-
Evaluation of community science monitoring with environmental <scp>DNA</scp> for marine fish species: “Fish survey project using environmental <scp>DNA</scp> ”
Peer-reviewed
Yukari Suzuki‐Ohno, Akifumi S. Tanabe, Akihide Kasai, Reiji Masuda, Satoquo Seino, Akihiro Dazai, Shota Suzuki, Takuzo Abe, Michio Kondoh
Environmental DNA 2023/04/18
Publisher:
Wiley
DOI：
10.1002/edn3.425
ISSN：
2637-4943
eISSN：
2637-4943
-
Specialized mycorrhizal association between a partially mycoheterotrophic orchid Oreorchis indica and a Tomentella taxon
Kenji Suetsugu, Takashi F. Haraguchi, Akifumi S. Tanabe, Ichiro Tayasu
Mycorrhiza 31 (2) 243-250 2021/03
DOI：
10.1007/s00572-020-00999-z
ISSN：
0940-6360
eISSN：
1432-1890
-
Specialized mycorrhizal association between a partially mycoheterotrophic orchid Oreorchis indica and a Tomentella taxon
Kenji Suetsugu, Takashi F. Haraguchi, Akifumi S. Tanabe, Ichiro Tayasu
MYCORRHIZA 31 (2) 243-250 2021/03
DOI：
10.1007/s00572-020-00999-z
ISSN：
0940-6360
eISSN：
1432-1890
-
Mycorrhizal communities of two closely related species, Pyrola subaphylla and P. japonica, with contrasting degrees of mycoheterotrophy in a sympatric habitat
Kenji Suetsugu, Shunsuke Matsuoka, Kohtaroh Shutoh, Hidehito Okada, Shintaro Taketomi, Kaede Onimaru, Akifumi S. Tanabe, Hiroki Yamanaka
Mycorrhiza 31 (2) 219-229 2021/03
Publisher:
Springer Science and Business Media LLC
DOI：
10.1007/s00572-020-01002-5
ISSN：
0940-6360
eISSN：
1432-1890
-
Aboveground herbivores drive stronger plant species-specific feedback than belowground fungi to regulate tree community assembly
Kohmei Kadowaki, Satoshi Yamamoto, Hirotoshi Sato, Akifumi S. Tanabe, Hirokazu Toju
Oecologia 2021/02/18
Publisher:
Springer Science and Business Media LLC
DOI：
10.1007/s00442-021-04868-0
ISSN：
0029-8549
eISSN：
1432-1939
-
Isotopic and molecular data support mixotrophy in Ophioglossum at the sporophytic stage
Peer-reviewed
Kenji Suetsugu, Shintaro Taketomi, Akifumi S. Tanabe, Takashi F. Haraguchi, Ichiro Tayasu, Hirokazu Toju
New Phytologist 2020/03/11
DOI：
10.1111/nph.16534
-
Rapid detection of macroalgal seed bank on cobbles: application of DNA metabarcoding using next-generation sequencing
Peer-reviewed
Journal of Applied Phycology 2019/08
DOI：
10.1007/s10811-018-1730-9
ISSN：
1573-5176 0921-8971
-
Primer Design, Evaluation of Primer Universality, and Estimation of Identification Power of Amplicon Sequences In Silico
Peer-reviewed
Marine Metagenomics 2019
DOI：
10.1007/978-981-13-8134-8_3
-
Mycorrhizal fungi mediate the direction and strength of plant-soil feedbacks differently between arbuscular mycorrhizal and ectomycorrhizal communities.
Peer-reviewed
Kadowaki K, Yamamoto S, Sato H, Tanabe AS, Hidaka A, Toju H
Communications biology 1 196 2018/12
DOI：
10.1038/s42003-018-0201-9
ISSN：
2399-3642
-
Structural diversity across arbuscular mycorrhizal, ectomycorrhizal, and endophytic plant-fungus networks.
Peer-reviewed
Toju H, Sato H, Yamamoto S, Tanabe AS
BMC plant biology 18 (1) 292 2018/11
DOI：
10.1186/s12870-018-1500-5
ISSN：
1471-2229
-
Improving the standards for gut microbiome analysis of fecal samples: insights from the field biology of Japanese macaques on Yakushima Island
Peer-reviewed
Hayakawa, Takashi, Sawada, Akiko, Tanabe, Akifumi S., Fukuda, Shinji, Kishida, Takushi, Kurihara, Yosuke, Matsushima, Kei, Liu, Jie, Akomo-Okoue, Etienne-Francois, Gravena, Waleska, Kashima, Makoto, Suzuki, Mariko, Kadowaki, Kohmei, Suzumura, Takafumi, Inoue, Eiji, Sugiura, Hideki, Hanya, Goro, Agata, Kiyokazu
PRIMATES 59 (5) 423-436 2018/09
DOI：
10.1007/s10329-018-0671-x
ISSN：
0032-8332
eISSN：
1610-7365
-
Composition and Diversity of Soil Fungi in Dipterocarpaceae-Dominated Seasonal Tropical Forests in Thailand.
Peer-reviewed
Amma S, Toju H, Wachrinrat C, Sato H, Tanabe AS, Artchawakom T, Kanzaki M
Microbes and environments 33 (2) 135-143 2018/07
Publisher:
Japanese Society of Microbial Ecology
DOI：
10.1264/jsme2.ME17168
ISSN：
1342-6311
eISSN：
1347-4405
-
Network hubs in root-associated fungal metacommunities
Peer-reviewed
Hirokazu Toju, Akifumi S. Tanabe, Hirotoshi Sato
Microbiome 6 (1) 116 2018/06/23
Publisher:
BioMed Central Ltd.
DOI：
10.1186/s40168-018-0497-1
ISSN：
2049-2618
-
The fauna of freshwater calanoid copepods in Japan in the early decades of the 21st Century: Implications for the assessment and conservation of biodiversity
Peer-reviewed
Wataru Makino, Akifumi S. Tanabe, Jotaro Urabe
Limnology and Oceanography 63 (2) 758-772 2018/03/01
Publisher:
Wiley Blackwell
DOI：
10.1002/lno.10667
ISSN：
1939-5590
-
Phylogeny and biogeography of the genus Stevia (Asteraceae: Eupatorieae): an example of diversification in the Asteraceae in the new world
Peer-reviewed
Akiko Soejima, Akifumi S. Tanabe, Izumi Takayama, Takayuki Kawahara, Kuniaki Watanabe, Miyuki Nakazawa, Misako Mishima, Tetsukazu Yahara
JOURNAL OF PLANT RESEARCH 130 (6) 953-972 2017/11
DOI：
10.1007/s10265-017-0955-z
ISSN：
0918-9440
eISSN：
1618-0860
-
Eukaryotic diversity in late Pleistocene marine sediments around a shallow methane hydrate deposit in the Japan Sea
Peer-reviewed
M. Kouduka, A. S. Tanabe, S. Yamamoto, K. Yanagawa, Y. Nakamura, F. Akiba, H. Tomaru, H. Toju, Y. Suzuki
GEOBIOLOGY 15 (5) 715-727 2017/09
DOI：
10.1111/gbi.12233
ISSN：
1472-4677
eISSN：
1472-4669
-
Host shifts enhance diversification of ectomycorrhizal fungi: diversification rate analysis of the ectomycorrhizal fungal genera Strobilomyces and Afroboletus with an 80-gene phylogeny
Peer-reviewed
Hirotoshi Sato, Akifumi S. Tanabe, Hirokazu Toju
NEW PHYTOLOGIST 214 (1) 443-454 2017/04
DOI：
10.1111/nph.14368
ISSN：
0028-646X
eISSN：
1469-8137
-
Erratum to: A new resource of single nucleotide polymorphisms in the Japanese eel Anguilla japonica derived from restriction site-associated DNA (Ichthyol Res, 10.1007/s10228-016-0518-7)
Peer-reviewed
Masashi Sekino, Reiichiro Nakamichi, Yuki Iwasaki, Akifumi S. Tanabe, Atushi Fujiwara, Motoshige Yasuike, Manabu Shiraishi, Kenji Saitoh
Ichthyological Research 63 (4) 505 2016/11/01
Publisher:
Springer-Verlag Tokyo
DOI：
10.1007/s10228-016-0542-7
ISSN：
1341-8998
-
A new resource of single nucleotide polymorphisms in the Japanese eel Anguilla japonica derived from restriction site-associated DNA
Peer-reviewed
Masashi Sekino, Reiichiro Nakamichi, Yuki Iwasaki, Akifumi S. Tanabe, Atushi Fujiwara, Motoshige Yasuike, Manabu Shiraishi, Kenji Saitoh
ICHTHYOLOGICAL RESEARCH 63 (4) 496-504 2016/11
DOI：
10.1007/s10228-016-0518-7
ISSN：
1341-8998
eISSN：
1616-3915
-
Ericaceous plant-fungus network in a harsh alpine-subalpine environment
Peer-reviewed
Hirokazu Toju, A. S. Tanabe, H. S. Ishii
Molecular Ecology 25 (13) 3242-3257 2016/07/01
Publisher:
Blackwell Publishing Ltd
DOI：
10.1111/mec.13680
ISSN：
1365-294X 0962-1083
-
Structure of phyllosphere fungal communities in a tropical dipterocarp plantation: A massively parallel next-generation sequencing analysis
Peer-reviewed
Ayako Izuno, Akifumi S. Tanabe, Hirokazu Toju, Michimasa Yamasaki, Sapto Indrioko, Yuji Isagi
MYCOSCIENCE 57 (3) 171-180 2016/05
DOI：
10.1016/j.myc.2015.12.005
ISSN：
1340-3540
eISSN：
1618-2545
-
Deep microbial life in high-quality granitic groundwater from geochemically and geographically distinct underground boreholes
Peer-reviewed
Kohei Ino, Uta Konno, Mariko Kouduka, Akinari Hirota, Yoko S. Togo, Akari Fukuda, Daisuke Komatsu, Urumu Tsunogai, Akihumi S. Tanabe, Satoshi Yamamoto, Teruki Iwatsuki, Takashi Mizuno, Kazumasa Ito, Yohey Suzuki
ENVIRONMENTAL MICROBIOLOGY REPORTS 8 (2) 285-294 2016/04
DOI：
10.1111/1758-2229.12379
ISSN：
1758-2229
-
Two New Computational Methods for Universal DNA Barcoding: A Benchmark Using Barcode Sequences of Bacteria, Archaea, Animals, Fungi, and Land Plants (vol 8, e76910, 2013)
Peer-reviewed
Akifumi S. Tanabe, Hirokazu Toju
PLOS ONE 11 (3) e0152242 2016/03
DOI：
10.1371/journal.pone.0152242
ISSN：
1932-6203
-
Network modules and hubs in plant-root fungal biomes
Peer-reviewed
Hirokazu Toju, Satoshi Yamamoto, Akifumi S. Tanabe, Takashi Hayakawa, Hiroshi S. Ishii
JOURNAL OF THE ROYAL SOCIETY INTERFACE 13 (116) 2016/03
DOI：
10.1098/rsif.2015.1097
ISSN：
1742-5689
eISSN：
1742-5662
-
Comparative study of the validity of three regions of the 18S-rRNA gene for massively parallel sequencing-based monitoring of the planktonic eukaryote community
Peer-reviewed
Akifumi S. Tanabe, Satoshi Nagai, Kohsuke Hida, Motoshige Yasuike, Atushi Fujiwara, Yoji Nakamura, Yoshihito Takano, Seiji Katakura
MOLECULAR ECOLOGY RESOURCES 16 (2) 402-414 2016/03
DOI：
10.1111/1755-0998.12459
ISSN：
1755-098X
eISSN：
1755-0998
-
Contrasting Diversity and Host Association of Ectomycorrhizal Basidiomycetes versus Root-Associated Ascomycetes in a Dipterocarp Rainforest
Peer-reviewed
Hirotoshi Sato, Akifumi S. Tanabe, Hirokazu Toju
PLOS ONE 10 (4) e0125550 2015/04
DOI：
10.1371/journal.pone.0125550
ISSN：
1932-6203
-
Diet disparity among sympatric herbivorous cichlids in the same ecomorphs in Lake Tanganyika: amplicon pyrosequences on algal farms and stomach contents
Peer-reviewed
Hiroki Hata, Akifumi S. Tanabe, Satoshi Yamamoto, Hirokazu Toju, Masanori Kohda, Michio Hori
BMC BIOLOGY 12 (1) 90 2014/11
DOI：
10.1186/s12915-014-0090-4
ISSN：
1741-7007
-
Spatial Segregation and Aggregation of Ectomycorrhizal and Root-Endophytic Fungi in the Seedlings of Two Quercus Species
Peer-reviewed
Satoshi Yamamoto, Hirotoshi Sato, Akifumi S. Tanabe, Amane Hidaka, Kohmei Kadowaki, Hirokazu Toju
PLOS ONE 9 (5) e96363 2014/05
DOI：
10.1371/journal.pone.0096363
ISSN：
1932-6203
-
Detection of the horizontal spatial structure of soil fungal communities in a natural forest
Peer-reviewed
Kohmei Kadowaki, Hirotoshi Sato, Satoshi Yamamoto, Akifumi S. Tanabe, Amane Hidaka, Hirokazu Toju
POPULATION ECOLOGY 56 (2) 301-310 2014/04
DOI：
10.1007/s10144-013-0424-z
ISSN：
1438-3896
eISSN：
1438-390X
-
Palpitomonas bilix represents a basal cryptist lineage: insight into the character evolution in Cryptista
Peer-reviewed
Akinori Yabuki, Ryoma Kamikawa, Sohta A. Ishikawa, Martin Kolisko, Eunsoo Kim, Akifumi S. Tanabe, Keitaro Kume, Ken-ichiro Ishida, Yuji Inagki
SCIENTIFIC REPORTS 4 4641 2014/04
DOI：
10.1038/srep04641
ISSN：
2045-2322
-
Diet disparity among sympatric herbivorous cichlids in the same ecomorphs in Lake Tanganyika: Amplicon pyrosequences on algal farms and stomach contents
Peer-reviewed
Hiroki Hata, Akifumi S. Tanabe, Satoshi Yamamoto, Hirokazu Toju, Masanori Kohda, Michio Hori
BMC Medicine 12 (1) 2014
Publisher:
BioMed Central Ltd.
DOI：
10.1186/s12915-014-0090-4
ISSN：
1741-7015
-
Diversity and Spatial Structure of Belowground Plant-Fungal Symbiosis in a Mixed Subtropical Forest of Ectomycorrhizal and Arbuscular Mycorrhizal Plants
Peer-reviewed
Hirokazu Toju, Hirotoshi Sato, Akifumi S. Tanabe
PLOS ONE 9 (1) e86566 2014/01
DOI：
10.1371/journal.pone.0086566
ISSN：
1932-6203
-
Two New Computational Methods for Universal DNA Barcoding: A Benchmark Using Barcode Sequences of Bacteria, Archaea, Animals, Fungi, and Land Plants
Peer-reviewed
Akifumi S. Tanabe, Hirokazu Toju
PLOS ONE 8 (10) e76910 2013/10
DOI：
10.1371/journal.pone.0076910
ISSN：
1932-6203
-
Sharing of Diverse Mycorrhizal and Root-Endophytic Fungi among Plant Species in an Oak-Dominated Cool-Temperate Forest
Peer-reviewed
Hirokazu Toju, Satoshi Yamamoto, Hirotoshi Sato, Akifumi S. Tanabe
PLOS ONE 8 (10) e78248 2013/10
DOI：
10.1371/journal.pone.0078248
ISSN：
1932-6203
-
How are plant and fungal communities linked to each other in belowground ecosystems? A massively parallel pyrosequencing analysis of the association specificity of root-associated fungi and their host plants
Peer-reviewed
Hirokazu Toju, Hirotoshi Sato, Satoshi Yamamoto, Kohmei Kadowaki, Akifumi S. Tanabe, Shigenobu Yazawa, Osamu Nishimura, Kiyokazu Agata
ECOLOGY AND EVOLUTION 3 (9) 3112-3124 2013/09
DOI：
10.1002/ece3.706
ISSN：
2045-7758
-
Diversification of endosymbiosis: replacements, co-speciation and promiscuity of bacteriocyte symbionts in weevils
Peer-reviewed
Hirokazu Toju, Akifumi S. Tanabe, Yutaka Notsu, Teiji Sota, Takema Fukatsu
ISME JOURNAL 7 (7) 1378-1390 2013/07
DOI：
10.1038/ismej.2013.27
ISSN：
1751-7362
-
Community composition of root-associated fungi in a Quercus-dominated temperate forest: "codominance" of mycorrhizal and root-endophytic fungi
Peer-reviewed
Hirokazu Toju, Satoshi Yamamoto, Hirotoshi Sato, Akifumi S. Tanabe, Gregory S. Gilbert, Kohmei Kadowaki
ECOLOGY AND EVOLUTION 3 (5) 1281-1293 2013/05
DOI：
10.1002/ece3.546
ISSN：
2045-7758
-
High-Coverage ITS Primers for the DNA-Based Identification of Ascomycetes and Basidiomycetes in Environmental Samples
Peer-reviewed
Hirokazu Toju, Akifumi S. Tanabe, Satoshi Yamamoto, Hirotoshi Sato
PLOS ONE 7 (7) e40863 2012/07
DOI：
10.1371/journal.pone.0040863
ISSN：
1932-6203
-
An asynchronous parallel genetic algorithm for the maximum likelihood phylogenetic tree search
Peer-reviewed
Miwako Tsuji, Mitsuhisa Sato, Akifumi S. Tanabe, Yuji Inagaki, Tetsuo Hashimoto
2012 IEEE Congress on Evolutionary Computation, CEC 2012 2012
DOI：
10.1109/CEC.2012.6256560
-
Entangling Ancient Allotetraploidization in Asian Mitella: An Integrated Approach for Multilocus Combinations
Peer-reviewed
Yudai Okuyama, Akifumi S. Tanabe, Makoto Kato
MOLECULAR BIOLOGY AND EVOLUTION 29 (1) 429-439 2012/01
DOI：
10.1093/molbev/msr236
ISSN：
0737-4038
-
Kakusan4 and Aminosan: two programs for comparing nonpartitioned, proportional and separate models for combined molecular phylogenetic analyses of multilocus sequence data
Peer-reviewed
Akifumi S. Tanabe
MOLECULAR ECOLOGY RESOURCES 11 (5) 914-921 2011/09
DOI：
10.1111/j.1755-0998.2011.03021.x
ISSN：
1755-098X
-
Extreme population genetic differentiation and secondary contact in the freshwater copepod Acanthodiaptomus pacificus in the Japanese Archipelago
Peer-reviewed
Wataru Makino, Akifumi S. Tanabe
MOLECULAR ECOLOGY 18 (17) 3699-3713 2009/09
DOI：
10.1111/j.1365-294X.2009.04307.x
ISSN：
0962-1083
eISSN：
1365-294X
-
Kakusan: A computer program to automate the selection of a nucleotide substitution model and the configuration of a mixed model on multilocus data
Peer-reviewed
Akifumi S. Tanabe
Molecular Ecology Notes 7 (6) 962-964 2007/11
DOI：
10.1111/j.1471-8286.2007.01807.x
ISSN：
1471-8278 1471-8286
