Details of the Researcher

PHOTO

Yusdar Mustamin
Section
Graduate School of Life Sciences
Job title
Assistant Professor
Degree

  • Ph.D. (Life Sciences) (Tohoku University)

e-Rad No.
51026810

Research History 3

  • 2022/08 - Present
    Tohoku University　Graduate School of Life Sciences　Assistant Professor

  • 2020/10 - 2022/07
    Tohoku University　Graduate School of Life Sciences　Postdoctoral Researcher

  • 2017/10 - 2020/09
    Tohoku University　Graduate School of Life Sciences　MEXT Scholar

Education 3

  • Tohoku University　Graduate School of Life Sciences

    2017 - 2020

  • Bogor Agricultural University　Plant Biology

    2014 - 2017

  • Hasanuddin University　Biology

    2009 - 2013

Professional Memberships 1

  • Japanese Society of Plant-Microbe Interactions

Research Interests 9

  • Plant physiology

  • Genomics

  • Synthetic microbial communities

  • Plant-microbe interactions

  • Plant cold tolerance

  • Lotus japonicus

  • Transcriptomics

  • Plant-environment interaction

  • Molecular biology

Research Areas 3

  • Environmental science/Agricultural science / Plant genetics and breeding /

  • Life sciences / Plants: molecular biology and physiology /

  • Life sciences / Evolutionary biology /

Awards 1

  1. Best Poster Award

    2018　The 6th Plant Dormancy Symposium

Papers 6

  1. Microbiome interactions increase plant haplotype richness

    Stig Andersen, Johan Quilbé, Troels Mouritzen, Turgut Akyol, Yusdar Mustamin, Masaru Bamba, Mikkel Schierup, Shusei Sato

    2024/10/08

    DOI： 10.21203/rs.3.rs-5130034/v1 　

  2. Daily Activity and Honey Production Patterns of Tetragonula laeviceps Smith (Hymenoptera: Apidae) During the Wet and Dry Seasons

    Andi Gita Maulidyah Indraswari Suhri, Bambang Retnoaji, Yusdar Mustamin, Sih Kahono

    Journal of Tropical Biodiversity and Biotechnology　2024/10/01

    DOI： 10.22146/jtbb.84083 　

  3. FER and LecRK show haplotype-dependent cold-responsiveness and mediate freezing tolerance in Lotus japonicus Peer-reviewed

    Yusdar Mustamin, Turgut Yigit Akyol, Max Gordon, Andi Madihah Manggabarani, Yoshiko Isomura, Yasuko Kawamura, Masaru Bamba, Cranos Williams, Stig Uggerhøj Andersen, Shusei Sato

    Plant Physiology　2022/11/30

    Publisher: Oxford University Press (OUP)

    DOI： 10.1093/plphys/kiac533 　

    ISSN： 0032-0889

    eISSN： 1532-2548

    More details Close

    ABSTRACT Many plant species have succeeded in colonizing a wide range of diverse climates through local adaptation, but the underlying molecular genetics remain obscure. We previously found that winter survival was a direct target of selection during colonization of Japan by the perennial legume Lotus japonicus and identified associated candidate genes. Here, we show that two of these, FERONIA-receptor like kinase (LjFER) and a S-receptor-like kinase gene (LjLecRK) are required for non-acclimated freezing tolerance and show haplotype-dependent cold-responsive expression. Our work suggests that recruiting a conserved growth regulator gene, FER, and a receptor-like kinase gene, LecRK, into the set of cold-responsive genes has contributed to freezing tolerance and local climate adaptation in L. japonicus, offering functional genetic insight into perennial herb evolution.

  4. Construction of prediction models for growth traits of soybean cultivars based on phenotyping in diverse genotype and environment combinations. International-journal

    Andi Madihah Manggabarani, Takuyu Hashiguchi, Masatsugu Hashiguchi, Atsushi Hayashi, Masataka Kikuchi, Yusdar Mustamin, Masaru Bamba, Kunihiro Kodama, Takanari Tanabata, Sachiko Isobe, Hidenori Tanaka, Ryo Akashi, Akihiro Nakaya, Shusei Sato

    DNA research : an international journal for rapid publication of reports on genes and genomes　29　(4)　2022/06/25

    DOI： 10.1093/dnares/dsac024 　

    More details Close

    As soybean cultivars are adapted to a relatively narrow range of latitude, the effects of climate changes are estimated to be severe. To address this issue, it is important to improve our understanding of the effects of climate change by applying the simulation model including both genetic and environmental factors with their interactions (G×E). To achieve this goal, we conducted the field experiments for soybean core collections using multiple sowing times in multi-latitudinal fields. Sowing time shifts altered the flowering time (FT) and growth phenotypes, and resulted in increasing the combinations of genotypes and environments. Genome-wide association studies for the obtained phenotypes revealed the effects of field and sowing time to the significance of detected alleles, indicating the presence of G×E. By using accumulated phenotypic and environmental data in 2018 and 2019, we constructed multiple regression models for FT and growth pattern. Applicability of the constructed models was evaluated by the field experiments in 2020 including a novel field, and high correlation between the predicted and measured values was observed, suggesting the robustness of the models. The models presented here would allow us to predict the phenotype of the core collections in a given environment.

  5. Receptor-like kinases FER and SRK mediate Lotus japonicus freezing tolerance and climate adaptation

    Yusdar Mustamin, Turgut Yigit Akyol, Max Gordon, Andi Madihah Manggabarani, Yoshiko Isomura, Yasuko Kawamura, Masaru Bamba, Cranos Williams, Stig Uggerhøj Andersen, Shusei Sato

    2022/04/28

    Publisher: Cold Spring Harbor Laboratory

    DOI： 10.1101/2022.04.27.489728 　

    More details Close

    ABSTRACT Many plant species have succeeded in colonizing a wide range of diverse climates through local adaptation, but the underlying molecular genetics remain obscure. We previously found that winter survival was a direct target of selection during colonization of Japan by the perennial legume Lotus japonicus and identified associated candidate genes. Here, we show that two of these, the FERONIA-receptor like kinase (LjFER) and a novel S-receptor-like kinase (LjSRK) are required for non-acclimated freezing tolerance and show haplotype-dependent cold-responsive expression. Our work demonstrates that recruiting a conserved growth regulator, FER, and a novel receptor-like kinase, SRK, into the set of cold-responsive genes has contributed to freezing tolerance and local climate adaptation in L. japonicus, offering new functional genetic insight into perennial herb evolution.

  6. Extreme genetic signatures of local adaptation during Lotus japonicus colonization of Japan. International-journal

    Niraj Shah, Tomomi Wakabayashi, Yasuko Kawamura, Cathrine Kiel Skovbjerg, Ming-Zhuo Wang, Yusdar Mustamin, Yoshiko Isomura, Vikas Gupta, Haojie Jin, Terry Mun, Niels Sandal, Fuyuki Azuma, Eigo Fukai, Ümit Seren, Shohei Kusakabe, Yuki Kikuchi, Shogo Nitanda, Takashi Kumaki, Masatsugu Hashiguchi, Hidenori Tanaka, Atsushi Hayashi, Mads Sønderkær, Kaare Lehmann Nielsen, Korbinian Schneeberger, Bjarni Vilhjalmsson, Ryo Akashi, Jens Stougaard, Shusei Sato, Mikkel Heide Schierup, Stig Uggerhøj Andersen

    Nature communications　11　(1)　253-253　2020/01/14

    DOI： 10.1038/s41467-019-14213-y 　

    More details Close

    Colonization of new habitats is expected to require genetic adaptations to overcome environmental challenges. Here, we use full genome re-sequencing and extensive common garden experiments to investigate demographic and selective processes associated with colonization of Japan by Lotus japonicus over the past ~20,000 years. Based on patterns of genomic variation, we infer the details of the colonization process where L. japonicus gradually spread from subtropical conditions to much colder climates in northern Japan. We identify genomic regions with extreme genetic differentiation between northern and southern subpopulations and perform population structure-corrected association mapping of phenotypic traits measured in a common garden. Comparing the results of these analyses, we find that signatures of extreme subpopulation differentiation overlap strongly with phenotype association signals for overwintering and flowering time traits. Our results provide evidence that these traits were direct targets of selection during colonization and point to associated candidate genes.

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Presentations 24

  1. Suppression mechanism of nodule formation triggered by a rhizobial type III effector in Lotus japonicus

    2025/09/17

  2. Uncovering host genotype–soil microbiota compatibility driving growth promotion in Lotus japonicus

    Yusdar Mustamin, Satomi Nozawa, Masaru Bamba, Turgut Yigit Akyol, Johan B., Quilbe, Stig U. Andersen, Shusei Sato

    The 34th annual meeting, Japanese Society of Plant Microbe Interactions　2025/09/18

  3. Balancing selection shapes root microbiome regulation in Lotus japonicus

    Johan Quilbé, Troels W. Mouritzen, Turgut Akyol, Yusdar Mustamin, Masaru Bamba, Shusei Sato, Stig Uggerhøj Andersen

    2025 International Society for Molecular Plant-Microbe Interactions (IS-MPMI) Congress, Cologne, Germany　2025/07/14

  4. 根粒菌エフェクターに起因するミヤコグサの根粒共生制御機構の解析

    橋本 駿, 番場 大, 日下部 翔平, Yusdar Mustamin, 高澤 瑞希, Ying Cui, Piromyou Pongde, Songwattana Pongpan, Tittabutr Panlada, Boonkerd Nantakorn, Teaumroong Neung, 金子 貴一, 岡崎 伸, 内海 俊樹, 三井 久幸, 佐藤 修正

    日本植物学会 第88回大会　2024/09/16

  5. Establishment of the root-associated bacterial culture collection of Lotus japonicus and its application in analyzing host genotype-dependent interactions

    Yusdar Mustamin, Masaru Bamba, Turgut Yigit Akyol, Johan Quilbe, Stig U. Andersen, Shusei Sato

    The 33rd annual meeting, Japanese Society of Plant-Microbe Interaction　2024/08/28

  6. 根粒菌エフェクターに起因するミヤコグサの根粒共生制御に関わる遺伝子の探索

    橋本 駿, 番場 大, 日下部 翔平, Yusdar Mustamin, 高澤 瑞希, Ying Cui, Piromyou Pongde, Songwattana Pongpan, Tittabutr Panlada, Boonkerd Nantakorn, Teaumroong Neung, 金子 貴一, 岡崎 伸, 内海 俊樹, 三井 久幸, 佐藤 修正

    第33回研究交流会 植物微⽣物研究会　2024/08/28

  7. Unveiling the role of ROOMIE1 in root microbiome dynamics: insights from natural variation in Lotus japonicus

    Johan Quilbé, Troels W. Mouritzen, Turgut Akyol, Yusdar Mustamin, Masaru Bamba, Shusei Sato, Stig Uggerhøj Andersen

    5th Plant Microbiome Symposium 2024 Amsterdam

  8. Elucidation of local climate adaptation using natural variation Invited

    Yusdar Mustamin

    3rd GP-DS Data Science Cafe, GSIS Tohoku University　2024/06/19

  9. ミヤコグサ PINK4 遺伝子の機能と細胞内共生成立後の根粒菌共生制御

    嵐田遥, 中川知己, 橋本駿, 番場大, Mustamin Yusdar, 三井久幸, 佐伯和彦, 川口正代司, 佐藤修正

    第65回日本植物生理学会年会　2024/03/17

  10. Regulation of rhizobial symbiosis after the establishment of endosymbiosis by PINK4 gene in Lotus japonicus

    Haruka Arashida, Tomomi Nakagawa, Shun Hashimoto, Masaru Bamba, Yusdar Mustamin, Hisayuki Mitsui, Shusei Sato

    The 32nd annual meeting of Japanese society of plant-microbe interactions　2023/09/27

  11. Analysis of local climate adaptation using natural variation

    Yusdar Mustamin

    CUT - Plant Science Meeting　2023/09/04

  12. ミヤコグサ・ダイズの野生系統リソースの情報整備とその活用

    佐藤修正, Yusdar Mustamin, 番場大, 橋本駿, 橋口正嗣, 橋口拓勇, 田中秀典

    第64回日本植物生理学会年会シンポジウム　2023/03/13

  13. 細胞内共生成立後の根粒菌選別機構に関わるミヤコグサPINK4遺伝子の機能解析

    嵐田 遥, 中川 知巳, 眞板 寛子, 日下部 翔平, 番場 大, Yusdar Mustamin, 佐藤 修正

    植物微生物研究会 第31回研究交流会　2022/09/08

  14. Identifying the candidate genes mediate freezing tolerance and climate adaptation in plants Invited

    Yusdar Mustamin

    Ege University International Fascination of Plants Day 2022 Symposium　2022/05/18

  15. ミヤコグサリソースを活用した環境適応機構の解析

    佐藤修正, Yusdar Mustamin, 番場大, Turgut Yigit Akyol, Stig U Andersen, 橋口正嗣, 橋口拓勇, 田中秀典, 明石良

    第63回日本植物生理学会年会シンポジウム　2022/03/22

  16. 圃場栽培したミヤコグサの表現型を制御するゲノム領域の解析：画像解析を利用したアプローチ

    高橋 隼, 番場 大, 三岡 周子, Yusdar Mustamin, Andi Madihah Manggabarani, 磯村 芳子, 林 篤司, 七夕 高也, 橋口 拓勇, 橋口 正嗣, 佐藤 修正

    日本植物学会第85回大会　2021/09/16

  17. ミヤコグサ関連リソースの最新状況とその応用

    佐藤修正, Yusdar Mustamin, Madihah Manggabarani, 番場 大, Turgut Akyol, Stig Andersen, Nadia Kamal, Klaus Mayer, 橋口正嗣, 田中秀典, 明石 良

    第62回日本植物生理学会　2021/03/14

  18. NBRPミヤコグサ・ダイズのリソースの最新状況

    佐藤修正, 磯村芳子, Yusdar Mustamin, Andi Madihah Manggabarani, Stig U Andersen, Kamal N, Mayer K, 橋口正嗣, 田中秀典, 明石良

    第61回日本植物生理学会年会　2020/03/19

  19. ミヤコグサ野生系統の耐塩性戦略とその地域適応との関連

    磯村芳子, 佐藤修正, Yusdar Mustamin, Andi Madihah Manggabarani, Stig Andersen

    第61回日本植物生理学会年会　2020/03/19

  20. Application of updated resources in the National BioResource Project Lotus/Glycine

    Shusei Sato, Shohei Kusakabe, Yoshiko Isomura, Yusdar Mustamin, Madihah Manggabarani, Stig Andersen, Vikas Gupta, Nadia Kamal, Klaus Mayer, Masatsugu Hashiguchi, Hidenori Tanaka, Ryo Akashi

    21st International Congress on Nitrogen Fixation (ICNF 2019)　2019/10/10

  21. Application of updated resources of the experimental model legume, Lotus japonicus

    Shusei Sato, Yoshiko Isomura, Yusdar Mustamin, Madihah Manggabarani, Shohei Kusakabe, Stig Andersen, Vikas Gupta, Nadia Kamal, Klaus Mayer, Masatsugu Hashiguchi, Hidenori Tanaka, Ryo Akashi

    5th Asian Conference on Plant-Microbe Symbiosis and Nitrogen Fixation　2019/05/15

  22. Genome-wide association study of winter hardiness phenotype in Lotus japonicus wild accession under field conditions

    Yusdar Mustamin, Yasuko Kawamura, Stig U. Andersen, Shusei Sato

    6th Plant Dormancy Symposium　2018/10/23

  23. Re-sequencing of wild accessions of Lotus japonicus and genome-wide association analysis of winter hardiness under field conditions

    Yasuko Kawamura, Yuki Kikuchi, Shohei Kusakabe, Shougo Nitanda, Yusdar Mustamin, Ming-Zhuo Wang, Tomomi Wakabayashi, Hideki Hirakawa, Niraj Shah, Vikas Gupta, Stig Andersen, Shusei Sato

    The 59th Annual Meeting of the Japanese Society of Plant Physiologists　2018/03/28

  24. Introduction of foreign genes in transgenic plants as new resistance mechanisms to bacterial disease

    Yusdar Mustamin, Utut Widyastuti, Sony Suharsono

    2nd University Consortium Graduate Forum (UCGF) – Southeast Asian Regional Center for Graduate Study and Research in Agriculture (SEARCA), Los Baños, Philippines.

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Academic Activities 1

  1. CCRP Visiting Scholars

    Aarhus University, Denmark

    2022/11 - 2022/12

    Activity type: Academic research