococcus aureus, Klebsiella pneumoniae, Pseudomonas aeruginosa, and Acinetobacter baumannii, was explored. In a series of in vitro studies, the capacity of C. pseudodiphtheriticum 090104, its bacterium-like particles, and its culture supernatants to coaggregate, inhibit the growth, and change the virulent phenotype of pathogenic bacteria was evaluated. The results showed that the 090104 strain was able to exert a bacteriostatic effect on K. pneumoniae and S. pneumoniae growth. In addition, C. pseudodiphtheriticum 090104 coaggregated, inhibited biofilm formation, and induced phenotypic changes in all the respiratory pathogens evaluated. In conclusion, this work demonstrated that, in addition to its beneficial effects exerted by host-microbe interactions, C. pseudodiphtheriticum 090104 can enhance protection against respiratory pathogens through its microbe-microbe interactions. The mechanisms involved in such interactions should be evaluated in future research.

  9. The Mucus-Binding Factor Mediates Lacticaseibacillus rhamnosus CRL1505 Adhesion but not Immunomodulation in the Respiratory Tract International-journal International-coauthorship

    Binghui Zhou, Mariano Elean, Lorena Arce, Kohtaro Fukuyama, Kae Tomotsune, Stefania Dentice Maidana, Sudeb Saha, Fu Namai, Keita Nishiyama, María Guadalupe Vizoso-Pinto, Julio Villena, Haruki Kitazawa

    Microorganisms 12:1209 (6) 1-12 2024/06/16

    Publisher:

    DOI: 10.3390/microorganisms12061209  

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    Lacticaseibacillus rhamnosus CRL1505 possesses immunomodulatory activities in the gastrointestinal and respiratory tracts when administered orally. Its adhesion to the intestinal mucosa does not condition its beneficial effects. The intranasal administration of L. rhamnosus CRL1505 is more effective than the oral route at modulating immunity in the respiratory tract. Nonetheless, it has not yet been established whether the adherence of the CRL1505 strain to the respiratory mucosa is needed to provide the immune benefits to the host. In this study, we evaluated the role of adhesion to the respiratory mucosa of the mucus-binding factor (mbf) knock-out L. rhamnosus CRL1505 mutant (Δmbf CRL1505) in the context of a Toll-like receptor 3 (TLR3)-triggered innate immunity response. In vitro adhesion studies in porcine bronchial epitheliocytes (PBE cells) indicated that L. rhamnosus Δmbf CRL1505 adhered weakly compared to the wild-type strain. However, in vivo studies in mice demonstrated that the Δmbf CRL1505 also reduced lung damage and modulated cytokine production in the respiratory tract after the activation of TLR3 to a similar extent as the wild-type strain. In addition, the mutant and the wild-type strains modulated the production of cytokines and antiviral factors by alveolar macrophages in the same way. These results suggest that the Mbf protein is partially involved in the ability of L. rhamnosus CRL1505 to adhere to the respiratory epithelium, but the protein is not necessary for the CRL1505 strain to exert its immunomodulatory beneficial effects. These findings are a step forward in the understanding of molecular interactions that mediate the beneficial effects of nasally administered probiotics.

  10. Insights into the Anti-Adipogenic and Anti-Inflammatory Potentialities of Probiotics against Obesity International-journal International-coauthorship Peer-reviewed

    A. K. M. Humayun Kober, Sudeb Saha, Mutamed M Ayyash, Fu Namai, Keita Nishiyama, Kazutoyo Yoda, Julio Villena, Haruki Kitazawa

    Nutrients 16:1373 (9) 1-24 2024/04/30

    Publisher: MDPI

    DOI: 10.3390/nu16091373  

  11. Effect of Lactiplantibacillus plantarum cell-free culture on bacterial pathogens isolated from cystic fibrosis patients: in vitro and in vivo studies. International-journal

    Carla Luciana Abán, Silvia Orosco, Julio Nicolás Argañaraz Aybar, Leonardo Albarracín, Analía Venecia, Liliana Perret, Sonia Ortiz Mayor, Keita Nishiyama, Juan Carlos Valdéz, Haruki Kitazawa, Julio Villena, Nadia Gobbato

    Frontiers in microbiology 15 1440090-1440090 2024

    DOI: 10.3389/fmicb.2024.1440090  

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    This study aimed to investigate the effects of the cell-free supernatant of Lactiplantibacillus plantarum ATCC® 10241TM on the biofilm-forming capacity of Pseudomonas aeruginosa strains isolated from cystic fibrosis (CF) patients. In addition, the study evaluated the in vivo potential of the cell-free supernatant to modulate inflammation and reduce lung damage in mice infected with P. aeruginosa strains or co-challenged with P. aeruginosa and the Streptococcus milleri group (SMG). The results showed that CF-derived P. aeruginosa strains can infect the respiratory tract of adult mice, inducing local inflammation and lung damage. The severity of these infections was exacerbated when P. aeruginosa was co-administered with SMG. Notably, nebulization with the cell-free supernatant of L. plantarum produced beneficial effects, reducing respiratory infection severity and inflammatory responses induced by P. aeruginosa, both alone or in combination with SMG. Reduced bacterial loads and lung damage were observed in supernatant-treated mice compared to controls. Although further mechanistic studies are necessary, the results show that the cell-free supernatant of L. plantarum ATCC® 10241TM is an interesting adjuvant alternative to treat P. aeruginosa respiratory infections and superinfections in CF patients.

  12. Adhesion Inhibition Assay for Helicobacter pylori to Mucin by Lactobacillus. International-journal

    Keita Nishiyama, Takao Mukai

    Methods in molecular biology (Clifton, N.J.) 2763 353-358 2024

    DOI: 10.1007/978-1-0716-3670-1_30  

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    The ability of Lactobacillus to adhere to mucin is a parameter for evaluating the effectiveness of probiotics. In particular, a competitive inhibition assay of pathogenic bacteria using mucin-adherent lactobacilli is useful for identifying Lactobacillus strains capable of preventing mucus from being colonized by pathogens. Here, we describe an adhesion inhibition assay method for Helicobacter pylori to porcine gastric mucin by Limosilactobacillus reuteri.

  13. Development of an intestinal epithelial cell line and organoids derived from the same swine and characterization of their antiviral responses Peer-reviewed

    Kaho MATSUMOTO, Fu NAMAI, Ayako MIYAZAKI, Yoshiya IMAMURA, Kohtaro FUKUYAMA, Wakako IKEDA-OHTSUBO, Keita NISHIYAMA, Julio VILLENA, Kohtaro MIYAZAWA, Haruki KITAZAWA

    Bioscience of Microbiota, Food and Health 43 (4) 342-351 2024

    Publisher: BMFH Press

    DOI: 10.12938/bmfh.2024-0046  

    eISSN: 2186-3342

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    Intestinal homeostasis and integrity are important factors for maintaining host health. This study established intestinal epithelial cell lines and organoids from the same swine jejunal crypts to develop seamless swine intestinal in vitro evaluation systems. The study evaluated the proliferative capacity and tight junction formation of the epithelial cell line and characterized the cell differentiation potential of the intestinal organoids. The evaluation systems were subsequently exposed to the Toll-like receptor 3 (TLR3) agonist poly(I:C) to simulate viral infections and assess the antiviral responses. The results demonstrated no differences in the response to type I interferons. There were, however, significant differences in the expression of interferon-stimulated genes. This study collectively introduced a flexible evaluation system using cell lines and organoids and revealed notable differences in the expression of interferon-stimulated genes, highlighting the complexity of the immune responses in these in vitro systems and the importance of intestinal heterogeneity in assessing viral responses.

  14. In vitro evaluation of the immunomodulatory and wakame assimilation properties of Lactiplantibacillus plantarum strains from swine milk. International-journal Peer-reviewed

    Ryusuke Ohgi, Sudeb Saha, Binghui Zhou, Taiga Sakuma, Mitsuki Sakurai, Yuhka Nakano, Fu Namai, Wakako Ikeda-Ohtsubo, Yoshihito Suda, Keita Nishiyama, Julio Villena, Haruki Kitazawa

    Frontiers in microbiology 15 1324999-1324999 2024

    DOI: 10.3389/fmicb.2024.1324999  

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    The emergence and spread of antibiotic resistance threat forced to explore alternative strategies for improving the resistance to pathogens in livestock production. Probiotic lactic acid bacteria represent an alternative for this objective. In this study, seven Lactiplantibacillus plantarum strains from porcine colostrum and milk were isolated, identified and characterized in terms of their abilities to modulate immunity in porcine intestinal epithelial (PIE) cells. Then, two potential immunoregulatory strains were studied in terms of their ability to utilize and grow in wakame (Undaria pinnafida). Isolates were identified by 16S rRNA gene and evaluated by studying their interaction with PIE cells. The expressions of peptidoglycan recognition proteins (PGRPs), nucleotide-binding oligomerization domain (NODs), host defense peptides (pBD), and type I interferons (IFNs) were evaluated by RT-qPCR. The strain 4M4417 showed a remarkable capacity to differentially regulate the expression of PGRP1, PGRP3, NOD1, NOD2, and pBD1 in PIE cells. On the other hand, the strain 4M4326 was the most efficient to improve the expression of IFN-α and IFN-β in PIE cells challenged with poly (I:C). Both L. plantarum 4M4326 and 4M4417 were characterized in terms of their ability to utilize wakame. Results demonstrated that both strains efficiently grew in wakame-based broth. Our results suggest that L. planatrum 4M4326 and 4M4417 are interesting candidates to develop immunomodulatory feeds based on wakame utilization. These new immunosynbiotic feeds could help to reduce severity of intestinal infections and improve immune health status in pigs.

  15. Immunobiotic Ligilactobacillus salivarius FFIG58 Confers Long-Term Protection against Streptococcus pneumoniae International-journal International-coauthorship Peer-reviewed

    Mariano Elean, Fernanda Raya-Tonetti, Kohtaro Fukuyama, Luciano Arellano-Arriagada, Fu Namai, Yoshihito Suda, Nadia Gobbato, Keita Nishiyama, Julio Villena, Haruki Kitazawa

    International Journal of Molecular Sciences 24(21):15773 (21) 1-16 2023/10/30

    Publisher: MDPI

    DOI: 10.3390/ijms242115773  

  16. D-amino Acids Ameliorate Experimental Colitis and Cholangitis by Inhibiting Growth of Proteobacteria: Potential Therapeutic Role in Inflammatory Bowel Disease. International-journal Peer-reviewed

    Satoko Umeda, Tomohisa Sujino, Kentaro Miyamoto, Yusuke Yoshimatsu, Yosuke Harada, Keita Nishiyama, Yoshimasa Aoto, Keika Adachi, Naoki Hayashi, Kimiko Amafuji, Nobuko Moritoki, Shinsuke Shibata, Nobuo Sasaki, Masashi Mita, Shun Tanemoto, Keiko Ono, Yohei Mikami, Jumpei Sasabe, Kaoru Takabayashi, Naoki Hosoe, Toshihiko Suzuki, Toshiro Sato, Koji Atarashi, Toshiaki Teratani, Haruhiko Ogata, Nobuhiro Nakamoto, Daisuke Shiomi, Hiroshi Ashida, Takanori Kanai

    Cellular and molecular gastroenterology and hepatology 16 (6) 1011-1031 2023/08/09

    DOI: 10.1016/j.jcmgh.2023.08.002  

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    BACKGROUND & AIMS: D-amino acids, the chiral counterparts of protein L-amino acids, were primarily produced and utilized by microbes, including those in the human gut. However, little was known about how orally administered or microbe-derived D-amino acids affected the gut microbial community or gut disease progression. METHODS: The ratio of D- to L-amino acids was analyzed in feces and blood from patients with ulcerative colitis (UC) and healthy controls. Also, composition of microbe was analyzed from patients with UC. Mice were treated with D-amino acid in dextran sulfate sodium colitis model and liver cholangitis model. RESULTS: The ratio of D- to L-amino acids was lower in the feces of patients with UC than that of healthy controls. Supplementation of D-amino acids ameliorated UC-related experimental colitis and liver cholangitis by inhibiting growth of Proteobacteria. Addition of D-alanine, a major building block for bacterial cell wall formation, to culture medium inhibited expression of the ftsZ gene required for cell fission in the Proteobacteria Escherichia coli and Klebsiella pneumoniae, thereby inhibiting growth. Overexpression of ftsZ restored growth of E. coli even when D-alanine was present. We found that D-alanine not only inhibited invasion of pathological K. pneumoniae into the host via pore formation in intestinal epithelial cells but also inhibited growth of E. coli and generation of antibiotic-resistant strains. CONCLUSIONS: D-amino acids might have potential for use in novel therapeutic approaches targeting Proteobacteria-associated dysbiosis and antibiotic-resistant bacterial diseases by means of their effects on the intestinal microbiota community.

  17. Recent Advances in the Use of Probiotics to Improve Meat Quality of Small Ruminants: A Review International-journal

    Sudeb Saha, Kohtaro Fukuyama, Marina Debnath, Fu Namai, Keita Nishiyama, Haruki Kitazawa

    Microorganisms 11 (7) 1652-1652 2023/06/25

    Publisher: MDPI AG

    DOI: 10.3390/microorganisms11071652  

    eISSN: 2076-2607

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    Meat from small ruminants is considered a high quality and delicacy product in many countries. Several benefits have been perceived from probiotics as dietary supplements, such as improved carcass weight, color, tenderness, flavor, muscle fiber structure, water-holding capacity, and healthy fatty acid profile of the meat. Thus, the present review focuses on the effect of probiotics on improving the quality of meat from small ruminants. Though many benefits have been associated with the use of probiotics, the findings of all the considered articles are not always consistent, and the mechanisms behind improving meat quality are not appropriately defined. This variability of findings could be due to the use of different probiotic strains, dosage rates, number of days of experiment, nutrition, breed, age, and health status of the animals. Therefore, future research should emphasize specific strains, optimal dose and days of administration, route, and mechanisms for the specific probiotic strains to host. This review provides a comprehensive overview of the use of probiotics for small ruminants and their impact on meat quality.

  18. Partial Characterization and Immunomodulatory Effects of Exopolysaccharides from Streptococcus thermophilus SBC8781 during Soy Milk and Cow Milk Fermentation. International-journal Peer-reviewed

    Hajime Nakata, Yoshiya Imamura, Sudeb Saha, René Emanuel Lobo, Shugo Kitahara, Shota Araki, Mikado Tomokiyo, Fu Namai, Masanori Hiramitsu, Takashi Inoue, Keita Nishiyama, Julio Villena, Haruki Kitazawa

    Foods (Basel, Switzerland) 12 (12) 2023/06/15

    DOI: 10.3390/foods12122374  

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    The immunomodulatory properties of exopolysaccharides (EPSs) produced by Streptococcus thermophilus have not been explored in depth. In addition, there are no comparative studies of the functional properties of EPSs produced by streptococci in different food matrices. In this work, EPSs from S. thermophilus SBC8781 were isolated after soy milk (EPS-s) or cow milk (EPS-m) fermentation, identified, and characterized in their abilities to modulate immunity in porcine intestinal epithelial cells. Fresh soy milk and cow milk were inoculated with S. thermophilus SBC8781 (7 log CFU/mL) and incubated at 37 °C for 24 h. The extraction of EPSs was performed by the ethanol precipitation method. Analytical techniques, including NMR, UV-vis spectroscopy, and chromatography, identified and characterized both biopolymer samples as polysaccharides with high purity levels and similar Mw. EPS-s and EPS-m had heteropolysaccharide structures formed by galactose, glucose, rhamnose, ribose, and mannose, although with different monomer proportions. On the other hand, EPS-s had higher quantities of acidic polymer than EPS-m. The biopolymer production of the SBC8781 strain from the vegetable culture broth was 200-240 mg/L, which was higher than that produced in milk, which reached concentrations of 50-70 mg/L. For immunomodulatory assays, intestinal epithelial cells were stimulated with 100 µg/mL of EPS-s or EPS-m for 48 h and then stimulated with the Toll-like receptor 3 agonist poly(I:C). EPS-s significantly reduced the expression of IL-6, IFN-β, IL-8, and MCP-1 and increased the negative regulator A20 in intestinal epithelial cells. Similarly, EPS-m induced a significant reduction of IL-6 and IL-8 expressions, but its effect was less remarkable than that caused by EPS-s. Results indicate that the structure and the immunomodulatory activity of EPSs produced by the SBC8781 strain vary according to the fermentation substrate. Soy milk fermented with S. thermophilus SBC8781 could be a new immunomodulatory functional food, which should be further evaluated in preclinical trials.

  19. Oral Administration of Lacticaseibacillus rhamnosus CRL1505 Modulates Lung Innate Immune Response against Klebsiella pneumoniae ST25. International-journal International-coauthorship Peer-reviewed

    Stefania Dentice Maidana, Yoshiya Imamura, Mariano Elean, Leonardo Albarracín, Keita Nishiyama, Yoshihito Suda, Shoichiro Kurata, María Ángela Jure, Haruki Kitazawa, Julio Villena

    Microorganisms 11:1148 (5) 1-13 2023/04/28

    Publisher:

    DOI: 10.3390/microorganisms11051148  

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    Orally administered Lacticaseibacillus rhamnosus CRL1505 enhances respiratory immunity, providing protection against respiratory viruses and Streptococcus pneumoniae. However, the capacity of the CRL1505 strain to improve respiratory immunity against Gram-negative bacterial infections has not been evaluated before. The aim of this work was to evaluate whether the Lcb. rhamnosus CRL1505 was able to beneficially regulate the respiratory innate immune response and enhance the resistance to hypermucoviscous KPC-2-producing Klebsiella pneumoniae of the sequence type 25 (ST25). BALB/c mice were treated with the CRL1505 strain via the oral route and then nasally challenged with K. pneumoniae ST25 strains LABACER 01 or LABACER 27. Bacterial cell counts, lung injuries and the respiratory and systemic innate immune responses were evaluated after the bacterial infection. The results showed that K. pneumoniae ST25 strains increased the levels of TNF-α, IL-1β, IL-6, IFN-γ, IL-17, KC and MPC-1 in the respiratory tract and blood, as well as the numbers of BAL neutrophils and macrophages. Mice treated with Lcb. rhamnosus CRL1505 had significantly lower K. pneumoniae counts in their lungs, as well as reduced levels of inflammatory cells, cytokines and chemokines in the respiratory tract and blood when compared to infected controls. Furthermore, higher levels of the regulatory cytokines IL-10 and IL-27 were found in the respiratory tract and blood of CRL1505-treated mice than controls. These results suggest that the ability of Lcb. rhamnosus CRL1505 to help with the control of detrimental inflammation in lungs during K. pneumoniae infection would be a key feature to improve the resistance to this pathogen. Although further mechanistic studies are necessary, Lcb. rhamnosus CRL1505 can be proposed as a candidate to improve patients' protection against hypermucoviscous KPC-2-producing strains belonging to the ST25, which is endemic in the hospitals of our region.

  20. A bacterial sulfoglycosidase highlights mucin O-glycan breakdown in the gut ecosystem. International-journal Peer-reviewed

    Toshihiko Katoh, Chihaya Yamada, Michael D Wallace, Ayako Yoshida, Aina Gotoh, Moe Arai, Takako Maeshibu, Toma Kashima, Arno Hagenbeek, Miriam N Ojima, Hiromi Takada, Mikiyasu Sakanaka, Hidenori Shimizu, Keita Nishiyama, Hisashi Ashida, Junko Hirose, Maria Suarez-Diez, Makoto Nishiyama, Ikuo Kimura, Keith A Stubbs, Shinya Fushinobu, Takane Katayama

    Nature chemical biology 19 (6) 778-789 2023/03/02

    DOI: 10.1038/s41589-023-01272-y  

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    Mucinolytic bacteria modulate host-microbiota symbiosis and dysbiosis through their ability to degrade mucin O-glycans. However, how and to what extent bacterial enzymes are involved in the breakdown process remains poorly understood. Here we focus on a glycoside hydrolase family 20 sulfoglycosidase (BbhII) from Bifidobacterium bifidum, which releases N-acetylglucosamine-6-sulfate from sulfated mucins. Glycomic analysis showed that, in addition to sulfatases, sulfoglycosidases are involved in mucin O-glycan breakdown in vivo and that the released N-acetylglucosamine-6-sulfate potentially affects gut microbial metabolism, both of which were also supported by a metagenomic data mining analysis. Enzymatic and structural analysis of BbhII reveals the architecture underlying its specificity and the presence of a GlcNAc-6S-specific carbohydrate-binding module (CBM) 32 with a distinct sugar recognition mode that B. bifidum takes advantage of to degrade mucin O-glycans. Comparative analysis of the genomes of prominent mucinolytic bacteria also highlights a CBM-dependent O-glycan breakdown strategy used by B. bifidum.

  21. Sharing of Moonlighting Proteins Mediates the Symbiotic Relationship among Intestinal Commensals. International-journal Peer-reviewed

    Keita Nishiyama, Cheng-Chung Yong, Nobuko Moritoki, Haruki Kitazawa, Toshitaka Odamaki, Jin-Zhong Xiao, Takao Mukai

    Applied and environmental microbiology 89 (3) e0219022 2023/02/27

    DOI: 10.1128/aem.02190-22  

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    The human gastrointestinal tract is inhabited by trillions of symbiotic bacteria that form a complex ecological community and influence human physiology. Symbiotic nutrient sharing and nutrient competition are the most studied relationships in gut commensals, whereas the interactions underlying homeostasis and community maintenance are not fully understood. Here, we provide insights into a new symbiotic relationship wherein the sharing of secreted cytoplasmic proteins, called "moonlighting proteins," between two heterologous bacterial strains (Bifidobacterium longum and Bacteroides thetaiotaomicron) was observed to affect the adhesion of bacteria to mucins. B. longum and B. thetaiotaomicron were cocultured using a membrane-filter system, and in this system the cocultured B. thetaiotaomicron cells showed greater adhesion to mucins compared to that shown by monoculture cells. Proteomic analysis showed the presence of 13 B. longum-derived cytoplasmic proteins on the surface of B. thetaiotaomicron. Moreover, incubation of B. thetaiotaomicron with the recombinant proteins GroEL and elongation factor Tu (EF-Tu)-two well-known mucin-adhesive moonlighting proteins of B. longum-led to an increase in the adhesion of B. thetaiotaomicron to mucins, a result attributed to the localization of these proteins on the B. thetaiotaomicron cell surface. Furthermore, the recombinant EF-Tu and GroEL proteins were observed to bind to the cell surface of several other bacterial species; however, the binding was species dependent. The present findings indicate a symbiotic relationship mediated by the sharing of moonlighting proteins among specific strains of B. longum and B. thetaiotaomicron. IMPORTANCE The adhesion of intestinal bacteria to the mucus layer is an important colonization strategy in the gut environment. Generally, the bacterial adhesion process is a characteristic feature of the individual cell surface-associated adhesion factors secreted by a particular bacterium. In this study, coculture experiments between Bifidobacterium and Bacteroides show that the secreted moonlighting proteins adhere to the cell surface of coexisting bacteria and alter the adhesiveness of the bacteria to mucins. This finding indicates that the moonlighting proteins act as adhesion factors for not only homologous strains but also for coexisting heterologous strains. The presence of a coexisting bacterium in the environment can significantly alter the mucin-adhesive properties of another bacterium. The findings from this study contribute to a better understanding of the colonization properties of gut bacteria through the discovery of a new symbiotic relationship between them.

  22. Establishment of porcine fecal-derived ex vivo microbial communities to evaluate the impact of livestock feed on gut microbiome Peer-reviewed

    Yuji TSUJIKAWA, Keita NISHIYAMA, Fu NAMAI, Yoshiya IMAMURA, Taiga SAKUMA, Sudeb SAHA, Masahiko SUZUKI, Mitsuki SAKURAI, Ryo IWATA, Kengo MATSUO, Hironori TAKAMORI, Yoshihito SUDA, Binghui ZHOU, Itsuko FUKUDA, Julio VILLENA, Iwao SAKANE, Ro OSAWA, Haruki KITAZAWA

    Bioscience of Microbiota, Food and Health 43 (2) 100-109 2023

    Publisher: BMFH Press

    DOI: 10.12938/bmfh.2023-085  

    eISSN: 2186-3342

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    Sustainable livestock production requires reducing competition for food and feed resources and increasing the utilization of food by-products in livestock feed. This study describes the establishment of an anaerobic batch culture model to simulate pig microbiota and evaluate the effects of a food by-product, wakame seaweed stalks, on ex vivo microbial communities. We selected one of the nine media to support the growth of a bacterial community most similar in composition and diversity to that observed in pig donor feces. Supplementation with wakame altered the microbial profile and short-chain fatty acid composition in the ex vivo model, and a similar trajectory was observed in the in vivo pig experimental validation. Notably, the presence of wakame increased the abundance of Lactobacillus species, which may have been due to cross-feeding with Bacteroides. These results suggest the potential of wakame as a livestock feed capable of modulating the pig microbiome. Collectively, this study highlights the ability to estimate the microbiome changes that occur when pigs are fed a specific feed using an ex vivo culture model.

  23. Establishment of a porcine bronchial epithelial cell line and its application to study innate immunity in the respiratory epithelium. International-journal Peer-reviewed

    Kohtaro Fukuyama, Tao Zhuang, Eita Toyoshi, Fernanda Raya Tonetti, Sudeb Saha, Binghui Zhou, Wakako Ikeda-Ohtsubo, Keita Nishiyama, Hisashi Aso, Julio Villena, Haruki Kitazawa

    Frontiers in immunology 14 1117102-1117102 2023

    DOI: 10.3389/fimmu.2023.1117102  

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    In vitro culture models that precisely mirror the porcine respiratory epithelium are needed to gain insight into how pathogens and host interact. In this study, a new porcine bronchial epithelial cell line, designated as PBE cells, was established from the respiratory tract of a neonatal pig. PBE cells assumed a cobblestone-epithelial like morphology with close contacts between the cells when they reached confluence. The PBE cell line was characterized in terms of its expression of pattern recognition receptors (PRRs) and its ability to respond to the activation of the Toll-like receptor 3 (TLR3) and TLR4 signaling pathways, which are key PRRs involved in the defense of the respiratory epithelium against pathogens. PBE cells stimulated with poly(I:C) were able to up-regulate the expression of IFN-β, IFN-λ1 (IL-29), IFN-λ3 (IL-28B), the antiviral factors Mx1, OAS1, and PKR, as well as the viral PRRs RIG-1 and MDA5. The expression kinetics studies of immune factors in PBE cells allow us to speculate that this cell line can be a useful in vitro tool to investigate treatments that help to potentiate antiviral immunity in the respiratory epithelium of the porcine host. In addition, poly(I:C) and LPS treatments increased the expression of the inflammatory cytokines TNF-α, IL-6, IL-8, and MCP-1/CCL2 and differentially modulated the expression of negative regulators of the TLR signaling pathways. Then, PBE cells may also allow the evaluation of treatments that can regulate TLR3- and TLR4-mediated inflammatory injury in the porcine airway, thereby protecting the host against harmful overresponses.

  24. The Mucus Binding Factor Is Not Necessary for Lacticaseibacillus rhamnosus CRL1505 to Exert Its Immunomodulatory Activities in Local and Distal Mucosal Sites. International-journal Peer-reviewed

    Kae Tomotsune, Fernanda Raya Tonetti, Hiroya Mizuno, Mariano Elean, Kohtaro Fukuyama, Binghui Zhou, Wakako Ikeda-Ohtsubo, Keita Nishiyama, Akihiro Yamamura, Hideaki Karasawa, Shinobu Ohnuma, Akira Horii, Tadao Saito, Haruki Kitazawa, Julio Villena

    International journal of molecular sciences 23 (22) 2022/11/18

    DOI: 10.3390/ijms232214357  

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    Both viable and non-viable orally administered Lacticaseibacillus rhamnosus CRL1505 modulate immunity in local (intestine) and distal (respiratory) mucosal sites. So, intestinal adhesion and colonization are not necessary for this probiotic strain to exert its immunomodulatory effects. In this work, a mucus-binding factor knockout CRL1505 strain (ΔmbfCRL1505) was obtained and the lack of binding ability to both intestinal epithelial cells and mucin was demonstrated in vitro. In addition, two sets of in vivo experiments in 6-week-old Balb/c mice were performed to evaluate ΔmbfCRL1505 immunomodulatory activities. (A) Orally administered ΔmbfCRL1505 prior to intraperitoneal injection of the Toll-like receptor 3 (TLR3) agonist poly(I:C) significantly reduced intraepithelial lymphocytes (CD3+NK1.1+CD8αα+) and pro-inflammatory mediators (TNF-α, IL-6 and IL-15) in the intestinal mucosa. (B) Orally administered ΔmbfCRL1505 prior to nasal stimulation with poly(I:C) significantly decreased the levels of the biochemical markers of lung tissue damage. In addition, reduced recruitment of neutrophils and levels of pro-inflammatory mediators (TNF-α, IL-6 and IL-8) as well as increased IFN-β and IFN-γ in the respiratory mucosa were observed in ΔmbfCRL1505-treated mice when compared to untreated control mice. The immunological changes induced by the ΔmbfCRL1505 strain were not different from those observed for the wild-type CRL1505 strain. Although it is generally accepted that the expression of adhesion factors is necessary for immunobiotics to induce their beneficial effects, it was demonstrated here that the mbf protein is not required for L. rhamnosus CRL1505 to exert its immunomodulatory activities in local and distal mucosal sites. These results are a step forward towards understanding the mechanisms involved in the immunomodulatory capabilities of L. rhamnosus CRL1505.

  25. Identification of trypsin-degrading commensals in the large intestine. International-journal Peer-reviewed

    Youxian Li, Eiichiro Watanabe, Yusuke Kawashima, Damian R Plichta, Zhujun Wang, Makoto Ujike, Qi Yan Ang, Runrun Wu, Munehiro Furuichi, Kozue Takeshita, Koji Yoshida, Keita Nishiyama, Sean M Kearney, Wataru Suda, Masahira Hattori, Satoshi Sasajima, Takahiro Matsunaga, Xiaoxi Zhang, Kazuto Watanabe, Jun Fujishiro, Jason M Norman, Bernat Olle, Shutoku Matsuyama, Ho Namkoong, Yoshifumi Uwamino, Makoto Ishii, Koichi Fukunaga, Naoki Hasegawa, Osamu Ohara, Ramnik J Xavier, Koji Atarashi, Kenya Honda

    Nature 609 (7927) 582-589 2022/09

    DOI: 10.1038/s41586-022-05181-3  

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    Increased levels of proteases, such as trypsin, in the distal intestine have been implicated in intestinal pathological conditions1-3. However, the players and mechanisms that underlie protease regulation in the intestinal lumen have remained unclear. Here we show that Paraprevotella strains isolated from the faecal microbiome of healthy human donors are potent trypsin-degrading commensals. Mechanistically, Paraprevotella recruit trypsin to the bacterial surface through type IX secretion system-dependent polysaccharide-anchoring proteins to promote trypsin autolysis. Paraprevotella colonization protects IgA from trypsin degradation and enhances the effectiveness of oral vaccines against Citrobacter rodentium. Moreover, Paraprevotella colonization inhibits lethal infection with murine hepatitis virus-2, a mouse coronavirus that is dependent on trypsin and trypsin-like proteases for entry into host cells4,5. Consistently, carriage of putative genes involved in trypsin degradation in the gut microbiome was associated with reduced severity of diarrhoea in patients with SARS-CoV-2 infection. Thus, trypsin-degrading commensal colonization may contribute to the maintenance of intestinal homeostasis and protection from pathogen infection.

  26. O-acetylesterase activity of Bifidobacterium bifidum sialidase facilities the liberation of sialic acid and encourages the proliferation of sialic acid scavenging Bifidobacterium breve. International-journal Peer-reviewed

    Tatsunari Yokoi, Keita Nishiyama, Yuka Kushida, Kazuya Uribayashi, Takahiro Kunihara, Rika Fujimoto, Yuji Yamamoto, Masahiro Ito, Tsuyoshi Miki, Takeshi Haneda, Takao Mukai, Nobuhiko Okada

    Environmental microbiology reports 14 (4) 637-645 2022/08

    DOI: 10.1111/1758-2229.13083  

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    Bifidobacterium bifidum possesses two extracellular sialidases (SiaBb1 and SiaBb2) that release free sialic acid from mucin sialoglycans, which can be utilized via cross-feeding by Bifidobacterium breve that, otherwise, is prevented from utilizing this nutrient source. Modification of sialic acids with O-acetyl esters is known to protect mucin glycans from degradation by bacterial sialidases. Compared to SiaBb2, SiaBb1 has an additional O-acetylesterase (Est) domain. We aimed to elucidate the role of the SiaBb1 Est domain from B. bifidum in sialic acid cross-feeding within Bifidobacterium. Pre-treatment of mucin secreted from bovine submaxillary glands (BSM) using His6 -tagged-Est and -SiaBb2 released a higher amount of sialic acid compared to the pre-treatment by His6 -SiaBb2. Growth of B. breve increased with an increase in nanE expression when supplemented with both His6 -Est- and His6 -SiaBb2-treated BSM. These results indicate that the esterase activity of the SiaBb1 Est domain enhances the efficiency of SiaBb2 to cleave sialic acid from mucin. This free sialic acid can be utilized by coexisting sialic acid scavenging B. breve via cross-feeding. Here, we provide the molecular mechanism underlying the unique sialoglycan degradation property of B. bifidum which is mediated by the complementary activities of SiaBb1 and SiaBb2 in the context of sialic acid cross-feeding.

  27. A Bio-synthetic Hybrid Hydrogel Formed under Physiological Conditions Consisting of Mucin and a Synthetic Polymer Carrying Boronic Acid. International-journal Peer-reviewed

    Masaki Nakahata, Naoki Tominaga, Keishi Saito, Keita Nishiyama, Yuya Tanino, Kiyoshiro Saiki, Masaru Kojima, Shinji Sakai

    Macromolecular bioscience 22 (6) e2200055 2022/06

    DOI: 10.1002/mabi.202200055  

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    Mucin-containing bio-synthetic hybrid hydrogel is successfully formed under physiological conditions upon mixing aqueous solutions of native mucin and synthetic polymers carrying boronic acids. The mechanical properties and stability of the hydrogel in physiological solutions, e.g., cell culture media, are tunable depending on the boronic acid content of polymers. The hydrogel dissolved in the physiological solutions releases native mucin and boronic acid-containing polymer, which can control the adhesion of mammalian cells to the surface.

  28. Vaginal mucus in mice: Developmental and gene expression features of epithelial mucous cells during pregnancy. International-journal Peer-reviewed

    Makoto Sugiyama, Nao Machida, Arata Yasunaga, Nanako Terai, Hanae Fukasawa, Hisaya K Ono, Ryosuke Kobayashi, Keita Nishiyama, Osamu Hashimoto, Shiro Kurusu, Kazuki Yoshioka

    Biology of reproduction 105 (5) 1272-1282 2021/08/20

    DOI: 10.1093/biolre/ioab157  

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    The vagina is the site of copulation and serves as the birth canal. It also provides protection against external pathogens. In mice, due to the absence of cervical glands, the vaginal epithelium is the main producer of vaginal mucus. The development and differentiation of vaginal epithelium-constituting cells and the molecular characteristics of vaginal mucus have not been thoroughly examined. Here, we characterized vaginal mucous cell development and the expression of mucus-related factors in pregnant mice. The vaginal mucous epithelium layer thickened and became multilayered after day 12 of pregnancy and secreted increasing amounts of mucus until early postpartum. Using histochemistry and transmission electron microscopy, we found supra-basal mucous cells as probable candidates for precursor cells. In vaginal mucous cells, the expression of TFF1, a stabilizer of mucus, was high, and some members of mucins and antimicrobial peptides (MUC5B and DEFB1) were expressed in a stage-dependent manner. In summary, this study presents the partial characterization of vaginal epithelial mucous cell lineage and expression of genes encoding several peptide substances that may affect vaginal tissue homeostasis and mucosal immunity during pregnancy and parturition.

  29. Roles of the Cell Surface Architecture of Bacteroides and Bifidobacterium in the Gut Colonization. International-journal Peer-reviewed

    Keita Nishiyama, Tatsunari Yokoi, Makoto Sugiyama, Ro Osawa, Takao Mukai, Nobuhiko Okada

    Frontiers in microbiology 12 754819-754819 2021

    DOI: 10.3389/fmicb.2021.754819  

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    There are numerous bacteria reside within the mammalian gastrointestinal tract. Among the intestinal bacteria, Akkermansia, Bacteroides, Bifidobacterium, and Ruminococcus closely interact with the intestinal mucus layer and are, therefore, known as mucosal bacteria. Mucosal bacteria use host or dietary glycans for colonization via adhesion, allowing access to the carbon source that the host's nutrients provide. Cell wall or membrane proteins, polysaccharides, and extracellular vesicles facilitate these mucosal bacteria-host interactions. Recent studies revealed that the physiological properties of Bacteroides and Bifidobacterium significantly change in the presence of co-existing symbiotic bacteria or markedly differ with the spatial distribution in the mucosal niche. These recently discovered strategic colonization processes are important for understanding the survival of bacteria in the gut. In this review, first, we introduce the experimental models used to study host-bacteria interactions, and then, we highlight the latest discoveries on the colonization properties of mucosal bacteria, focusing on the roles of the cell surface architecture regarding Bacteroides and Bifidobacterium.

  30. Extracellular vesicles produced by Bifidobacterium longum export mucin-binding proteins. International-journal Peer-reviewed

    Keita Nishiyama, Takashi Takaki, Makoto Sugiyama, Itsuko Fukuda, Maho Aiso, Takao Mukai, Toshitaka Odamaki, Jin-Zhong Xiao, Ro Osawa, Nobuhiko Okada

    Applied and environmental microbiology 86 (19) 2020/07/31

    DOI: 10.1128/AEM.01464-20  

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    Extracellular proteins are important factors in host-microbe interactions; however, the specific factors that enable bifidobacterial adhesion and survival in the gastrointestinal (GI) tract are not fully characterized. Here, we discovered that Bifidobacterium longum NCC2705 cultured in bacteria-free supernatants of human fecal fermentation broth released a myriad of particles into the extracellular environment. The aim of this study was to characterize the physiological properties of these extracellular particles. The particles were approximately 50-80 nm in diameter with high protein and dsDNA content, suggesting that they were extracellular vesicles (EVs). A proteomics analysis showed that the EVs primarily consisted of cytoplasmic proteins with crucial functions in essential cellular processes. We identified several mucin-binding proteins using biomolecular interaction analysis, including phosphoketolase, GroEL, EF-Tu, phosphoglycerate kinase, transaldolase (Tal), and Hsp20. The recombinant GroEL and Tal proteins showed high binding affinities to mucin. Further, the immobilization of these proteins on microbeads affected the permanence of microbeads in the murine GI tract. These results suggest that bifidobacterial exposure conditions that mimic the intestine stimulate B. longum EV production. The resulting EVs exported several cytoplasmic proteins that may have promoted B. longum adhesion. This study improved our understanding of the Bifidobacterium colonization strategy in the intestinal microbiome.ImportanceBifidobacterium is a natural inhabitant of the human gastrointestinal (GI) tract. Morphological observations revealed that extracellular appendages of bifidobacteria in complex microbial communities are important for understanding its adaptations to the GI tract environment. We identified dynamic extracellular vesicle (EV) production by Bifidobacterium longum in bacteria-free fecal fermentation broth that was strongly suggestive of differing bifidobacterial extracellular appendages in the GI tract. In addition, export of the adhesive moonlighting proteins mediated by EVs may promote bifidobacterial colonization. This study provides new insight into the roles of EVs on bifidobacterial colonization processes as they adapt to the GI environment.

  31. Crystal Structure of Cell Surface Glyceraldehyde-3-Phosphate Dehydrogenase from Lactobacillus plantarum: Insight into the Mercury Binding Mechanism Peer-reviewed

    米田一成, 緒方美月, 西山啓太, 福田健二, 安田伸, 井越敬司, 木下英樹

    ミルクサイエンス(Web) 68 (1) 3‐11(J‐STAGE)-11 2019/04

    Publisher: 日本酪農科学会

    ISSN: 2188-0700

  32. A new approach for analyzing an adhesive bacterial protein in the mouse gastrointestinal tract using optical tissue clearing. International-journal Peer-reviewed

    Keita Nishiyama, Makoto Sugiyama, Hiroki Yamada, Kyoko Makino, Sayaka Ishihara, Takashi Takaki, Takao Mukai, Nobuhiko Okada

    Scientific reports 9 (1) 4731-4731 2019/03/18

    DOI: 10.1038/s41598-019-41151-y  

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    Several bacterial moonlighting proteins act as adhesion factors, which are important for bacterial colonization of the gastrointestinal (GI) tract. However, little is known about the adherence properties of moonlighting proteins in the GI tract. Here, we describe a new approach for visualizing the localization of moonlighting protein-coated fluorescent microbeads in the whole GI tract by using a tissue optical clearing method, using elongation factor Tu (EF-Tu) as an example. As a bacterial cell surface-localized protein mimic, recombinant EF-Tu from Lactobacillus reuteri was immobilized on microbeads. EF-Tu-coating promoted the interaction of the microbeads with a Caco-2 cell monolayer. Next, the microbeads were orally administered to mice. GI whole tissues were cleared in aqueous fructose solutions of increasing concentrations. At 1 h after administration, the microbeads were diffused from the stomach up to the cecum, and after 3 h, they were diffused throughout the intestinal tract. In the lower digestive tract, EF-Tu-beads were significantly more abundant than non-coated control beads, suggesting that EF-Tu plays an important role in the persistence of the microbeads in the GI tract. The new approach will help in evaluating how moonlighting proteins mediate bacterial colonization.

  33. Adhesion of Lactobacillus to Intestinal Mucin. International-journal

    Keita Nishiyama, Takao Mukai

    Methods in molecular biology (Clifton, N.J.) 1887 159-166 2019

    DOI: 10.1007/978-1-4939-8907-2_14  

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    Adhesion to intestinal mucin is one of the main in vitro tests for the study of probiotic strains. Mucins immobilized on microtiter plates and glass slides are easy and excellent methods used for the quantitative analysis of Lactobacillus adhesion. However, to maintain the performance of the quantitative analysis, these methods must be chosen appropriately according to the nature and characteristics of the strain, such as tolerance to surfactant and the ability to self-aggregate. Here we describe two methodologies used to evaluate adhesion of Lactobacillus to mucin, in addition to the isolation and purification of mucins from porcine colonic tissues.

  34. Adhesion of Lactobacillus to Intestinal Mucin. International-journal Peer-reviewed

    Nishiyama K, Mukai T

    Methods in molecular biology (Clifton, N.J.) 1887 159-166 2019

    DOI: 10.1007/978-1-4939-8907-2_14  

    ISSN: 1064-3745

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    Adhesion to intestinal mucin is one of the main in vitro tests for the study of probiotic strains. Mucins immobilized on microtiter plates and glass slides are easy and excellent methods used for the quantitative analysis of Lactobacillus adhesion. However, to maintain the performance of the quantitative analysis, these methods must be chosen appropriately according to the nature and characteristics of the strain, such as tolerance to surfactant and the ability to self-aggregate. Here we describe two methodologies used to evaluate adhesion of Lactobacillus to mucin, in addition to the isolation and purification of mucins from porcine colonic tissues.

  35. Two extracellular sialidases from Bifidobacterium bifidum promote the degradation of sialyl-oligosaccharides and support the growth of Bifidobacterium breve. International-journal Peer-reviewed

    Nishiyama K, Nagai A, Uribayashi K, Yamamoto Y, Mukai T, Okada N

    Anaerobe 52 22-28 2018/08

    DOI: 10.1016/j.anaerobe.2018.05.007  

    ISSN: 1075-9964

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    We investigated the roles of extracellular sialidases (SiaBb1 and SiaBb2) in cross-feeding between sialidase-carrying Bifidobacterium bifidum and sialic acid-utilizing Bifidobacterium breve. Using 6' sialyllactose (6'SL) as a carbon source, the number of wild-type B. bifidum cells increased while that of a siabb2-inactivated strain (Δsiabb2) did not. Coculture of these two strains in the presence of 6'SL resulted in similar increase in cell numbers. Coculture of wild-type B. bifidum, but not the Δsiabb2 strain, with sialic acid-utilizing Bifidobacterium breve, which cannot release sialic acids from carbohydrates, in the presence of 6'SL increased the number of B. breve cells. Moreover, when mucin was used as a carbon source, B. breve growth was increased in cocultures with B. bifidum wild-type and Δsiabb2 strains, suggesting that SiaBb1 may be involved. Additionally, B. breve cell numbers increased during cultivation with recombinant SiaBb1-and SiaBb2-treated mucin as the sole carbon source. These results indicated that B. bifidum SiaBb2 liberated sialic acid from sialyl-human milk oligosaccharides and -mucin glycans, supporting the growth of B. breve through sialic acid cross-feeding. SiaBb1 may assist in the degradation of mucin glycan. Collectively, our results revealed that both the B. bifidum extracellular sialidases promote the utilization of sialylated carbohydrates and supply free sialic acid to other Bifidobacterium strains.

  36. Bifidobacterium bifidum Extracellular Sialidase Enhances Adhesion to the Mucosal Surface and Supports Carbohydrate Assimilation International-journal Peer-reviewed

    Keita Nishiyama, Yuji Yamamoto, Makoto Sugiyama, Takashi Takaki, Tadasu Urashima, Satoru Fukiya, Atsushi Yokota, Nobuhiko Okada, Takao Mukai

    MBIO 8 (5) 2017/09

    DOI: 10.1128/mBio.00928-17  

    ISSN: 2150-7511

  37. Anchorless cell surface proteins function as laminin-binding adhesins in Lactobacillus rhamnosus FSMM22 International-journal Peer-reviewed

    Ni Putu Desy Aryantini, Daisuke Kondoh, Keita Nishiyama, Yuji Yamamoto, Takao Mukai, I. Nengah Sujaya, Tadasu Urashima, Kenji Fukuda

    FEMS MICROBIOLOGY LETTERS 364 (6) 2017/03

    DOI: 10.1093/femsle/fnx056  

    ISSN: 0378-1097

    eISSN: 1574-6968

  38. Adhesion Properties of Lactic Acid Bacteria on Intestinal Mucin. International-journal Peer-reviewed

    Nishiyama K, Sugiyama M, Mukai T

    Microorganisms 4 (3) 2016/09

    DOI: 10.3390/microorganisms4030034  

    More details Close

    Lactic acid bacteria (LAB) are Gram-positive bacteria that are natural inhabitants of the gastrointestinal (GI) tracts of mammals, including humans. Since Mechnikov first proposed that yogurt could prevent intestinal putrefaction and aging, the beneficial effects of LAB have been widely demonstrated. The region between the duodenum and the terminal of the ileum is the primary region colonized by LAB, particularly the Lactobacillus species, and this region is covered by a mucus layer composed mainly of mucin-type glycoproteins. The mucus layer plays a role in protecting the intestinal epithelial cells against damage, but is also considered to be critical for the adhesion of Lactobacillus in the GI tract. Consequently, the adhesion exhibited by lactobacilli on mucin has attracted attention as one of the critical factors contributing to the persistent beneficial effects of Lactobacillus in a constantly changing intestinal environment. Thus, understanding the interactions between Lactobacillus and mucin is crucial for elucidating the survival strategies of LAB in the GI tract. This review highlights the properties of the interactions between Lactobacillus and mucin, while concomitantly considering the structure of the GI tract from a histochemical perspective.

  39. Lactobacillus rhamnosus GG SpaC pilin subunit binds to the carbohydrate moieties of intestinal glycoconjugates International-journal Peer-reviewed

    Keita Nishiyama, Shintaro Ueno, Makoto Sugiyama, Yuji Yamamoto, Takao Mukai

    ANIMAL SCIENCE JOURNAL 87 (6) 809-815 2016/06

    DOI: 10.1111/asj.12491  

    ISSN: 1344-3941

    eISSN: 1740-0929

  40. Adhesion properties of a putative polymorphic fimbrial subunit protein from Bifidobacterium longum subsp. longum. Peer-reviewed

    Suzuki K, Nishiyama K, Miyajima H, Osawa R, Yamamoto Y, Mukai T

    Bioscience of microbiota, food and health 35 (1) 19-27 2016

    DOI: 10.12938/bmfh.2015-015  

    ISSN: 2186-6953

    More details Close

    In our previous study, we found that the open reading frame bl0675 in the genome of Bifidobacterium longum subsp. longum isolated from human feces encoded a novel putative fimbrial protein, was highly polymorphic, and had five variants (A, B, C, D, and E types). The aim of this study was to evaluate the affinity of these variants to porcine colonic mucins (PCMs). Protein-binding properties were examined using the recombinant BL0675 protein containing a C-terminal 6 × His tag (His-BL0675). Surface plasmon resonance analysis demonstrated that the His-BL0675 A type had strong affinity to PCMs (KD = 9.82 × 10(-8) M), whereas the B, C, D, and E types exhibited little or no binding. In a competitive enzyme-linked immunosorbent assay, His-BL0675 A type binding was reduced by addition of mucin oligosaccharides, suggesting that the binding occurs via carbohydrate chains of PCMs. The localization of BL0675 to the B. longum subsp. longum cell surface was confirmed by western blot analysis using A type polyclonal antibodies. Bacterial adhesion of B. longum subsp. longum to PCMs was also blocked by A type-specific antibodies; however, its adhesion properties were strain specific. Our results suggest that the BL0675 variants significantly contribute to the adhesion of B. longum subsp. longum strains. The expression and the adhesive properties of this protein are affected by genetic polymorphisms and are specific for B. longum subsp. longum strains. However, further studies are required on the properties of binding of these putative fimbrial proteins to the human gastrointestinal tract.

  41. Cell surface-associated aggregation-promoting factor from Lactobacillus gasseriSBT2055 facilitates host colonization and competitive exclusion of Campylobacter jejuni International-journal Peer-reviewed

    Keita Nishiyama, Akiko Nakazato, Shintaro Ueno, Yasuyuki Seto, Tsutomu Kakuda, Shinji Takai, Yuji Yamamoto, Takao Mukai

    MOLECULAR MICROBIOLOGY 98 (4) 712-726 2015/11

    DOI: 10.1111/mmi.13153  

    ISSN: 0950-382X

    eISSN: 1365-2958

  42. Mouse Models for Assessing the Protective Efficacy of Lactobacillus gasseri SBT2055 against Helicobacter suis Infection Associated with the Development of Gastric Mucosa-Associated Lymphoid Tissue Lymphoma International-journal Peer-reviewed

    Hidenori Matsui, Tetsufumi Takahashi, Anders Overby, Somay Yamagata Murayama, Haruno Yoshida, Yuji Yamamoto, Keita Nishiyama, Yasuyuki Seto, Takashi Takahashi, Takao Mukai, Masahiko Nakamura

    HELICOBACTER 20 (4) 291-298 2015/08

    DOI: 10.1111/hel.12203  

    ISSN: 1083-4389

    eISSN: 1523-5378

  43. Adhesion properties of Lactobacillus rhamnosus mucus-binding factor to mucin and extracellular matrix proteins. International-journal Peer-reviewed

    Keita Nishiyama, Koichi Nakamata, Shintaro Ueno, Akari Terao, Ni Putu Desy Aryantini, I Nengah Sujaya, Kenji Fukuda, Tadasu Urashima, Yuji Yamamoto, Takao Mukai

    Bioscience, biotechnology, and biochemistry 79 (2) 271-9 2015

    DOI: 10.1080/09168451.2014.972325  

    ISSN: 0916-8451

    More details Close

    We previously described potential probiotic Lactobacillus rhamnosus strains, isolated from fermented mare milk produced in Sumbawa Island, Indonesia, which showed high adhesion to porcine colonic mucin (PCM) and extracellular matrix (ECM) proteins. Recently, mucus-binding factor (MBF) was found in the GG strain of L. rhamnosus as a mucin-binding protein. In this study, we assessed the ability of recombinant MBF protein from the FSMM22 strain, one of the isolates of L. rhamnosus from fermented Sumbawa mare milk, to adhere to PCM and ECM proteins by overlay dot blot and Biacore assays. MBF bound to PCM, laminin, collagen IV, and fibronectin with submicromolar dissociation constants. Adhesion of the FSMM22 mbf mutant strain to PCM and ECM proteins was significantly less than that of the wild-type strain. Collectively, these results suggested that MBF contribute to L. rhamnosus host colonization via mucin and ECM protein binding.

  44. Lactobacillus gasseri SBT2055 Reduces Infection by and Colonization of Campylobacter jejuni International-journal Peer-reviewed

    Keita Nishiyama, Yasuyuki Seto, Kazuki Yoshioka, Tsutomu Kakuda, Shinji Takai, Yuji Yamamoto, Takao Mukai

    PLOS ONE 9 (9) e108827 2014/09

    DOI: 10.1371/journal.pone.0108827  

    ISSN: 1932-6203

  45. Evaluation of bifidobacterial adhesion to acidic sugar chains of porcine colonic mucins International-journal Peer-reviewed

    Keita Nishiyama, Akira Kawanabe, Hirofumi Miyauchi, Fumiaki Abe, Daigo Tsubokawa, Kazuhiko Ishihara, Yuji Yamamoto, Takao Mukai

    BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY 78 (8) 1444-1451 2014/08

    DOI: 10.1080/09168451.2014.918491  

    ISSN: 0916-8451

    eISSN: 1347-6947

  46. Identification and Characterization of Sulfated Carbohydrate-Binding Protein from Lactobacillus reuteri Peer-reviewed

    Keita Nishiyama, Ayaka Ochiai, Daigo Tsubokawa, Kazuhiko Ishihara, Yuji Yamamoto, Takao Mukai

    PLOS ONE 12 (3) e0174257 2013/03

    DOI: 10.1371/journal.pone.0174257  

    ISSN: 1932-6203

  47. Identification and characterization of sulfated carbohydrate-binding protein from Lactobacillus reuteri. International-journal Peer-reviewed

    Keita Nishiyama, Ayaka Ochiai, Daigo Tsubokawa, Kazuhiko Ishihara, Yuji Yamamoto, Takao Mukai

    PloS one 8 (12) e83703 2013

    DOI: 10.1371/journal.pone.0083703  

    More details Close

    We previously purified a putative sulfated-galactosylceramide (sulfatide)-binding protein with a molecular weight of 47 kDa from the cell surface of Lactobacillus reuteri JCM1081. The aim of this study was to identify the 47-kDa protein, examine its binding to sulfated glycolipids and mucins, and evaluate its role in bacterial adhesion to mucosal surfaces. By cloning and sequencing analysis, the 47-kDa protein was identified as elongation factor-Tu (EF-Tu). Adhesion properties were examined using 6 × Histidine-fused EF-Tu (His6-EF-Tu). Surface plasmon resonance analysis demonstrated pH-dependent binding of His6-EF-Tu to sulfated glycolipids, but not to neutral or sialylated glycolipids, suggesting that a sulfated galactose residue was responsible for EF-Tu binding. Furthermore, His6-EF-Tu was found to bind to porcine gastric mucin (PGM) by enzyme-linked immunosorbent assay. Binding was markedly reduced by sulfatase treatment of PGM and in the presence of acidic and desialylated oligosaccharide fractions containing sulfated carbohydrate residues prepared from PGM, demonstrating that sulfated carbohydrate moieties mediated binding. Histochemical staining revealed similar localization of His6-EF-Tu and high iron diamine staining in porcine mucosa. These results indicated that EF-Tu bound PGM via sulfated carbohydrate moieties. To characterize the contribution of EF-Tu to the interaction between bacterial cells and PGM, we tested whether anti-EF-Tu antibodies could inhibit the interaction. Binding of L. reuteri JCM1081 to PGM was significantly blocked in a concentration-dependent matter, demonstrating the involvement of EF-Tu in bacterial adhesion. In conclusion, the present results demonstrated, for the first time, that EF-Tu bound sulfated carbohydrate moieties of sulfated glycolipids and sulfomucin, thereby promoting adhesion of L. reuteri to mucosal surfaces.

  48. Isolation of Potential Probiotic Lactobacillus rhamnosus Strains from Traditional Fermented Mare Milk Produced in Sumbawa Island of Indonesia Peer-reviewed

    Tala Shi, Keita Nishiyama, Koichi Nakamata, Ni Putu Desy Aryantini, Dai Mikumo, Yuji Oda, Yuji Yamamoto, Takao Mukai, I. Nengah Sujaya, Tadasu Urashima, Kenji Fukuda

    BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY 76 (10) 1897-1903 2012/10

    DOI: 10.1271/bbb.120385  

    ISSN: 0916-8451

    eISSN: 1347-6947

Show all ︎Show first 5

Misc. 46

  1. Production of bioactive compounds through Food by-product metabolism by pig gut microbiota

    豊吉 瑛太, 生井 楓, 渡邊 真広, 吉田 安佑, 石原 沙耶花, 小田巻 俊, 大坪 和香, 前川 正充, 西山 啓太, 北澤 春樹

    日本畜産学会第 132 回大会 2024/08

  2. 腸-肺軸を介する「ポストイムノバイオティクス」の抗ウイルス免疫機能評価

    福山皓太朗, 福山皓太朗, 生井楓, 生井楓, 大坪和香子, 大坪和香子, 西山啓太, VILLENA Julio, VILLENA Julio, 北澤春樹, 北澤春樹

    日本畜産学会大会講演要旨 132nd 2024

    ISSN: 1342-4688

  3. 乳酸菌によるシアロオリゴ糖代謝から見た子豚の腸内細菌叢形成

    橋本凌河, 西山啓太, 生井楓, 鈴木香澄, 鈴木香澄, 福田伊津子, 杉山友太, 大坪和香子, 吉岡豪, 中崎瑛里, 北澤春樹

    ミルクサイエンス(Web) 73 (2) 2024

    ISSN: 2188-0700

  4. 腸内細菌の共生と消化管定着

    西山啓太

    関西大学先端科学技術シンポジウム講演集 28th 2024

  5. Development of piglet gut microbiota through sialo-oligosaccharide metabolism by lactic acid bacteria.

    橋本凌河, 西山啓太, 生井楓, 鈴木香澄, 鈴木香澄, 福田伊津子, 杉山友太, 豊吉瑛太, 佐久間大河, 大坪和香子, 吉岡豪, 中崎瑛里, 北澤春樹

    日本乳酸菌学会誌 35 (2) 2024

    ISSN: 1343-327X

  6. Colonization strategies of bifidobacteria, viewed from symbiotic relationships of gut bacteria

    西山啓太, 向井孝夫

    アグリバイオ 6 (14) 2023

    ISSN: 2432-5511

  7. Colonization strategies of gut bacteria, viewed from bacterial symbiosis

    西山啓太

    腸内細菌学雑誌 37 (2) 2023

    ISSN: 1343-0882

  8. 腸内細菌が産生する芳香族アミノ酸による腸管病原菌の感染制御

    西山啓太

    Institute for Fermentation, Osaka. Research Communications (37) 2023

    ISSN: 0073-8751

  9. 新規抗ウイルス性「ポストイムノバイオティクス」の選抜・機構解明

    今村圭哉, 今村圭哉, 荒木祥多, 荒木祥多, 生井楓, 生井楓, 宮崎綾子, 須田遊人, 大坪和香子, 大坪和香子, 西山啓太, 西山啓太, 北澤春樹, 北澤春樹

    日本畜産学会大会講演要旨 131st 2023

    ISSN: 1342-4688

  10. ブタ腸管上皮細胞においてミトコンドリア機能を改善するポストイムノバイオティクスの探索

    生井楓, 生井楓, 鈴木眞依, 笠原日菜子, 西山啓太, 西山啓太, 大坪和香子, 大坪和香子, 北澤春樹, 北澤春樹

    日本畜産学会大会講演要旨 131st 2023

    ISSN: 1342-4688

  11. 乳腺上皮細胞における乳成分の炎症制御に関する基礎的研究

    福山皓太朗, 生井楓, 生井楓, 周冰卉, 周冰卉, 大坪和香子, 大坪和香子, 西山啓太, 西山啓太, 麻生久, 麻生久, 北澤春樹, 北澤春樹

    ミルクサイエンス(Web) 72 (2) 2023

    ISSN: 2188-0700

  12. Impact of the sialic acid on gut microbiome and function

    西山啓太

    ミルクサイエンス(Web) 71 (1) 2022

    ISSN: 2188-0700

  13. Analysis of inhibition of egg development in Anopheles stephensi by Methylobacterium sp.

    箱崎純, 野々垣雄介, 田邊太志, 西山啓太, 中山和彦, 原口麻子, 中村咲蓮, 草木迫浩大, 筏井宏実

    衛生動物 73 (2) 2022

    ISSN: 0424-7086

  14. ウマ腸内細菌Streptococcus equinusによるイヌリンとセロビオースの菌株依存的資化性

    大坪和香子, 西村順子, 神山結斗, 周冰卉, 西山啓太, 北澤春樹

    日本ウマ科学会学術集会講演要旨集 35th 2022

  15. Glycan-mediated host-microbe interactions in the gut

    西山啓太

    ミルクサイエンス(Web) 70 (2) 2021

    ISSN: 2188-0700

  16. Colonization of Intestinal Bacteria in the Gut

    西山啓太

    Journal of Environmental Biotechnology (Web) 20 (1) 2020

    ISSN: 2436-5041

  17. Colonization of Lactic Acid Bacteria in the Gut

    西山啓太

    Bio Industry 37 (5) 2020

    ISSN: 0910-6545

  18. イムノバイオティックLactobacillus rhamnosusのMBFノックアウト株の樹立

    友常 加惠, 水野 滉也, 周 冰卉, Albarracin Leonardo, Islam Md Aminul, 西山 啓太, 大坪 和香子, Villena Julio, 佐々木 泰子, 北澤 春樹

    ミルクサイエンス 68 (2) 148-148 2019/08

    Publisher: 日本酪農科学会

    ISSN: 1343-0289

    eISSN: 2188-0700

  19. 組織透明化から紐解く腸内細菌の定着プロセス Invited

    西山啓太, 杉山真言

    academist Journal 2019/07

  20. イムノバイオティックLactobacillus rhamnosusのMBFノックアウト株の樹立

    友常加惠, 友常加惠, 友常加惠, 水野滉也, 水野滉也, 水野滉也, 周冰卉, 周冰卉, 周冰卉, ALBARRACIN Leonardo, ISLAM Md Aminul, ISLAM Md Aminul, ISLAM Md Aminul, 西山啓太, 大坪和香子, 大坪和香子, 大坪和香子, VILLENA Julio, 佐々木泰子, 北澤春樹, 北澤春樹, 北澤春樹

    ミルクサイエンス(Web) 68 (2) 2019

    ISSN: 2188-0700

  21. 腸内細菌の宿主消化管における定着戦略

    西山啓太

    環境バイオテクノロジー学会大会プログラム講演要旨集 2019 2019

  22. 腸内細菌の消化管ムチンとの相互作用を介した定着機構

    西山啓太

    日本食品科学工学会大会講演集 66th 2019

    ISSN: 2759-3843

  23. シアル酸をめぐる腸内での競争

    西山啓太

    生物工学会誌 96 (10) 595 2018/10/25

    ISSN: 0919-3758

  24. 消化管ムチンとの相互作用を介したビフィズス菌の定着戦略

    西山啓太, 岡田信彦

    バイオサイエンスとインダストリー 76 (4) 288‐291 2018/07/10

    ISSN: 0914-8981

  25. 組織透明化法を用いたムーンライティングタンパク質の腸管付着因子としての機能解析

    西山啓太, 杉山真言, 向井孝夫, 岡田信彦

    日本乳酸菌学会誌 29 (2) 110 2018/07/02

    ISSN: 1343-327X

  26. Bifidobacterium bifidumの細胞外シアリダーゼの腸粘液との相互作用と糖の資化における役割

    西山啓太, 長井暁, 吹谷智, 横田篤, 山本裕司, 向井孝夫, 岡田信彦

    腸内細菌学雑誌 32 (2) 102 2018/04

    ISSN: 1343-0882

  27. Factors involved in the interaction between Bifidobacterium and the host mucosal surface

    西山啓太, 向井孝夫

    日本乳酸菌学会誌 29 (1) 13‐18-18 2018/03/10

    Publisher: 日本乳酸菌学会

    ISSN: 1343-327X

  28. ビフィズス菌の宿主腸粘膜への定着に関わる菌体表層タンパク質の機能解析

    西山啓太

    日本乳酸菌学会誌 28 (3) 184‐185 2017/11/10

    ISSN: 1343-327X

  29. Bifidobacterium longum subsp.longumが有するFim線毛の腸管定着における役割とポリマー化に関わるモチーフの探索

    西山啓太, 菅原宏祐, 小田巻俊孝, 福田真嗣, 高木孝士, 山本裕司, 向井孝夫, 清水(肖)金忠, 岡田信彦, 大澤朗

    日本乳酸菌学会誌 28 (2) 129 2017/06/27

    ISSN: 1343-327X

  30. Bifidobacterium bifidumにおけるシアリダーゼは宿主との相互作用を促進し糖の資化をサポートする

    西山啓太, 山本裕司, 杉山真言, 篠原有香, 浦島匡, 吹谷智, 横田篤, 岡田信彦, 向井孝夫

    日本農芸化学会大会講演要旨集(Web) 2017 ROMBUNNO.3C18p05 (WEB ONLY) 2017/03/05

    ISSN: 2186-7976

  31. Bifidobacterium longum subsp.longumの有するBL0675線毛の多型がムチンへの付着性に及ぼす影響

    鏡谷竹生, 西山啓太, 大澤朗, 山本裕司, 向井孝夫

    ミルクサイエンス 66 (2) 2017

    ISSN: 1343-0289

  32. The elongation factor Tu from Lactobacillus reuteri inhibits the adhesion of Helicobacter pylori to porcine gastric mucin

    西山啓太, 鏡谷竹生, 山本裕司, 岡田信彦, 向井孝夫

    ミルクサイエンス 66 (1) 17‐26(J‐STAGE)-26 2017

    Publisher: 日本酪農科学会

    DOI: 10.11465/milk.66.17  

    ISSN: 1343-0289

    More details Close

    <p> <i>Helicobacter pylori</i> is a Gram-negative spiral-shaped microaerophilic bacterium that infects more than half of the world's population. Probiotic treatment may inhibit <i>H. pylori</i> infection by competition with the pathogen for the same receptor site (s) on the host mucosal surface. We previously found that <i>Lactobacillus reuteri</i> JCM1081 cell surface-associated elongation factor Tu (EF-Tu) was characterized as a sulfated carbohydrate-binding protein and may mediate adhesion of <i>H. pylori</i> to the host gastrointestinal tract. Here, we evaluated the role of EF-Tu in inhibiting <i>H. pylori</i> adhesion, using recombinant EF-Tu protein (His-EF-Tu). The addition of His-EF-Tu showed concentration-dependent inhibitory effects on the adhesion of <i>H. pylori</i> strains to porcine gastric mucin (PGM)-coated wells. Similar inhibitory effects were observed in <i>H. pylori</i> clinical isolates. Interestingly, sulfatase-treated PGM reduced <i>H. pylori</i> adhesion, whereas His-EF-Tu barely affected <i>H. pylori</i> adhesion on sulfatase-treated PGM. The inhibitory rate was similar to that of pretreatment with the sulfated carbohydrate recognition antibody PGM34. Western blotting revealed that EF-Tu was present in cell surface fractions isolated from several <i>Lactobacillus</i> strains. Thus, EF-Tu could inhibit the adhesion of several <i>H. pylori</i> strains, and the inhibitory effect may be mediated through competition of EF-Tu and <i>H. pylori</i> ligands for the same adhesion sites.</p>

  33. Study of the adherence properties of Lactobacillus and Bifidobacterium species to intestinal tract and application to the prevention of pathogenic infection

    西山啓太

    ミルクサイエンス 66 (3) 219‐226(J‐STAGE)-226 2017

    Publisher: 日本酪農科学会

    DOI: 10.11465/milk.66.219  

    ISSN: 1343-0289

    More details Close

    <p> <i>Lactobacillus</i>や<i>Bifidobacterium</i>は哺乳類の消化管に広く生息する共生細菌である。これらの細菌にとって宿主腸粘膜に対する付着性を有することは腸内環境での定着や生存を有利にすると考えられている。これまで筆者は,細菌と宿主腸粘膜の相互作用に着目し,<i>Lactobacillus</i>や<i>Bifidobacterium</i>において複数の付着因子を同定し特徴付けてきた。さらに見出された付着特性を利用し,病原細菌との付着部位の競合を利用した感染予防の有用性を証明してきた。本総説では,<i>Lactobacillus</i>による<i>Campylobacter</i>と<i>Helicobacter</i>の感染予防に関する取り組みとそのメカニズムについて論じるとともに,最近筆者らが見出した<i>Bifidobacterium</i>の糖質分解酵素を介した付着機構について紹介する。</p>

  34. Molecular insights into mucosal surface adhesion factors from Lactobacillus and Bifidobacterium species

    西山啓太, 向井孝夫

    日本乳酸菌学会誌 27 (3) 176‐186-186 2016/11/18

    Publisher: Japan Society for Lactic Acid Bacteria

    DOI: 10.4109/jslab.27.176  

    ISSN: 1343-327X

    More details Close

    Lactobacillus and Bifidobacterium species are natural inhabitants of the mammalian gastrointestinal (GI) tract. Adhesion to the mucosal surface is an important prerequisite for colonization of the GI tract by non-motile organisms in a constantly changing GI environment. The organisms capable of adhesion to the mucosal surface have a competitive advantage in this ecosystem. In recent years, the development of a repertoire of genetic tools and the advances in analytical techniques have markedly accelerated research aimed at elucidating the molecular mechanisms based on the ability of Lactobacillus and Bifidobacterium to recognize and adhere to mucosal components through diverse cell-surface macromolecules. This review provides molecular insights into the sortase-dependent adhesion factors such as mucus-binding proteins (MucBPs) and pilus, taking into account the findings of our recent study. Moreover, we introduce the competitive exclusion of pathogenic bacteria by Lactobacillus via their adhesion factors.

  35. プロバイオティクスに関する最近の研究動向~乳酸菌やビフィズス菌のムチンとの相互作用~

    向井孝夫, 西山啓太

    乳業技術 65 23‐40 2016/07/01

    ISSN: 1341-7878

  36. 乳酸菌によるカンピロバクターの感染予防とその作用機序の解明に向けた研究

    西山 啓太, 向井 孝夫

    畜産技術 = Livestock technology (730) 2-6 2016/03

    Publisher: 畜産技術協会

    ISSN: 0389-1348

  37. Colonization Properties of Lactic Acid Bacteria to Mucosal Surface of the Intestinal Tract

    NISHIYAMA Keita, MUKAI Takao

    KAGAKU TO SEIBUTSU 54 (7) 471-477 2016

    Publisher: Japan Society for Bioscience, Biotechnology, and Agrochemistry

    DOI: 10.1271/kagakutoseibutsu.54.471  

    ISSN: 0453-073X

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    乳酸菌は,哺乳類の小腸から大腸に広く棲息するグラム陽性細菌である.乳酸菌を構成する最大の属である<i>Lactobacillus</i>属は,多岐にわたる有用効果が報告されており,近年では,民間伝承的な健康増進効果にとどまらず予防医学への応用も期待されている.一般に乳酸菌は積極的に摂取され宿主消化管で定着することが求められることから,複雑な腸内フローラを形成する消化管において,摂取された乳酸菌がどのようなプロセスを経て定着・共生することができるのか興味深い点である.本解説では,乳酸菌の生存戦略の一つである腸粘膜への付着に着目し,特にアドヘシン(付着因子)の細胞表層への提示機構とその役割について解説する.

  38. Molecular insights into mucosal surface adhesion factors from Lactobacillus and Bifidobacterium species

    Nishiyama Keita, Mukai Takao

    Jpn. J. Lactic Acid Bact. 27 (3) 176-186 2016

    Publisher: Japan Society for Lactic Acid Bacteria

    DOI: 10.4109/jslab.27.176  

    ISSN: 1343-327X

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    <i>Lactobacillus</i> and <i>Bifidobacterium</i> species are natural inhabitants of the mammalian gastrointestinal (GI) tract. Adhesion to the mucosal surface is an important prerequisite for colonization of the GI tract by non-motile organisms in a constantly changing GI environment. The organisms capable of adhesion to the mucosal surface have a competitive advantage in this ecosystem. In recent years, the development of a repertoire of genetic tools and the advances in analytical techniques have markedly accelerated research aimed at elucidating the molecular mechanisms based on the ability of <i>Lactobacillus</i> and <i>Bifidobacterium</i> to recognize and adhere to mucosal components through diverse cell-surface macromolecules. This review provides molecular insights into the sortase-dependent adhesion factors such as mucus-binding proteins (MucBPs) and pilus, taking into account the findings of our recent study. Moreover, we introduce the competitive exclusion of pathogenic bacteria by <i>Lactobacillus</i> via their adhesion factors.

  39. Prevention of pathogenic infection by probiotics

    西山 啓太, 向井 孝夫

    ミルクサイエンス = Milk science 64 (3) 245-253 2015/12

    Publisher: 日本酪農科学会

    ISSN: 1343-0289

  40. ビフィズス菌におけるシアリダーゼのムチン付着因子としての新たな役割

    西山啓太, 西山啓太, 篠原有香, 浦島匡, 吹谷智, 横田篤, 山本裕司, 向井孝夫

    日本乳酸菌学会誌 26 (2) 2015

    ISSN: 1343-327X

  41. 乳酸菌とムチンの相互作用 : 糖鎖を介した乳酸菌の腸粘膜への付着機構 (特集 乳に係わる糖鎖研究の最前線)

    西山 啓太, 向井 孝夫

    応用糖質科学 : 日本応用糖質科学会誌 5 (1) 38-43 2015

    Publisher: 日本応用糖質科学会

    ISSN: 2185-6427

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    乳酸菌は古くから世界中でヨーグルトなど様々な発酵食品の製造に用いられてきた我々の生活に深く結びついた細菌である。I.I. Mechnikovがヨーグルトによる不老長寿説を唱えて以来,乳酸菌の有用性について興味・関心が集まり,多くの研究者によって乳酸菌のもつ機能性が明らかにされてきた。すなわち,免疫賦活作用,感染防御作用,整腸作用など宿主に対して有用な効果を発揮し健康維持に役立つ乳酸菌はプロバイオティクスとして知られてきた。一方,乳酸菌の主な棲息域である十二指腸から小腸下部の腸粘膜には多数の粘液産生細胞が存在し,ムチン糖タンパク質を主成分とするムチン層に覆われている。ムチン層は,様々な物理的刺激や消化液,病原細菌の感染から腸粘膜を保護する役割に加え,腸内細菌の棲息の場として知られており,乳酸菌もムチンを消化管での定着の足掛かりとしていると考えられてきた。したがって,経口的に摂取された乳酸菌が流動的な腸内環境中でプロバイオティクス効果を持続的に発揮する要素の1つとしてムチンへの付着性が注目され,これまでにムチンに付着性を示すいくつかの乳酸菌とその付着機構が報告されてきた。また,ムチンとの相互作用を理解することは,乳酸菌のプロバイオティクスとしての利用のみならず腸内細菌としての生存戦略を考える上でも非常に興味に深い研究対象である。本稿では,乳酸菌とムチンの相互作用について最新の報告を取り入れながら,腸内環境中における乳酸菌の巧みな腸内定着機構について解説したい。

  42. Current trends of probiotics research : focused on the interactions between mucosal surface and commensal bacteria including Lactobacillus spp. and Bifidobacterium spp.

    向井 孝夫, 西山 啓太

    乳業技術 65 23-40 2015

    Publisher: 日本乳業技術協会

    ISSN: 1341-7878

  43. ビフィズス菌由来シアリダーゼのムチン付着因子としての評価

    西山啓太, 吹谷智, 横田篤, 山本裕司, 向井孝夫

    日本畜産学会大会講演要旨 118th 2014

    ISSN: 1342-4688

  44. Lactobacillus reuteriにおけるElongation factor Tuのシグナル配列非依存的な分泌機構に関する研究

    西山啓太, 山本裕司, 向井孝夫

    日本乳酸菌学会誌 25 (2) 2014

    ISSN: 1343-327X

  45. ビフィズス菌のシアリダーゼは付着因子として機能する

    西山啓太, 吹谷智, 横田篤, 山本裕司, 向井孝夫

    ミルクサイエンス 63 (2) 2014

    ISSN: 1343-0289

  46. シグナル配列非依存的に分泌される多機能タンパク質の役割と提示機構

    西山 啓太, 山本 裕司, 向井 孝夫

    日本乳酸菌学会誌 = Journal of Japan Society for Lactic Acid Bacteria 24 (2) 2013/06/20

    ISSN: 1343-327X

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Industrial Property Rights 2

  1. 抗ヘリコバクター・ハイルマニー剤

    瀬戸 泰幸, 東 直樹, 向井 孝夫, 中村 正彦, 松井 英則, 山本 裕司, 西山 啓太

    Property Type: Patent

  2. ビフィドバクテリウム属細菌の線毛形成誘導用の組成物

    西山啓太, 小山信裕, 大澤朗, 岡田信彦, 清水金忠, 向井孝夫, 供田洋

    Property Type: Patent

Research Projects 11

  1. Understanding the Intestinal Survival Strategy of Altruistic Bifidobacteria by Human Glycan Binding from the Molecular Structure

    Offer Organization: Japan Society for the Promotion of Science

    System: Grants-in-Aid for Scientific Research

    Category: Grant-in-Aid for Scientific Research (A)

    Institution: The University of Tokyo

    2023/04/01 - 2028/03/31

  2. 家畜健全育成向上戦略:イムノバイオティクスと自然免疫受容体の腸-肺軸シンフォニー

    北澤 春樹, 西山 啓太, 大坪 和香子, Binghui Zhou, 野地 智法, 竹之内 敬人, 新開 浩樹, 須田 義人

    Offer Organization: 日本学術振興会

    System: 科学研究費助成事業

    Category: 基盤研究(A)

    Institution: 東北大学

    2023/04/01 - 2027/03/31

  3. 細菌の定着性強化に向けた基盤技術創製ーバイオフィルム形成に学ぶー

    小川 哲弘, 西山 啓太, 田川 陽一, 角田 茂

    Offer Organization: 日本学術振興会

    System: 科学研究費助成事業

    Category: 基盤研究(B)

    Institution: 東京大学

    2023/04/01 - 2026/03/31

  4. 細菌の定着性強化に向けた基盤技術創製ーバイオフィルム形成に学ぶー

    小川 哲弘, 角田 茂, 田川 陽一, 西山 啓太

    Offer Organization: 日本学術振興会

    System: 科学研究費助成事業

    Category: 基盤研究(B)

    Institution: 東京大学

    2023/04/01 - 2026/03/31

  5. 腸内細菌を有効活用した家畜健全育成に貢献する機能性エコフィードの開発基盤創成

    西山 啓太, 北澤 春樹, 生井 楓

    Offer Organization: 日本学術振興会

    System: 科学研究費助成事業

    Category: 基盤研究(B)

    Institution: 東北大学

    2023/04/01 - 2026/03/31

  6. シアロオリゴ糖代謝を起点とした腸内細菌と宿主の共生機構の解明

    阪中 幹祥, 西山 啓太, 杉山 友太

    Offer Organization: 日本学術振興会

    System: 科学研究費助成事業

    Category: 基盤研究(B)

    Institution: 京都大学

    2023/04/01 - 2026/03/31

  7. ブタ小腸フローラ・免疫制御システムの統合評価系構築

    北澤 春樹, 西山 啓太, Binghui Zhou

    Offer Organization: 日本学術振興会

    System: 科学研究費助成事業

    Category: 挑戦的研究(萌芽)

    Institution: 東北大学

    2023/06/30 - 2025/03/31

  8. 腸内細菌が産生する芳香族化合物による真菌の感染制御

    西山 啓太

    Offer Organization: 日本学術振興会

    System: 科学研究費助成事業 基盤研究(C)

    Category: 基盤研究(C)

    Institution: 慶應義塾大学

    2022/04/01 - 2025/03/31

  9. The bifidobacterial gut colonization strategies based on communication between complex symbiotic intestinal microbes

    Nishiyama Keita

    Offer Organization: Japan Society for the Promotion of Science

    System: Grants-in-Aid for Scientific Research

    Category: Grant-in-Aid for Early-Career Scientists

    Institution: Keio University

    2020/04/01 - 2022/03/31

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    The gut microbiome converts aromatic amino acids to several metabolites that potentially regulate biological processes. Here, we show that metabolite 'AAA', produced by intestinal bacteria, upregulates the gene expression of fimbriae of Bifidobacterium, thereby dynamically inducing fimbriae elongation. AAA promoted the intestinal colonization of commensal bacteria, and inhibited the growth of gram-negative pathogenic bacteria through cell membrane disruption. Furthermore, we found that AAA was produced by metabolic exchange between two bacterial species, Bacteroides and Lactobacillus. This study revealed that AAA can act as a signaling molecule that significantly modulates bacterial colonization in the intestine. These findings demonstrate the existence of AAA-mediated trans-species dialogue between microorganisms and provide new insights into understanding the formation and maintenance of human gut microbiota.

  10. A typical signal sequence-independent export mechanism of elongation factor Tu in lactic acid bacteria

    NISHIYAMA Keita

    Offer Organization: Japan Society for the Promotion of Science

    System: Grants-in-Aid for Scientific Research

    Category: Grant-in-Aid for Young Scientists (B)

    2017/04/01 - 2020/03/31

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    Several cytoplasmic proteins such as elongation factor Tu (EF-Tu), which lack a typical N-terminal export signal sequence, have been found to be localized outside the cell in several Lactobacillus strains. EF-Tu often exert additional functions as a bacterial adhesion factor. However, the mechanism underlying the N-terminal typical signal sequence-independent export of these cytoplasmic proteins is largely unknown. Here we identified the secretion of EF-Tu depends on the C-terminal sequence containing certain hydrophobic amino acid residues and that the sequence contributes to the membrane export processes. This study improves our understanding of the Lactobacillus colonization strategy in the intestinal environment.

  11. Characterization of bifidobacterial glycosidase: a new colonization factor that promotes bacterial adhesion to the intestinal mucin

    Nishiyama Keita, Okada Nobuhiko, Mukai Takao, Yamamoto Yuji, Yokota Atsushi, Fukiya Satoru, Urashima Tadasu

    Offer Organization: Japan Society for the Promotion of Science

    System: Grants-in-Aid for Scientific Research Grant-in-Aid for Research Activity start-up

    Category: Grant-in-Aid for Research Activity start-up

    Institution: Kitasato University

    2015/08/28 - 2017/03/31

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    Bifidobacterium is a natural inhabitant of the human gastrointestinal tract. I studied the role of sialidase (SiaBb2) from Bifidobacterium bifidum in gut colonization and carbohydrate catabolism. SiaBb2 cleaves sialyl-human milk oligosaccharides to produce usable oligosaccharides, thus supporting B. bifidum growth. Moreover, SiaBb2 promotes B. bifidum adhesion to mucosal surfaces. This study provides new insights into the role of B. bifidum sialidase as a bifunctional extracellular enzyme that is crucially important for B. bifidum colonization of the gut.

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