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Shusei Sato

Section

Graduate School of Life Sciences

Job title

Professor

Degree

博士（理学）（名古屋大学）
理学修士（名古屋大学）

researchmap

https://researchmap.jp/Shuseis_tohoku

J-GLOBAL ID

201401099137344445

ORCID

https://orcid.org/0000-0002-0293-5366

Researcher ID

A-3616-2015

Research History 3

2020/06 - Present

Tohoku University　Graduate School of Life Sciences　Professor
2013/04 - 2020/06

Tohoku University
1993/04 - 2013/03

Kazusa DNA Research Institute　Researcher

Professional Memberships 4

Japanese Society of Plant Microbe Interactins
Society of Genome Microbiology, Japan
THE JAPANESE SOCIETY OF PLANT PHYSIOLOGISTS
THE MOLECULAR BIOLOGY SOCIETY OF JAPAN

Research Interests 30

ゲノム
ダイズ
ミヤコグサ
シンテニー
連鎖地図
比較地図
植物
共生
コンティグ
微生物
窒素固定
連鎖群
遺伝子
遺伝子座
エンドファイト
BACクローン
遺伝子発現
ゲノムアイランド
形質転換
変異体
遺伝子単離
ゲノム解析
QTL解析
シンテニーブロック
根粒菌
ホモロジー検索
マイクロシンテニー
遺伝子予測
同祖遺伝子
遺伝子重複

Research Areas 4

Life sciences / Plants: molecular biology and physiology /
Environmental science/Agricultural science / Horticulture /
Life sciences / Genomics /
Environmental science/Agricultural science / Plant genetics and breeding /

Awards 1

Highly Cited Researchers

2018/11　Clarivate Analytics

Papers 440

Expanding plant trait databases using large language model: A case study on flower color extraction

Masaru Bamba, Shusei Sato

2025/02/14

DOI： 10.1101/2025.02.11.637746 　
Genome-wide association study identifies candidate genes contributing to flowering time variation in Lotus japonicus in Japan

Tomomi Wakabayashi, Stig U. Andersen, Sachiko Tanaka, Shusei Sato, Masayoshi Kawaguchi, Ko Kato, Hiroaki Setoguchi

Plant Biotechnology　2024/12/24
Publisher: Japanese Society for Plant Cell and Molecular Biology
DOI： 10.5511/plantbiotechnology.24.1023a 　

ISSN： 1342-4580

eISSN： 1347-6114
Rhizobium rhizogenes -mediated Hairy-root Transformation of Daughter Plants from the Model Strawberry Fragaria vesca’s Stolons Authors

Shigeru Hanano, Koichiro Otake, Shusei Sato

Plant Biotechnology　2024/11/22
Publisher: Japanese Society for Plant Cell and Molecular Biology
DOI： 10.5511/plantbiotechnology.24.0925a 　

ISSN： 1342-4580

eISSN： 1347-6114
A mitochondrial metalloprotease FtsH4 is required for symbiotic nitrogen fixation in Lotus japonicus nodules. International-journal

Yoshikazu Shimoda, Hiroko Yamaya-Ito, Tsuneo Hakoyama, Shusei Sato, Takakazu Kaneko, Satoshi Shibata, Masayoshi Kawaguchi, Norio Suganuma, Makoto Hayashi, Hiroshi Kouchi, Yosuke Umehara

Scientific reports　14　(1)　27578-27578　2024/11/11

DOI： 10.1038/s41598-024-78295-5 　

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Symbiotic nitrogen fixation is a highly coordinated process involving legume plants and nitrogen-fixing bacteria known as rhizobia. In this study, we investigated a novel Fix- mutant of the model legume Lotus japonicus that develops root nodules with endosymbiotic rhizobia but fails in nitrogen fixation. Map-based cloning identified the causal gene encoding the filamentation temperature-sensitive H (FtsH) protein, designated as LjFtsH4. The LjFtsH4 gene was expressed in all plant organs without increased levels during nodulation. Subcellular localization revealed that LjFtsH4, fused with a fluorescent protein, localized in mitochondria. The Ljftsh4 mutant nodules showed signs of premature senescence, including symbiosome membrane collapse and bacteroid disintegration. Additionally, nodule cells of Ljftsh4 mutant displayed mitochondria with indistinct crista structures. Grafting and complementation tests confirmed that the Fix- phenotype was determined by the root genotype, and that protease activity of LjFtsH4 was essential for nodule nitrogen fixation. Furthermore, the ATP content in Ljftsh4 mutant roots and nodules was lower than in the wild-type, suggesting reduced mitochondrial function. These findings underscore the critical role of LjFtsH4 in effective symbiotic nitrogen fixation in root nodules.
Mechanisms of Cannabis Growth Promotion by Bacillus velezensis S141

Phirom Aunkam, Surachat Sibponkrung, Sirawich Limkul, Tuangrak Seabkongseng, Kanjana Mahanil, Kamolchanok Umnajkitikorn, Nantakorn Boonkerd, Neung Teaumroong, Shusei Sato, Panlada Tittabutr, Pakpoom Boonchuen

Plants　2024/10/24

DOI： 10.3390/plants13212971 　
Microbiome interactions increase plant haplotype richness

Stig Andersen, Johan Quilbé, Troels Mouritzen, Turgut Akyol, Yusdar Mustamin, Masaru Bamba, Mikkel Schierup, Shusei Sato

2024/10/08
Publisher: Springer Science and Business Media LLC
DOI： 10.21203/rs.3.rs-5130034/v1 　

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Abstract The genetic makeup of natural plant populations often allows them to persist for many years without succumbing to disease. Transferring such properties to crops could increase resilience and reduce reliance on chemical pesticides. However, the population genomics of plant-microbiome interactions remain poorly understood. Here, we use Lotus japonicus, which has persisted as a natural population in Japan for ~20’000 years, to identify genomic selection signatures caused by soil microbes. We found strong genetic associations with root microbiome structure within a gene we name ROOT MICROBIOME ESTABLISHMENT 1 (ROOMIE1) located in a region with high haplotype richness. This led us to quantify haplotype richness genome-wide using a new metric, HAPk. We found haplotype-rich regions strongly enriched for microbiome genetic associations, suggesting that soil microbes were imposing negative frequency-dependent selection. We validated this hypothesis by showing increased migration rates of microbiome associated alleles and by determining that ROOMIE1 shows standing variation in local populations and impacts rhizosphere colonization in native Japanese soil. Our results indicate that interactions with soil microbes represent a major selective force in plant genome evolution and suggest that haplotype-rich regions constitute a genetic resource for improvement of crop resilience.
Frame-shift mutation ofInCOmight cause early flowering of Japanese morning glory and might have contributed to northward expansion

Hiroaki Katsuyama, Takuro Ito, Kyousuke Ezura, Emdadul Haque, Atsushi Hoshino, Eiji Nitasaka, Michiyuki Ono, Shusei Sato, Sachiko Isobe, Hiroyuki Fukuoka, Nobuyoshi Watanabe, Tsutomu Kuboyama

2024/09/08
Publisher: Cold Spring Harbor Laboratory
DOI： 10.1101/2024.09.05.611556 　

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Abstract Japanese morning glory (Ipomoea nil), a short day plant, has been used for studying flowering times. Here, quantitative trait loci (QTL) analysis for days from sowing to flowering (DTF) of F₂betweenI. nilvar. Tokyo Kokei Standard (TKS) andI. hederacealine var. Q65, an early flowering variety, revealed four QTLs:QTL Ipomoea Flowering 1–4(qIF1–4). The position ofqIF3, which had the most significant effect among the four QTLs, corresponds with that ofI. nil(orI. hederacea)CONSTANS(InCO/IhCO) in the linkage map. There is a single-base In/Del in the coding sequence ofInCO/IhCO. The single-base deletion (SBD) causes a frame-shift mutation and loss of function in TKS allele (inco-1).I. nilaccessions bearinginco-1tend to flower early, similarly to rice varieties bearing the loss of function allele ofCOortholog,hd1. Consequently,inco-1was inferred to reduce DTF. This inferred effect ofinco-1corresponds with the effect of the TKS allele ofqIF3. Becauseinco-1is found exclusively in Asian accessions, the SBD ininco-1might have played an important role in the expansion of Japanese morning glories, originally native to the tropical regions of the Americas, into temperate Asia.
Estimation of candidate genes for chemical components involved in dark green coloration of bunching onion by QTL analysis International-journal

T. Nakajima, R. Nakata, Y. Shimomi, T. Mukae, K. Fuji, K. Watanabe, Y. Mizukami, M. Bamba, S. Sato, M. Shigyo

Acta Horticulturae　(1404)　583-586　2024/09
Publisher: International Society for Horticultural Science (ISHS)
DOI： 10.17660/actahortic.2024.1404.78 　

ISSN： 0567-7572

eISSN： 2406-6168
Enhancing Resistance to Cercospora Leaf Spot in Mung Bean (Vigna radiata L.) through Bradyrhizobium sp. DOA9 Priming: Molecular Insights and Bio-Priming Potential

Apisit songsaeng, Pakpoom Boonchuen, Phongkeat Nareephot, Pongdet Piromyou, Jenjira Wongdee, Teerana Greetatorn, Sukanya Inthaisong, Piyada Tantasawat, Kamonluck Teamtisong, Panlada Tittabutr, Shusei Sato, Nantakorn Boonkerd, Pongpan Songwattana, Neung Teaumroong

Plants　2024/09

DOI： 10.3390/plants13172495 　
Synergistic effects of plant genotype and soil microbiome on growth in Lotus japonicus Peer-reviewed

Masaru Bamba, Turgut Yigit Akyol, Yusuke Azuma, Johan Quilbe, Stig Uggerhøj Andersen, Shusei Sato

FEMS Microbiology Ecology　Volume 100　(Issue 5)　fiae056　2024/04/10

DOI： 10.1093/femsec/fiae056 　
Does Rhizobial Inoculation Change the Microbial Community in Field Soils? A‍ ‍Comparison with Agricultural Land-use Changes

Shintaro Hara, Kaori Kakizaki, Masaru Bamba, Manabu Itakura, Masayuki Sugawara, Atsuo Suzuki, Yuma Sasaki, Masanori Takeda, Kanako Tago, Tsubasa Ohbayashi, Toshihiro Aono, Luciano Nobuhiro Aoyagi, Hiroaki Shimada, Ryo Shingubara, Sachiko Masuda, Arisa Shibata, Ken Shirasu, Rota Wagai, Hiroko Akiyama, Shusei Sato, Kiwamu Minamisawa

Microbes and Environments　39　(3)　n/a-n/a　2024
Publisher: Japanese Society of Microbial Ecology
DOI： 10.1264/jsme2.me24006 　

ISSN： 1342-6311

eISSN： 1347-4405
Bradyrhizobium ottawaense efficiently reduces nitrous oxide through high nosZ gene expression

Sawa Wasai-Hara, Manabu Itakura, Arthur Fernandes Siqueira, Daisaku Takemoto, Masayuki Sugawara, Hisayuki Mitsui, Shusei Sato, Noritoshi Inagaki, Toshimasa Yamazaki, Haruko Imaizumi-Anraku, Yoshikazu Shimoda, Kiwamu Minamisawa

Scientific Reports　13　(1)　2023/11/01
Publisher: Springer Science and Business Media LLC
DOI： 10.1038/s41598-023-46019-w 　

eISSN： 2045-2322

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Abstract N₂O is an important greenhouse gas influencing global warming, and agricultural land is the predominant (anthropogenic) source of N₂O emissions. Here, we report the high N₂O-reducing activity of Bradyrhizobium ottawaense, suggesting the potential for efficiently mitigating N₂O emission from agricultural lands. Among the 15 B. ottawaense isolates examined, the N₂O-reducing activities of most (13) strains were approximately five-fold higher than that of Bradyrhizobium diazoefficiens USDA110^T under anaerobic conditions. This robust N₂O-reducing activity of B. ottawaense was confirmed by N₂O reductase (NosZ) protein levels and by mitigation of N₂O emitted by nodule decomposition in laboratory system. While the NosZ of B. ottawaense and B. diazoefficiens showed high homology, nosZ gene expression in B. ottawaense was over 150-fold higher than that in B. diazoefficiens USDA110^T, suggesting the high N₂O-reducing activity of B. ottawaense is achieved by high nos expression. Furthermore, we examined the nos operon transcription start sites and found that, unlike B. diazoefficiens, B. ottawaense has two transcription start sites under N₂O-respiring conditions, which may contribute to the high nosZ expression. Our study indicates the potential of B. ottawaense for effective N₂O reduction and unique regulation of nos gene expression towards the high performance of N₂O mitigation in the soil.
Self-grafting induced epigenetic changes leading to drought stress tolerance in tomato plants

Maria Isabel Fuentes-Merlos, Masaru Bamba, Shusei Sato, Atsushi Higashitani

DNA Research　2023/07/15
Publisher: Oxford University Press (OUP)
DOI： 10.1093/dnares/dsad016 　

ISSN： 1340-2838

eISSN： 1756-1663

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Abstract Grafting is widely used as a method to increase stress tolerance in good fruiting lines of Solanaceae plants. However, little is known about how grafting, affects epigenetic modifications and leads to stress tolerance, especially within the same line. Here, we studied the effects of self-grafting in tomato plants on histone and DNA modifications and changes in gene expression related to drought stress. We found that at the 3-leaf stage, one week after self-grafting, histone H3 K4 trimethylation and K27 trimethylation changes were observed in more than 500 genes each, and DNA methylation changes in more than 5,000 gene regions at the shoot apex compared to the non-grafted control. In addition, two weeks after the epigenomic changes, global expression changes continued to be observed at the shoot apex in several genes related to the metabolic process of nitrogen compounds, responses to stimulus, chromosome organization, cell cycle-related genes, and regulation of hormone levels. Finally, these grafted seedlings acquired remarkable drought tolerance, suggesting that epigenomic modifications during the wound-healing process mitigate stress tolerance in tomato plants.
The future of genetic resources and breeding science brightened by genomics and new technologies

Sato Yutaka, Kusaba Makoto, Naito Ken, Isobe Sachiko, Ariizumi Tohru, Sato Shusei, Sato Kazuhiro, Niikura Satoshi, Akagi Takashi

Breeding Research　25　(1)　33-40　2023/06/01
Publisher: Japanese Society of Breeding
DOI： 10.1270/jsbbr.25.s01 　

ISSN： 1344-7629

eISSN： 1348-1290
FER and LecRK show haplotype-dependent cold-responsiveness and mediate freezing tolerance in Lotus japonicus

Yusdar Mustamin, Turgut Yigit Akyol, Max Gordon, Andi Madihah Manggabarani, Yoshiko Isomura, Yasuko Kawamura, Masaru Bamba, Cranos Williams, Stig Uggerhøj Andersen, Shusei Sato

Plant Physiology　2022/11/30
Publisher: Oxford University Press (OUP)
DOI： 10.1093/plphys/kiac533 　

ISSN： 0032-0889

eISSN： 1532-2548

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ABSTRACT Many plant species have succeeded in colonizing a wide range of diverse climates through local adaptation, but the underlying molecular genetics remain obscure. We previously found that winter survival was a direct target of selection during colonization of Japan by the perennial legume Lotus japonicus and identified associated candidate genes. Here, we show that two of these, FERONIA-receptor like kinase (LjFER) and a S-receptor-like kinase gene (LjLecRK) are required for non-acclimated freezing tolerance and show haplotype-dependent cold-responsive expression. Our work suggests that recruiting a conserved growth regulator gene, FER, and a receptor-like kinase gene, LecRK, into the set of cold-responsive genes has contributed to freezing tolerance and local climate adaptation in L. japonicus, offering functional genetic insight into perennial herb evolution.
Development of a genome-wide marker design workflow for onions and its application in target amplicon sequencing-based genotyping

Daisuke Sekine, Satoshi Oku, Tsukasa Nunome, Hideki Hirakawa, Mai Tsujimura, Toru Terachi, Atsushi Toyoda, Masayoshi Shigyo, Shusei Sato, Hikaru Tsukazaki

DNA Research　29　(5)　2022/08/23
Publisher: Oxford University Press (OUP)
DOI： 10.1093/dnares/dsac020 　

eISSN： 1756-1663

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Abstract Onions are one of the most widely cultivated vegetables worldwide; however, the development and utilization of molecular markers have been limited because of the large genome of this plant. We present a genome-wide marker design workflow for onions and its application in a high-throughput genotyping method based on target amplicon sequencing. The efficiency of the method was evaluated by genotyping of F2 populations. In the marker design workflow, unigene and genomic sequence data sets were constructed, and polymorphisms between parental lines were detected through transcriptome sequence analysis. The positions of polymorphisms detected in the unigenes were mapped onto the genome sequence, and primer sets were designed. In total, 480 markers covering the whole genome were selected. By genotyping an F2 population, 329 polymorphic sites were obtained from the estimated positions or the flanking sequences. However, missing or sparse marker regions were observed in the resulting genetic linkage map. We modified the markers to cover these regions by genotyping the other F2 populations. The grouping and order of markers on the linkages were similar across the genetic maps. Our marker design workflow and target amplicon sequencing are useful for genome-wide genotyping of onions owing to their reliability, cost effectiveness, and flexibility.
Widespread and transgenerational retrotransposon activation in inter‐ and intraspecies recombinant inbred populations of Lotus japonicus

Eigo Fukai, Manabu Yoshikawa, Niraj Shah, Niels Sandal, Akio Miyao, Seijiro Ono, Hideki Hirakawa, Turgut Yigit Akyol, Yosuke Umehara, Ken‐Ichi Nonomura, Jens Stougaard, Hirohiko Hirochika, Makoto Hayashi, Shusei Sato, Stig Uggerhøj Andersen, Keiichi Okazaki

The Plant Journal　111　(5)　1397-1410　2022/07/30
Publisher: Wiley
DOI： 10.1111/tpj.15896 　

ISSN： 0960-7412

eISSN： 1365-313X
Comparative Transcriptome Analysis of Grafted Tomato with Drought Tolerance

Maria Isabel Fuentes-Merlos, Masaru Bamba, Shusei Sato, Atsushi Higashitani

Plants　11　(15)　1947-1947　2022/07/27
Publisher: MDPI AG
DOI： 10.3390/plants11151947 　

eISSN： 2223-7747

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Grafting is a method used in agriculture to improve crop production and tolerance to biotic and abiotic stress. This technique is widely used in tomato, Solanum lycopersicum L.; however, the effects of grafting on changes in gene expression associated with stress tolerance in shoot apical meristem cells are still under-discovered. To clarify the effect of grafting, we performed a transcriptomic analysis between non-grafted and grafted tomatoes using the tomato variety Momotaro-scion and rootstock varieties, TD1, GS, and GF. Drought tolerance was significantly improved not only by a combination of compatible resistant rootstock TD1 but also by self-grafted compared to non-grafted lines. Next, we found the differences in gene expression between grafted and non-grafted plants before and during drought stress treatment. These altered genes are involved in the regulation of plant hormones, stress response, and cell proliferation. Furthermore, when comparing compatible (Momo/TD1 and Momo/Momo) and incompatible (Momo/GF) grafted lines, the incompatible line reduced gene expression associated with phytohormones but increased in wounding and starvation stress-response genes. These results conclude that grafting generates drought stress tolerance through several gene expression changes in the apical meristem.
In Vivo Evidence of Single ¹³ C and ¹⁵ N Isotope–Labeled Methanotrophic Nitrogen-Fixing Bacterial Cells in Rice Roots

Shintaro Hara, Naohisa Wada, Sliver Sung-Yun Hsiao, Meng Zhang, Zhihua Bao, Yoshiyuki Iizuka, Der-Chuen Lee, Shusei Sato, Sen-Lin Tang, Kiwamu Minamisawa

mBio　13　(3)　2022/06/28
Publisher: American Society for Microbiology
DOI： 10.1128/mbio.01255-22 　

eISSN： 2150-7511

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Atmospheric methane concentrations have been continually increasing, causing methane to become a considerable environmental concern. Methanotrophy may be the key to regulating methane fluxes.
Construction of prediction models for growth traits of soybean cultivars based on phenotyping in diverse genotype and environment combinations

Andi Madihah Manggabarani, Takuyu Hashiguchi, Masatsugu Hashiguchi, Atsushi Hayashi, Masataka Kikuchi, Yusdar Mustamin, Masaru Bamba, Kunihiro Kodama, Takanari Tanabata, Sachiko Isobe, Hidenori Tanaka, Ryo Akashi, Akihiro Nakaya, Shusei Sato

DNA Research　29　(4)　2022/06/25
Publisher: Oxford University Press (OUP)
DOI： 10.1093/dnares/dsac024 　

ISSN： 1340-2838

eISSN： 1756-1663

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Abstract As soybean cultivars are adapted to a relatively narrow range of latitude, the effects of climate changes are estimated to be severe. To address this issue, it is important to improve our understanding of the effects of climate change by applying the simulation model including both genetic and environmental factors with their interactions (G×E). To achieve this goal, we conducted the field experiments for soybean core collections using multiple sowing times in multi-latitudinal fields. Sowing time shifts altered the flowering time (FT) and growth phenotypes, and resulted in increasing the combinations of genotypes and environments. Genome-wide association studies for the obtained phenotypes revealed the effects of field and sowing time to the significance of detected alleles, indicating the presence of G×E. By using accumulated phenotypic and environmental data in 2018 and 2019, we constructed multiple regression models for FT and growth pattern. Applicability of the constructed models was evaluated by the field experiments in 2020 including a novel field, and high correlation between the predicted and measured values was observed, suggesting the robustness of the models. The models presented here would allow us to predict the phenotype of the core collections in a given environment.
Receptor-like kinases FER and SRK mediate Lotus japonicus freezing tolerance and climate adaptation

Yusdar Mustamin, Turgut Yigit Akyol, Max Gordon, Andi Madihah Manggabarani, Yoshiko Isomura, Yasuko Kawamura, Masaru Bamba, Cranos Williams, Stig Uggerhøj Andersen, Shusei Sato

2022/04/28

DOI： 10.1101/2022.04.27.489728 　
Genotype by microbiome interactions have large effects on growth in Lotus japonicus

Masaru Bamba, Turgut Yigit Akyol, Yusuke Azuma, Johan Quilbe, Stig Uggerhøj Andersen, Shusei Sato

2022/03/29
Publisher: Cold Spring Harbor Laboratory
DOI： 10.1101/2022.03.28.486086 　

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Abstract Biological interactions between plants and their root microbiomes are pivotal for plant growth. Even though the plant genotype [G], soil microbiome [C], and growth conditions (environment) [E] are core factors shaping the root microbiome, their relationships remain unclear. We disentangled the effects of G, C, E, and their interactions on the Lotus root microbiome and plant growth using a cross-inoculation approach that reconstructed the interactions between nine Lotus accessions and four soil microbiomes under two different environmental conditions. We found that a large proportion of the root microbiome composition was determined by C and E and that G-related (G, G × C, and G × E) effects were significant but small. In contrast, the interactions between G and C had a more pronounced effect on plant shoot growth than C alone. Our findings indicate that most microbiome variations controlled by C have little effect on the plant phenotype, whereas G × C interactions have more significant effects. Plant genotype-dependent interactions with soil microbes warrant more attention in efforts to optimize crop yield and resilience.
Phenolic Acids Induce Nod Factor Production in Lotus japonicus–Mesorhizobium Symbiosis

Masayuki Shimamura, Takashi Kumaki, Shun Hashimoto, Kazuhiko Saeki, Shin-ichi Ayabe, Atsushi Higashitani, Tomoyoshi Akashi, Shusei Sato, Toshio Aoki

Microbes and Environments　37　(1)　ME21094　2022
Publisher: Japanese Society of Microbial Ecology
DOI： 10.1264/jsme2.me21094 　

ISSN： 1342-6311

eISSN： 1347-4405
Evolution of rhizobial symbiosis islands through insertion sequence-mediated deletion and duplication

Haruka Arashida, Haruka Odake, Masayuki Sugawara, Ryota Noda, Kaori Kakizaki, Satoshi Ohkubo, Hisayuki Mitsui, Shusei Sato, Kiwamu Minamisawa

The ISME Journal　16　(1)　112-121　2022/01
Publisher: Springer Science and Business Media LLC
DOI： 10.1038/s41396-021-01035-4 　

ISSN： 1751-7362

eISSN： 1751-7370

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<title>Abstract</title>Symbiosis between organisms influences their evolution via adaptive changes in genome architectures. Immunity of soybean carrying the <italic>Rj2</italic> allele is triggered by NopP (type III secretion system [T3SS]-dependent effector), encoded by symbiosis island A (SymA) in <italic>B. diazoefficiens</italic> USDA122. This immunity was overcome by many mutants with large SymA deletions that encompassed T3SS (<italic>rhc</italic>) and N₂ fixation (<italic>nif</italic>) genes and were bounded by insertion sequence (IS) copies in direct orientation, indicating homologous recombination between ISs. Similar deletion events were observed in <italic>B. diazoefficiens</italic> USDA110 and <italic>B. japonicum</italic> J5. When we cultured a USDA122 strain with a marker gene <italic>sacB</italic> inserted into the <italic>rhc</italic> gene cluster, most sucrose-resistant mutants had deletions in <italic>nif</italic>/<italic>rhc</italic> gene clusters, similar to the mutants above. Some deletion mutants were unique to the <italic>sacB</italic> system and showed lower competitive nodulation capability, indicating that IS-mediated deletions occurred during free-living growth and the host plants selected the mutants. Among 63 natural bradyrhizobial isolates, 2 possessed long duplications (261–357 kb) harboring <italic>nif</italic>/<italic>rhc</italic> gene clusters between IS copies in direct orientation via homologous recombination. Therefore, the structures of symbiosis islands are in a state of flux via IS-mediated duplications and deletions during rhizobial saprophytic growth, and host plants select mutualistic variants from the resultant pools of rhizobial populations. Our results demonstrate that homologous recombination between direct IS copies provides a natural mechanism generating deletions and duplications on symbiosis islands.
Tracking an Introduced Arbuscular Mycorrhizal Fungus in Allium fistulosum in a Field Condition With or Without Controlling Indigenous Fungi by Soil Fumigation As Well as Evaluation on Plant Phosphorus and Growth

Takumi Sato, Rieko Niwa, Tatsuhiro Ezawa, Shusei Sato, Hideki Hirakawa, Shigenobu Yoshida, Weiguo Cheng, Keitaro Tawaraya

JOURNAL OF SOIL SCIENCE AND PLANT NUTRITION　21　(4)　2781-2790　2021/12

DOI： 10.1007/s42729-021-00565-2 　

ISSN： 0718-9508

eISSN： 0718-9516
Construction of a high-density linkage map and graphical representation of the arrangement of transcriptome-based unigene markers on the chromosomes of onion, Allium cepa L.

Satoshi Fujito, Turgut Yigit Akyol, Takuya Mukae, Tadayuki Wako, Ken-ichiro Yamashita, Hikaru Tsukazaki, Hideki Hirakawa, Keisuke Tanaka, Yoko Mine, Shusei Sato, Masayoshi Shigyo

BMC Genomics　22　(1)　2021/12
Publisher: Springer Science and Business Media LLC
DOI： 10.1186/s12864-021-07803-y 　

eISSN： 1471-2164

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<title>Abstract</title><sec> <title>Background</title> Genomic information for <italic>Allium cepa</italic> L. is limited as it is heterozygous and its genome is very large. To elucidate potential SNP markers obtained by NGS, we used a complete set of <italic>A. fistulosum</italic> L.-<italic>A. cepa</italic> monosomic addition lines (MALs) and doubled haploids (DHs). These were the parental lines of an <italic>A. cepa</italic> mapping population for transcriptome-based SNP genotyping. </sec><sec> <title>Results</title> We mapped the transcriptome sequence reads from a series of <italic>A. fistulosum</italic>-<italic>A. cepa</italic> MALs onto the unigene sequence of the doubled haploid shallot <italic>A. cepa</italic> Aggregatum group (DHA) and compared the MAL genotype call for parental bunching onion and shallot transcriptome mapping data. We identified SNP sites with at least four reads on 25,462 unigenes. They were anchored on eight <italic>A. cepa</italic> chromosomes. A single SNP site was identified on 3,278 unigenes and multiple SNPs were identified on 22,184 unigenes. The chromosome marker information was made public via the web database Allium TDB (<ext-link xmlns:xlink="http://www.w3.org/1999/xlink" ext-link-type="uri" xlink:href="http://alliumtdb.kazusa.or.jp/">http://alliumtdb.kazusa.or.jp/</ext-link>). To apply transcriptome based genotyping approach for genetic mapping, we gathered RNA sequence data from 96 lines of a DHA × doubled haploid bulb onion <italic>A. cepa</italic> common onion group (DHC) mapping population. After selecting co-dominant SNP sites, 16,872 SNPs were identified in 5,339 unigenes. Of these, at least two SNPs with identical genotypes were found in 1,435 unigenes. We developed a linkage map using genotype information from these unigenes. All unigene markers mapped onto the eight chromosomes and graphical genotyping was conducted based on the unigene order information. Another 2,963 unigenes were allocated onto the eight chromosomes. To confirm the accuracy of this transcriptome-based genetic linkage map, conventional PCR-based markers were used for linkage analysis. All SNP - and PCR-based markers were mapped onto the expected linkage groups and no inconsistency was found among these chromosomal locations. </sec><sec> <title>Conclusions</title> Effective transcriptome analysis with unique <italic>Allium</italic> resources successfully associated numerous chromosome markers with unigene information and a high-density <italic>A. cepa</italic> linkage map. The information on these unigene markers is valuable in genome sequencing and useful trait detection in <italic>Allium</italic>. </sec>
Insights from the first genome assembly of Onion (Allium cepa)

Richard Finkers, Martijn van Kaauwen, Kai Ament, Karin Burger-Meijer, Raymond Egging, Henk Huits, Linda Kodde, Laurens Kroon, Masayoshi Shigyo, Shusei Sato, Ben Vosman, Wilbert van Workum, Olga Scholten

G3 Genes|Genomes|Genetics　11　(9)　2021/09/06
Publisher: Oxford University Press ({OUP})
DOI： 10.1093/g3journal/jkab243 　

eISSN： 2160-1836

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<title>Abstract</title> Onion is an important vegetable crop with an estimated genome size of 16 Gb. We describe the de novo assembly and ab initio annotation of the genome of a doubled haploid onion line DHCU066619, which resulted in a final assembly of 14.9 Gb with an N50 of 464 Kb. Of this, 2.4 Gb was ordered into eight pseudomolecules using four genetic linkage maps. The remainder of the genome is available in 89.6 K scaffolds. Only 72.4% of the genome could be identified as repetitive sequences and consist, to a large extent, of (retro) transposons. In addition, an estimated 20% of the putative (retro) transposons had accumulated a large number of mutations, hampering their identification, but facilitating their assembly. These elements are probably already quite old. The ab initio gene prediction indicated 540,925 putative gene models, which is far more than expected, possibly due to the presence of pseudogenes. Of these models, 47,066 showed RNASeq support. No gene rich regions were found, genes are uniformly distributed over the genome. Analysis of synteny with Allium sativum (garlic) showed collinearity but also major rearrangements between both species. This assembly is the first high-quality genome sequence available for the study of onion and will be a valuable resource for further research.
Intragenic complementation at the Lotus japonicus CELLULOSE SYNTHASE-LIKE D1 locus rescues root hair defects International-journal

Bogumil J Karas, Loretta Ross, Mara Novero, Lisa Amyot, Arina Shrestha, Sayaka Inada, Michiharu Nakano, Tatsuya Sakai, Dario Bonetta, Sushei Sato, Jeremy D Murray, Paola Bonfante, Krzysztof Szczyglowski

Plant Physiology　186　(4)　2037-2050　2021/08/03
Publisher: Oxford University Press ({OUP})
DOI： 10.1093/plphys/kiab204 　

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Root hair cells form the primary interface of plants with the soil environment, playing key roles in nutrient uptake and plant defense. In legumes, they are typically the first cells to become infected by nitrogen-fixing soil bacteria during root nodule symbiosis. Here, we report a role for the CELLULOSE SYNTHASE-LIKE D1 (CSLD1) gene in root hair development in the legume species Lotus japonicus. CSLD1 belongs to the cellulose synthase protein family that includes cellulose synthases and cellulose synthase-like proteins, the latter thought to be involved in the biosynthesis of hemicellulose. We describe 11 Ljcsld1 mutant alleles that impose either short (Ljcsld1-1) or variable (Ljcsld1-2 to 11) root hair length phenotypes. Examination of Ljcsld1-1 and one variable-length root hair mutant, Ljcsld1-6, revealed increased root hair cell wall thickness, which in Ljcsld1-1 was significantly more pronounced and also associated with a strong defect in root nodule symbiosis. Lotus japonicus plants heterozygous for Ljcsld1-1 exhibited intermediate root hair lengths, suggesting incomplete dominance. Intragenic complementation was observed between alleles with mutations in different CSLD1 domains, suggesting CSLD1 function is modular and that the protein may operate as a homodimer or multimer during root hair development.
A Dual-Color Tyr-FISH Method for Visualizing Genes/Markers on Plant Chromosomes to Create Integrated Genetic and Cytogenetic Maps

Natalia Kudryavtseva, Aleksey Ermolaev, Gennady Karlov, Ilya, Masayoshi Shigyo, Shusei Sato, Ludmila khrustaleva

International Journal of Molecular Sciences　22　(11)　5860-5860　2021/05/30
Publisher: {MDPI} {AG}
DOI： 10.3390/ijms22115860 　

eISSN： 1422-0067

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In situ imaging of molecular markers on a physical chromosome is an indispensable tool for refining genetic maps and validation genome assembly at the chromosomal level. Despite the tremendous progress in genome sequencing, the plant genome assembly at the chromosome level remains a challenge. Recently developed optical and Hi-C mapping are aimed at assistance in genome assembly. For high confidence in the genome assembly at chromosome level, more independent approaches are required. The present study is aimed at refining an ultrasensitive Tyr-FISH technique and developing a reliable and simple method of in situ mapping of a short unique DNA sequences on plant chromosomes. We have carefully analyzed the critical steps of the Tyr-FISH to find out the reasons behind the flaws of this technique. The accurate visualization of markers/genes appeared to be significantly dependent on the means of chromosome slide preparation, probe design and labeling, and high stringency washing. Appropriate adjustment of these steps allowed us to detect a short DNA sequence of 1.6 Kb with a frequency of 51.6%. Based on our results, we developed a more reliable and simple protocol for dual-color Tyr-FISH visualization of unique short DNA sequences on plant chromosomes. This new protocol can allow for more accurate determination of the physical distance between markers and can be applied for faster integration of genetic and cytogenetic maps.
Mesorhizobium sp. J8 can establish symbiosis with Glycyrrhiza uralensis, increasing glycyrrhizin production

Ikuko Kusaba, Takahiro Nakao, Hiroko Maita, Shusei Sato, Ryota Chijiiwa, Emi Yamada, Susumu Arima, Mareshige Kojoma, Kanji Ishimaru, Ryo Akashi, Akihiro Suzuki

Plant Biotechnology　38　(1)　57-66　2021/03/25
Publisher: Japanese Society for Plant Cell and Molecular Biology
DOI： 10.5511/plantbiotechnology.20.1124a 　

ISSN： 1342-4580

eISSN： 1347-6114
Rhizobia use a pathogenic-like effector to hijack leguminous nodulation signalling. International-journal

Safirah Tasa Nerves Ratu, Albin Teulet, Hiroki Miwa, Sachiko Masuda, Hien P Nguyen, Michiko Yasuda, Shusei Sato, Takakazu Kaneko, Makoto Hayashi, Eric Giraud, Shin Okazaki

Scientific reports　11　(1)　2034-2034　2021/01/21

DOI： 10.1038/s41598-021-81598-6 　

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Legume plants form a root-nodule symbiosis with rhizobia. This symbiosis establishment generally relies on rhizobium-produced Nod factors (NFs) and their perception by leguminous receptors (NFRs) that trigger nodulation. However, certain rhizobia hijack leguminous nodulation signalling via their type III secretion system, which functions in pathogenic bacteria to deliver effector proteins into host cells. Here, we report that rhizobia use pathogenic-like effectors to hijack legume nodulation signalling. The rhizobial effector Bel2-5 resembles the XopD effector of the plant pathogen Xanthomonas campestris and could induce nitrogen-fixing nodules on soybean nfr mutant. The soybean root transcriptome revealed that Bel2-5 induces expression of cytokinin-related genes, which are important for nodule organogenesis and represses ethylene- and defense-related genes that are deleterious to nodulation. Remarkably, Bel2-5 introduction into a strain unable to nodulate soybean mutant affected in NF perception conferred nodulation ability. Our findings show that rhizobia employ and have customized pathogenic effectors to promote leguminous nodulation signalling.
Identification of flavonoid 8-hydroxylase with gossypetin synthase activity from flower specific EST data of Lotus Japonicus.

Yasuhide Hiraga, Norimoto Shimada, Yoshiki Nagashima, Kunihiro Suda, Tina Kanamori, Kanako Ishiguro, Yuka Sato, Hideki Hirakawa, Shusei Sato, Tomoyoshi Akashi, Yoshikazu Tanaka, Daisaku Ohta, Koh Aoki, Daisuke Shibata, Hideyuki Suzuki, Kota Kera

Plant & cell physiology　62　(3)　411-423　2021/01/08

DOI： 10.1093/pcp/pcaa171 　

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Lotus japonicus is a model legume, that accumulates 8-hydroxyflavonol derivatives such as gossypetin (8-hydroxyquercetin) 3-O-glycoside, which confer the yellow color to its petals. An enzyme, flavonoid 8-hydroxylase (LjF8H), is assumed to be involved in the biosynthesis, but the specific gene is yet to be identified. The LjF8H cDNA was isolated as an FAD-binding monooxygenase-like protein using flower buds and flower specific EST data of L. japonicus. LjF8H is a single copy gene on chromosome III consisting of six exons. The conserved FAD- and NAD(P)H-dependent oxidase motifs were found in LjF8H. Phylogenetic analysis suggested that LjF8H is a member of the flavin monooxygenase group, but distinctly different from other known flavonoid oxygenases. Analysis of recombinant yeast microsome expressing LjF8H revealed that the enzyme catalyzed the 8-hydroxylation of quercetin. Other flavonoids, such as naringenin, eriodictyol, apigenin, luteolin, taxifolin, and kaempferol also acted as substrates of LjF8H. This broad substrate acceptance was unlike known F8Hs in other plants. Interestingly, flavanone and flavanonol, which have saturated C-C bond at positions 2 and 3 of the flavonoid C-ring, produced 6-hyroxylflavonoids as a by-product of the enzymatic reaction. Furthermore, LjF8H only accepted the 2S-isomer of naringenin, suggesting the conformational state of the substrates might affect product specificity. The overexpression of LjF8H in Arabidopsis thaliana and Petunia hybrida synthesized gossypetin and 8-hydroxykaempferol, respectively, indicating that LjF8H was functional in plant cells. In conclusion, this study represents the first instance of cloning and identification of F8Hs responsible for gossypetin biosynthesis.
Massive rhizobial genomic variation associated with partner quality in Lotus-Mesorhizobium symbiosis. International-journal

Masaru Bamba, Seishiro Aoki, Tadashi Kajita, Hiroaki Setoguchi, Yasuyuki Watano, Shusei Sato, Takashi Tsuchimatsu

FEMS microbiology ecology　96　(12)　2020/11/27

DOI： 10.1093/femsec/fiaa202 　
5 飼料用トウモロコシへのAM 菌資材接種効果発現条件の検討（関東支部講演会，2019年度各支部会）

大友量, 出口新, 八木哲生, 佐藤修正

日本土壌肥料学会講演要旨集　66　215-215　2020/09/01
Publisher: 一般社団法人日本土壌肥料学会
DOI： 10.20710/dohikouen.66.0_215_2 　

ISSN： 0288-5840

eISSN： 2424-0575
Intragenic Complementation ofCellulose Synthase-Like D1alleles in Root Hair Development

Bogumil J. Karas, Loretta Ross, Mara Novero, Lisa Amyot, Sayaka Inada, Michiharu Nakano, Tatsuya Sakai, Sushei Sato, Jeremy Dale Murray, Paola Bonfante, Krzysztof Szczyglowski

2020/03/04

DOI： 10.1101/2020.03.02.973545 　
The Lotus japonicus nucleoporin GLE1 is involved in symbiotic association with rhizobia. International-journal Peer-reviewed

Akito Imai, Mai Ohtani, Asami Nara, Anna Tsukakoshi, Aya Narita, Hideki Hirakawa, Shusei Sato, Norio Suganuma

Physiologia plantarum　168　(3)　590-600　2020/03

DOI： 10.1111/ppl.12996 　
The rhizobial autotransporter determines the symbiotic nitrogen fixation activity of Lotus japonicus in a host-specific manner. International-journal Peer-reviewed

Yoshikazu Shimoda, Yuki Nishigaya, Hiroko Yamaya-Ito, Noritoshi Inagaki, Yosuke Umehara, Hideki Hirakawa, Shusei Sato, Toshimasa Yamazaki, Makoto Hayashi

Proceedings of the National Academy of Sciences of the United States of America　117　(3)　1806-1815　2020/01/21

DOI： 10.1073/pnas.1913349117 　
3-1-42 農耕地利用の強度に応答したアーバスキュラー菌根菌群集の収斂と多様性の維持機構（3-1 土壌生物の生態と機能 2020年度岡山大会）

丹羽理恵子, 小八重善裕, 大友量, 林正紀, 唐澤敏彦, 神山拓也, 丸山隼人, 江沢辰広, 佐藤修正, 平川英樹, 吉田重信, 佐藤孝, 鈴木貴恵, 佐藤匠, 俵谷圭太郎, 福永亜矢子

日本土壌肥料学会講演要旨集　66　34-34　2020
Publisher: 一般社団法人日本土壌肥料学会
DOI： 10.20710/dohikouen.66.0_34_3 　

ISSN： 0288-5840
SEN1 gene from Lotus japonicus MG20 improves nitrogen fixation and plant growth

Nishida, Y., Hiraoka, R., Kawano, S., Suganuma, N., Sato, S., Watanabe, S., Anai, T., Arima, S., Tominaga, A., Suzuki, A.

Soil Science and Plant Nutrition　66　(6)　864-869　2020

DOI： 10.1080/00380768.2020.1834829 　

ISSN： 0038-0768

eISSN： 1747-0765
Insights into the evolution of symbiosis gene copy number and distribution from a chromosome-scale Lotus japonicus Gifu genome sequence International-journal

Kamal, N., Mun, T., Reid, D., Lin, J.-S., Akyol, T.Y., Sandal, N., Asp, T., Hirakawa, H., Stougaard, J., Mayer, K.F.X., Sato, S., Andersen, S.U.

DNA Research　27　(3)　2020

DOI： 10.1093/dnares/dsaa015 　
Hemoglobins in the legume–Rhizobium symbiosis

Larrainzar, E., Villar, I., Rubio, M.C., P{\'e}rez-Rontom{\'e}, C., Huertas, R., Sato, S., Mun, J.-H., Becana, M.

New Phytologist　228　(2)　2020

DOI： 10.1111/nph.16673 　
Efficient mutation induction using heavy-ion beam irradiation and simple genomic screening with random primers in taro (Colocasia esculenta L. Schott)

Matsuyama, T., Watanabe, M., Murota, Y., Nakata, N., Kitamura, H., Shimokawa, T., Ebisuzaki, T., Wada, S., Sato, S., Tabata, S.

Scientia Horticulturae　272　2020

DOI： 10.1016/j.scienta.2020.109568 　

ISSN： 0304-4238

eISSN： 1879-1018
Deploying root microbiome of halophytes to improve salinity tolerance of crops

Akyol, T.Y., Sato, S., Turkan, I.

Plant Biotechnology Reports　14　(2)　2020

DOI： 10.1007/s11816-020-00594-w 　
Lotus japonicus Nuclear Factor YA1, a nodule emergence stage-specific regulator of auxin signalling

Shrestha, A., Zhong, S., Therrien, J., Huebert, T., Sato, S., Mun, T., Andersen, S.U., Stougaard, J., Lepage, A., Niebel, A., Ross, L., Szczyglowski, K.

New Phytologist　229　(3)　1535-1552　2020
Publisher: Wiley
DOI： 10.1111/nph.16950 　
LAZY3 plays a pivotal role in positive root gravitropism in Lotus japonicus International-journal Peer-reviewed

Chen, Y., Xu, S., Tian, L., Liu, L., Huang, M., Xu, X., Song, G., Wu, P., Sato, S., Jiang, H., Wu, G.

Journal of Experimental Botany　71　(1)　168-177　2020

DOI： 10.1093/jxb/erz429 　
Extreme genetic signatures of local adaptation during Lotus japonicus colonization of Japan International-journal Peer-reviewed

Shah, N., Wakabayashi, T., Kawamura, Y., Skovbjerg, C.K., Wang, M.-Z., Mustamin, Y., Isomura, Y., Gupta, V., Jin, H., Mun, T., Sandal, N., Azuma, F., Fukai, E., Seren, Ü., Kusakabe, S., Kikuchi, Y., Nitanda, S., Kumaki, T., Hashiguchi, M., Tanaka, H., Hayashi, A., Sønderkær, M., Nielsen, K.L., Schneeberger, K., Vilhjalmsson, B., Akashi, R., Stougaard, J., Sato, S., Schierup, M.H., Andersen, S.U.

Nature Communications　11　(1)　253-253　2020

DOI： 10.1038/s41467-019-14213-y 　
Lotus accessions possess multiple checkpoints triggered by different type iii secretion system effectors of the wide-host-range symbiont Bradyrhizobium elkanii USDA61 Peer-reviewed

Kusakabe, S., Higasitani, N., Kaneko, T., Yasuda, M., Miwa, H., Okazaki, S., Saeki, K., Higashitani, A., Sato, S.

Microbes and Environments　35　(1)　2020

DOI： 10.1264/jsme2.ME19141 　
Toward repositioning Allium vegetable crops as global commodities: Opportunities and challenges for future application of omics and phytomedomics platforms to crop improvement Invited

Shigyo, M., Fujito, S., Sato, S.

Acta Horticulturae　1251　1-7　2019/10
Publisher: Acta Horticulturae
DOI： 10.17660/ActaHortic.2019.1251.1 　
Development of molecular markers associated with resistance to Meloidogyne incognita by performing quantitative trait locus analysis and genome-wide association study in sweetpotato. International-journal Peer-reviewed

Rumi Sasai, Hiroaki Tabuchi, Kenta Shirasawa, Kazuki Kishimoto, Shusei Sato, Yoshihiro Okada, Akihide Kuramoto, Akira Kobayashi, Sachiko Isobe, Makoto Tahara, Yuki Monden

DNA research : an international journal for rapid publication of reports on genes and genomes　26　(5)　399-409　2019/10/01

DOI： 10.1093/dnares/dsz018 　
Exploring Genetic Diversity and Signatures of Horizontal Gene Transfer in Nodule Bacteria Associated with Lotus japonicus in Natural Environments. International-journal Peer-reviewed

Masaru Bamba, Seishiro Aoki, Tadashi Kajita, Hiroaki Setoguchi, Yasuyuki Watano, Shusei Sato, Takashi Tsuchimatsu

Molecular plant-microbe interactions : MPMI　32　(9)　1110-1120　2019/09

DOI： 10.1094/MPMI-02-19-0039-R 　

ISSN： 0894-0282
Isolation of Native Arbuscular Mycorrhizal Fungi within Young Thalli of the Liverwort Marchantia paleacea. International-journal Peer-reviewed

Yoshihiro Kobae, Ryo Ohtomo, Sho Morimoto, Daiki Sato, Tomomi Nakagawa, Norikuni Oka, Shusei Sato

Plants (Basel, Switzerland)　8　(6)　2019/05/30

DOI： 10.3390/plants8060142 　

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Arbuscular mycorrhizal fungi (AMF) are a group of soil microorganisms that establish symbioses with most land plant species. "Root trap culture" generally has been used for isolating a single regenerated spore in order to establish a monospecific, native AMF line. Roots may be co-colonized with multiple AMF species; however, only a small portion of AMF within roots sporulate, and do so only under certain conditions. In this study, we tested whether young thalli (<2 mm) of the liverwort Marchantia paleacea harbour monospecific AMF, and can be used as a vegetative inoculant line. When M. paleacea gemmae were co-cultivated with roots obtained from the field, the young thalli were infected by AMF via rhizoids and formed arbuscules after 18 days post-sowing. Ribosomal DNA sequencing of the AMF-colonized thalli (mycothalli) revealed that they harboured phylogenetically diverse AMF; however, new gemmae sown around transplanted mycothalli showed evidence of colonization from phylogenetically uniform Rhizophagus species. Of note, mycothalli can also be used as an inoculum. These results suggest that the young thalli of M. paleacea can potentially isolate monospecific AMF from field soil in a spore-independent manner.
Expression and functional analyses of five B-class genes in grape hyacinth (Muscari armeniacum). Peer-reviewed

Kana Miura, Mutsumi Nakada, Shosei Kubota, Shusei Sato, Soichiro Nagano, Akie Kobayashi, Mika Teranishi, Masaru Nakano, Akira Kanno

The Horticulture Journal　88　(2)　284-292　2019/04
Publisher: Japanese Society for Horticultural Science
DOI： 10.2503/hortj.utd-036 　

ISSN： 2189-0102

eISSN： 2189-0110
Impact of Introduction of Arbuscular Mycorrhizal Fungi on the Root Microbial Community in Agricultural Fields. Peer-reviewed

Turgut Yigit Akyol, Rieko Niwa, Hideki Hirakawa, Hayato Maruyama, Takumi Sato, Takae Suzuki, Ayako Fukunaga, Takashi Sato, Shigenobu Yoshida, Keitaro Tawaraya, Masanori Saito, Tatsuhiro Ezawa, Shusei Sato

Microbes and environments　34　(1)　23-32　2019/03/30

DOI： 10.1264/jsme2.ME18109 　

ISSN： 1342-6311

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Arbuscular mycorrhizal (AM) fungi are important members of the root microbiome and may be used as biofertilizers for sustainable agriculture. To elucidate the impact of AM fungal inoculation on indigenous root microbial communities, we used high-throughput sequencing and an analytical pipeline providing fixed operational taxonomic units (OTUs) as an output to investigate the bacterial and fungal communities of roots treated with a commercial AM fungal inoculum in six agricultural fields. AM fungal inoculation significantly influenced the root microbial community structure in all fields. Inoculation changed the abundance of indigenous AM fungi and other fungal members in a field-dependent manner. Inoculation consistently enriched several bacterial OTUs by changing the abundance of indigenous bacteria and introducing new bacteria. Some inoculum-associated bacteria closely interacted with the introduced AM fungi, some of which belonged to the genera Burkholderia, Cellulomonas, Microbacterium, Sphingomonas, and Streptomyces and may be candidate mycorrhizospheric bacteria that contribute to the establishment and/or function of the introduced AM fungi. Inoculated AM fungi also co-occurred with several indigenous bacteria with putative beneficial traits, suggesting that inoculated AM fungi may recruit specific taxa to confer better plant performance. The bacterial families Methylobacteriaceae, Acetobacteraceae, Armatimonadaceae, and Alicyclobacillaceae were consistently reduced by the inoculation, possibly due to changes in the host plant status caused by the inoculum. To the best of our knowledge, this is the first large-scale study to investigate interactions between AM fungal inoculation and indigenous root microbial communities in agricultural fields.
Widely targeted metabolome and transcriptome landscapes of Allium fistulosum-A. cepa chromosome addition lines revealed a flavonoid hot spot on chromosome 5A. International-journal Peer-reviewed

Mostafa Abdelrahman, Sho Hirata, Yuji Sawada, Masami Yokota Hirai, Shusei Sato, Hideki Hirakawa, Yoko Mine, Keisuke Tanaka, Masayoshi Shigyo

Scientific reports　9　(1)　3541-3541　2019/03/05

DOI： 10.1038/s41598-019-39856-1 　

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Here, we report a comprehensive analysis of the widely targeted metabolome and transcriptome profiles of Allium fistulosum L. (FF) with the single extra chromosome of shallot [A. cepa L. Aggregatum group (AA)] to clarify the novel gene functions in flavonoid biosynthesis. An exhaustive metabolome analysis was performed using the selected reaction monitoring mode of liquid chromatography-tandem quadrupole mass spectrometry, revealing a specific accumulation of quercetin, anthocyanin and flavone glucosides in AA and FF5A. The addition of chromosome 5A from the shallot to A. fistulosum induced flavonoid accumulation in the recipient species, which was associated with the upregulation of several genes including the dihydroflavonol 4-reductase, chalcone synthase, flavanone 3-hydroxylase, UDP-glucose flavonoid-3-O-glucosyltransferase, anthocyanin 5-aromatic acyltransferase-like, pleiotropic drug resistance-like ATP binding cassette transporter, and MYB14 transcriptional factor. Additionally, an open access Allium Transcript Database (Allium TDB, http://alliumtdb.kazusa.or.jp ) was generated by using RNA-Seq data from different genetic stocks including the A. fistulosum-A. cepa monosomic addition lines. The functional genomic approach presented here provides an innovative means of targeting the gene responsible for flavonoid biosynthesis in A. cepa. The understanding of flavonoid compounds and biosynthesis-related genes would facilitate the development of noble Allium varieties with unique chemical constituents and, subsequently, improved plant stress tolerance and human health benefits.
Symbiotic incompatibility between soybean and Bradyrhizobium arises from one amino acid determinant in soybean Rj2 protein. International-journal Peer-reviewed

Masayuki Sugawara, Yosuke Umehara, Akito Kaga, Masaki Hayashi, Masao Ishimoto, Shusei Sato, Hisayuki Mitsui, Kiwamu Minamisawa

PloS one　14　(9)　e0222469　2019

DOI： 10.1371/journal.pone.0222469 　

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Cultivated soybean (Glycine max) carrying the Rj2 allele restricts nodulation with specific Bradyrhizobium strains via host immunity, mediated by rhizobial type III secretory protein NopP and the host resistance protein Rj2. Here we found that the single isoleucine residue I490 in Rj2 is required for induction of symbiotic incompatibility. Furthermore, we investigated the geographical distribution of the Rj2-genotype soybean in a large set of germplasm by single nucleotide polymorphism (SNP) genotyping using a SNP marker for I490. By allelic comparison of 79 accessions in the Japanese soybean mini-core collection, we suggest substitution of a single amino acid residue (R490 to I490) in Rj2 induces symbiotic incompatibility with Bradyrhizobium diazoefficiens USDA 122. The importance of I490 was verified by complementation of rj2-soybean by the dominant allele encoding the Rj2 protein containing I490 residue. The Rj2 allele was also found in Glycine soja, the wild progenitor of G. max, and their single amino acid polymorphisms were associated with the Rj2-nodulation phenotype. By SNP genotyping against 1583 soybean accessions, we detected the Rj2-genotype in 5.4% of G. max and 7.7% of G. soja accessions. Distribution of the Rj2-genotype soybean plants was relatively concentrated in the temperate Asian region. These results provide important information about the mechanism of host genotype-specific symbiotic incompatibility mediated by host immunity and suggest that the Rj2 gene has been maintained by environmental conditions during the process of soybean domestication.
Inflorescence Meristem Fate Is Dependent on Seed Development and FRUITFULL in Arabidopsis thaliana. International-journal Peer-reviewed

Vicente Balanzà, Irene Martínez-Fernández, Shusei Sato, Martin F Yanofsky, Cristina Ferrándiz

Frontiers in plant science　10　1622-1622　2019

DOI： 10.3389/fpls.2019.01622 　

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After a vegetative phase, plants initiate the floral transition in response to both environmental and endogenous cues to optimize reproductive success. During this process, the vegetative shoot apical meristem (SAM), which was producing leaves and branches, becomes an inflorescence SAM and starts producing flowers. Inflorescences can be classified in two main categories, depending on the fate of the inflorescence meristem: determinate or indeterminate. In determinate inflorescences, the SAM differentiates directly, or after the production of a certain number of flowers, into a flower, while in indeterminate inflorescences the SAM remains indeterminate and produces continuously new flowers. Even though indeterminate inflorescences have an undifferentiated SAM, the number of flowers produced by a plant is not indefinite and is characteristic of each species, indicating that it is under genetic control. In Arabidopsis thaliana and other species with indeterminate inflorescences, the end of flower production occurs by a regulated proliferative arrest of inflorescence meristems on all reproductive branches that is reminiscent of a state of induced dormancy and does not involve the determination of the SAM. This process is controlled genetically by the FRUITFULL-APETALA2 (FUL-AP2) pathway and by a correlative control exerted by the seeds through a mechanism not well understood yet. In the absence of seeds, meristem proliferative arrest does not occur, and the SAM remains actively producing flowers until it becomes determinate, differentiating into a terminal floral structure. Here we show that the indeterminate growth habit of Arabidopsis inflorescences is a facultative condition imposed by the meristematic arrest directed by FUL and the correlative signal of seeds. The terminal differentiation of the SAM when seed production is absent correlates with the induction of AGAMOUS expression in the SAM. Moreover, terminal flower formation is strictly dependent on the activity of FUL, as it was never observed in ful mutants, regardless of the fertility of the plant or the presence/absence of the AG repression exerted by APETALA2 related factors.
Divergent evolution of rice blast resistance Pi54 locus in the genus Oryza. International-journal Peer-reviewed

Zhang L, Nakagomi Y, Endo T, Teranishi M, Hidema J, Sato S, Higashitani A

Rice (New York, N.Y.)　11　(1)　63-63　2018/12

DOI： 10.1186/s12284-018-0256-8 　

ISSN： 1939-8425

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BACKGROUND: The rice blast resistance gene Pi54 was cloned from Oryza sativa ssp. indica cv. Tetep, which conferred broad-spectrum resistance against Magnaporthe oryzae. Pi54 allelic variants have been identified in not only domesticates but also wild rice species, but the majority of japonica and some indica cultivars lost the function. RESULTS: We here found that Pi54 (Os11g0639100) and its homolog Os11g0640600 (named as #11) were closely located on a 25 kbp region in japonica cv. Sasanishiki compared to a 99 kbp region in japonica cv. Nipponbare. Sasanishiki lost at least six genes containing one other R-gene cluster (Os11g0639600, Os11g0640000, and Os11g0640300). Eight AA-genome species including five wild rice species were classified into either Nipponbare or Sasanishiki type. The BB-genome wild rice species O. punctata was Sasanishiki type. The FF-genome wild rice species O. brachyantha (the basal lineage of Oryza) was neither, because Pi54 was absent and the orientation of the R-gene cluster was reversed in comparison with Nipponbare-type species. The phylogenetic analysis showed that #11gene of O. brachyantha was on the root of both Pi54 and #11 alleles. All Nipponbare-type Pi54 alleles were specifically disrupted by 143 and 37/44 bp insertions compared to Tetep and Sasanishiki type. In addition, Pi54 of japonica cv. Sasanishiki lost nucleotide-binding site and leucine-rich repeat (NBS-LRR) domains owing to additional mutations. CONCLUSIONS: These results suggest that Pi54 might be derived from a tandem duplication of the ancestor #11 gene in progenitor FF-genome species. Two divergent structures of Pi54 locus caused by a mobile unit containing the nearby R-gene cluster could be developed before domestication. This study provides a potential genetic resource of rice breeding for blast resistance in modern cultivars sustainability.
Genetic control of meristem arrest and life span in Arabidopsis by a FRUITFULL-APETALA2 pathway Peer-reviewed

Vicente Balanzà, Irene Martínez-Fernández, Shusei Sato, Martin F. Yanofsky, Kerstin Kaufmann, Gerco C. Angenent, Marian Bemer, Cristina Ferrándiz

Nature Communications　9　(1)　565　2018/12/01
Publisher: Nature Publishing Group
DOI： 10.1038/s41467-018-03067-5 　

ISSN： 2041-1723
Development of SSR markers linked to QTL reducing leaf hair density and grapevine downy mildew resistance in Vitis vinifera Peer-reviewed

Atsushi Kono, Yusuke Ban, Nobuhito Mitani, Hiroshi Fujii, Shusei Sato, Koichi Suzaki, Akifumi Azuma, Noriyuki Onoue, Akihiko Sato

MOLECULAR BREEDING　38　(11)　138　2018/11

DOI： 10.1007/s11032-018-0889-8 　

ISSN： 1380-3743

eISSN： 1572-9788
A plant chitinase controls cortical infection thread progression and nitrogen-fixing symbiosis Peer-reviewed

Malolepszy, A., Kelly, S., S?rensen, K.K., James, E.K., Kalisch, C., Bozsoki, Z., Panting, M., Andersen, S.U., Sato, S., Tao, K., Jensen, D.B., Vinther, M., de Jong, N., Madsen, L.H., Umehara, Y., Gysel, K., Berentsen, M.U., Blaise, M., Jensen, K.J., Thygesen, M.B., S, al, N., Andersen, K.R., Radutoiu, S.

eLife　7　2018/10

DOI： 10.7554/eLife.38874 　
Variation in bradyrhizobial NopP effector determines symbiotic incompatibility with Rj2-soybeans via effector-triggered immunity. International-journal Peer-reviewed

Sugawara M, Takahashi S, Umehara Y, Iwano H, Tsurumaru H, Odake H, Suzuki Y, Kondo H, Konno Y, Yamakawa T, Sato S, Mitsui H, Minamisawa K

Nature communications　9　(1)　3139-3139　2018/08

DOI： 10.1038/s41467-018-05663-x 　

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Genotype-specific incompatibility in legume-rhizobium symbiosis has been suggested to be controlled by effector-triggered immunity underlying pathogenic host-bacteria interactions. However, the rhizobial determinant interacting with the host resistance protein (e.g., Rj2) and the molecular mechanism of symbiotic incompatibility remain unclear. Using natural mutants of Bradyrhizobium diazoefficiens USDA 122, we identified a type III-secretory protein NopP as the determinant of symbiotic incompatibility with Rj2-soybean. The analysis of nopP mutations and variants in a culture collection reveal that three amino acid residues (R60, R67, and H173) in NopP are required for Rj2-mediated incompatibility. Complementation of rj2-soybean by the Rj2 allele confers the incompatibility induced by USDA 122-type NopP. In response to incompatible strains, Rj2-soybean plants activate defense marker gene PR-2 and suppress infection thread number at 2 days after inoculation. These results suggest that Rj2-soybeans monitor the specific variants of NopP and reject bradyrhizobial infection via effector-triggered immunity mediated by Rj2 protein.
Lotus japonicus Genetic, Mutant, and Germplasm Resources Peer-reviewed

Hashiguchi, M., Tanaka, H., Muguerza, M., Akashi, R., S, al, N.N., Andersen, S.U., Sato, S.

Current protocols in plant biology　3　(2)　e20070　2018/06

DOI： 10.1002/cppb.20070 　
Dissection of niche competition between introduced and indigenous arbuscular mycorrhizal fungi with respect to soybean yield responses. International-journal Peer-reviewed

Rieko Niwa, Takuya Koyama, Takumi Sato, Katsuki Adachi, Keitaro Tawaraya, Shusei Sato, Hideki Hirakawa, Shigenobu Yoshida, Tatsuhiro Ezawa

Scientific reports　8　(1)　7419-7419　2018/05/09

DOI： 10.1038/s41598-018-25701-4 　

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Arbuscular mycorrhizal (AM) fungi associate with most land plants and deliver phosphorus to the host. Identification of biotic/abiotic factors that determine crop responses to AM fungal inoculation is an essential step for successful application of the fungi in sustainable agriculture. We conducted three field trials on soybean with a commercial inoculum and developed a new molecular tool to dissect interactions between the inoculum and indigenous fungi on the MiSeq sequencing platform. Regression analysis indicated that sequence read abundance of the inoculum fungus was the most significant factor that determined soybean yield responses to the inoculation, suggesting that dominance of the inoculum fungus is a necessary condition for positive yield responses. Agricultural practices (fallow/cropping in the previous year) greatly affected the colonization levels (i.e. read abundances) of the inoculum fungus via altering the propagule density of indigenous AM fungi. Analysis of niche competition revealed that the inoculum fungus competed mainly with the indigenous fungi that are commonly distributed in the trial sites, probably because their life-history strategy is the same as that of the inoculum fungus. In conclusion, we provide a new framework for evaluating the significance of environmental factors towards successful application of AM fungi in agriculture.
Genome structure of Rosa multiflora, a wild ancestor of cultivated roses Peer-reviewed

Noriko Nakamura, Hideki Hirakawa, Shusei Sato, Shungo Otagaki, Shogo Matsumoto, Satoshi Tabata, Yoshikazu Tanaka

DNA Research　25　(2)　113-121　2018/04/01
Publisher: Oxford University Press
DOI： 10.1093/dnares/dsx042 　

ISSN： 1756-1663 1340-2838
Association studies of seed-yield related traits for Jatropha curcas L. in Mexico. Peer-reviewed

Li Haiyan, Tsuchimoto Suguru, Harada Kyuya, Yamasaki Masanori, Sakai Hiroe, Wada Naoki, Alipour Atefeh, Sasai Tomohiro, Tsunekawa Atsushi, Tsujimoto Hisashi, Ando Takayuki, Tomemori Hisashi, Sato Shusei, Hirakawa Hideki, Pecina-Quintero Victor, Zamarripa Alfredo, Fukui Kiichi

Tropical Agriculture and Development　62　68-77　2018/03
Complete Genome Sequence of the Nonheterocystous Cyanobacterium Pseudanabaena sp. ABRG5-3. International-journal Peer-reviewed

Naoyuki Tajima, Yu Kanesaki, Shusei Sato, Hirofumi Yoshikawa, Fumito Maruyama, Ken Kurokawa, Hiroyuki Ohta, Tomoyasu Nishizawa, Munehiko Asayama, Naoki Sato

Genome announcements　6　(6)　2018/02/08

DOI： 10.1128/genomeA.01608-17 　

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We report here the complete sequences of the main genome (4.8 Mb) and seven plasmids of the semifilamentous, nonheterocystous cyanobacterium Pseudanabaena sp. ABRG5-3, a strain isolated from a pond in Japan. These data are expected to enhance our understanding of the Pseudanabaena subclade near the root of cyanobacterial diversity.
3-2-1 機械学習アルゴリズムを用いたネギにおけるアーバスキュラー菌根菌接種効果の発現予測（3-2 土壌生物の応用と制御，2018年度神奈川大会）

丹羽理恵子, 福永亜矢子, 江沢辰広, 佐藤修正, 平川英樹, 吉田重信, 佐藤孝, 鈴木貴恵, 齋藤雅典, 佐藤匠, 俵谷圭太郎

日本土壌肥料学会講演要旨集　64　41-41　2018
Publisher: 一般社団法人日本土壌肥料学会
DOI： 10.20710/dohikouen.64.0_41_1 　

ISSN： 0288-5840
Extreme genetic signatures of local adaptation during plant colonization

Niraj Shah, Tomomi Wakabayashi, Yasuko Kawamura, Cathrine Kiel, Skovbjerg, Ming-Zhuo Wang, Yusdar Mustamin, Yoshiko Isomura, Vikas Gupta, Haojie Jin, Terry Mun, Niels Sandal, Fuyuki Azuma, Eigo Fukai, Ümit Seren, Shohei Kusakabe, Yuki Kikuchi, Shogo Nitanda, Takashi Kumaki, Mads Sønderkær, Kaare Lehmann Nielsen, Korbinian Schneeberger, Jens Stougaard, Shusei Sato, Mikkel, Heide Schierup, Stig Uggerhøj Andersen

BioRxiv　2018
Inoculum effect of arbuscular mycorrhizal fungi on soybeans grown in long-term bare-fallowed field with low phosphate availability

Hayashi Masaki, Niwa Rieko, Urashima Yasufumi, Suga Yuko, Sato Shusei, Hirakawa Hideki, Yoshida Shigenobu, Ezawa Tatsuhiro, Karasawa Toshihiko

Soil Science and Plant Nutrition　64　(3)　306-311　2018
Publisher: Informa UK Limited
DOI： 10.1080/00380768.2018.1473007 　

ISSN： 0038-0768
Loss-of-function of ASPARTIC PEPTIDASE NODULE-INDUCED 1 (APN1) in Lotus japonicus restricts efficient nitrogen-fixing symbiosis with specific Mesorhizobium loti strains Peer-reviewed

Hiroko Yamaya-Ito, Yoshikazu Shimoda, Tsuneo Hakoyama, Shusei Sato, Takakazu Kaneko, Md Shakhawat Hossain, Satoshi Shibata, Masayoshi Kawaguchi, Makoto Hayashi, Hiroshi Kouchi, Yosuke Umehara

PLANT JOURNAL　93　(1)　5-16　2018/01

DOI： 10.1111/tpj.13759 　

ISSN： 0960-7412

eISSN： 1365-313X
Correction: RNA-sequencing-based transcriptome and biochemical analyses of steroidal saponin pathway in a complete set of Allium fistulosum-A. cepa monosomic addition lines. International-journal Peer-reviewed

Abdelrahman M, El-Sayed M, Sato S, Hirakawa H, Ito SI, Tanaka K, Mine Y, Sugiyama N, Suzuki Y, Yamauchi N, Shigyo M

PloS one　13　(1)　e0190813　2018

DOI： 10.1371/journal.pone.0190813 　

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[This corrects the article DOI: 10.1371/journal.pone.0181784.].
Identification of Bradyrhizobium elkanii genes involved in incompatibility with Vigna radiate Peer-reviewed

Hien P Nguyen, Hiroki Miwa, Takakazu Kaneko, Shusei Sato, Shin Okazaki

Genes　8　(12)　2017/12/08
Publisher: MDPI AG
DOI： 10.3390/genes8120374 　

ISSN： 2073-4425
Enhanced photosynthetic capacity increases nitrogen metabolism through the coordinated regulation of carbon and nitrogen assimilation in Arabidopsis thaliana.

Kumi Otori, Noriaki Tanabe, Toshiki Maruyama, Shigeru Sato, Shuichi Yanagisawa, Masahiro Tamoi, Shigeru Shigeoka

Journal of plant research　130　(5)　909-927　2017/09

DOI： 10.1007/s10265-017-0950-4 　

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Plant growth and productivity depend on interactions between the metabolism of carbon and nitrogen. The sensing ability of internal carbon and nitrogen metabolites (the C/N balance) enables plants to regulate metabolism and development. In order to investigate the effects of an enhanced photosynthetic capacity on the metabolism of carbon and nitrogen in photosynthetically active tissus (source leaves), we herein generated transgenic Arabidopsis thaliana plants (ApFS) that expressed cyanobacterial fructose-1,6-/sedoheptulose-1,7-bisphosphatase in their chloroplasts. The phenotype of ApFS plants was indistinguishable from that of wild-type plants at the immature stage. However, as plants matured, the growth of ApFS plants was superior to that of wild-type plants. Starch levels were higher in ApFS plants than in wild-type plants at 2 and 5 weeks. Sucrose levels were also higher in ApFS plants than in wild-type plants, but only at 5 weeks. On the other hand, the contents of various free amino acids were lower in ApFS plants than in wild-type plants at 2 weeks, but were similar at 5 weeks. The total C/N ratio was the same in ApFS plants and wild-type plants, whereas nitrite levels increased in parallel with elevations in nitrate reductase activity at 5 weeks in ApFS plants. These results suggest that increases in the contents of photosynthetic intermediates at the early growth stage caused a temporary imbalance in the free-C/free-N ratio and, thus, the feedback inhibition of the expression of genes involved in the Calvin cycle and induction of the expression of those involved in nitrogen metabolism due to supply deficient free amino acids for maintenance of the C/N balance in source leaves of ApFS plants.
RNA-sequencing-based transcriptome and biochemical analyses of steroidal saponin pathway in a complete set of Allium fistulosum -A. cepa monosomic addition lines Peer-reviewed

Mostafa Abdelrahman, Magdi El-Sayed, Shusei Sato, Hideki Hirakawa, Shin-ichi Ito, Keisuke Tanaka, Yoko Mine, Nobuo Sugiyama, Minoru Suzuki, Naoki Yamauchi, Masayoshi Shigyo

PLOS ONE　12　(8)　e0181784　2017/08

DOI： 10.1371/journal.pone.0181784 　

ISSN： 1932-6203
LjMOT1, a high-affinity molybdate transporter from Lotus japonicus, is essential for molybdate uptake, but not for the delivery to nodules. International-journal Peer-reviewed

Guilan Duan, Tsuneo Hakoyama, Takehiro Kamiya, Hiroki Miwa, Fabien Lombardo, Shusei Sato, Satoshi Tabata, Zheng Chen, Toshihiro Watanabe, Takuro Shinano, Toru Fujiwara

The Plant journal : for cell and molecular biology　90　(6)　1108-1119　2017/06

DOI： 10.1111/tpj.13532 　

ISSN： 0960-7412

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Molybdenum (Mo) is an essential nutrient for plants, and is required for nitrogenase activity of legumes. However, the pathways of Mo uptake from soils and then delivery to the nodules have not been characterized in legumes. In this study, we characterized a high-affinity Mo transporter (LjMOT1) from Lotus japonicus. Mo concentrations in an ethyl methanesulfonate-mutagenized line (ljmot1) decreased by 70-95% compared with wild-type (WT). By comparing the DNA sequences of four AtMOT1 homologs between mutant and WT lines, one point mutation was found in LjMOT1, which altered Trp292 to a stop codon; no mutation was found in the other homologous genes. The phenotype of Mo concentrations in F2 progeny from ljmot1 and WT crosses were associated with genotypes of LjMOT1. Introduction of endogenous LjMOT1 to ljmot1 restored Mo accumulation to approximately 60-70% of the WT. Yeast expressing LjMOT1 exhibited high Mo uptake activity, and the Km was 182 nm. LjMOT1 was expressed mainly in roots, and its expression was not affected by Mo supply or rhizobium inoculation. Although Mo accumulation in the nodules of ljmot1 was significantly lower than that of WT, it was still high enough for normal nodulation and nitrogenase activity, even for cotyledons-removed ljmot1 plants grown under low Mo conditions, in this case the plant growth was significantly inhibited by Mo deficiency. Our results suggest that LjMOT1 is an essential Mo transporter in L. japonicus for Mo uptake from the soil and growth, but is not for Mo delivery to the nodules.
'Yotsuboshi', a new F1 hybrid strawberry of seed propagation type for year-round production

T. Mochizuki, T. Mori, J. Kohori, H. Kitamura, T. Inokuchi, I. Kato, K. Sone, M. Ishikawa, F. Maeda, M. Fukami, S. Isobe, S. Sato

Acta Horticulturae　1156　53-59　2017/04

DOI： 10.17660/ActaHortic.2017.1156.7 　

ISSN： 0567-7572
Large-scale collection of full-length cDNA and transcriptome analysis in Hevea brasiliensis Peer-reviewed

Yuko Makita, Kiaw Kiaw Ng, G. Veera Singham, Mika Kawashima, Hideki Hirakawa, Shusei Sato, Ahmad Sofiman Othman, Minami Matsui

DNA RESEARCH　24　(2)　159-167　2017/04

DOI： 10.1093/dnares/dsw056 　

ISSN： 1340-2838

eISSN： 1756-1663
Function and evolution of a Lotus japonicus AP2/ERF family transcription factor that is required for development of infection threads Peer-reviewed

Koji Yano, Seishiro Aoki, Meng Liu, Yosuke Umehara, Norio Suganuma, Wataru Iwasaki, Shusei Sato, Takashi Soyano, Hiroshi Kouchi, Masayoshi Kawaguchi

DNA RESEARCH　24　(2)　193-203　2017/04

DOI： 10.1093/dnares/dsw052 　

ISSN： 1340-2838

eISSN： 1756-1663
3-2-2 管理・環境要因に基づいたネギにおけるアーバスキュラー菌根菌接種効果発現の予測モデル構築（3-2 土壌生物の応用と制御，2017年度仙台大会）

丹羽理恵子, 福永亜矢子, 江沢辰広, 佐藤修正, 平川英樹, 吉田重信, 佐藤孝, 鈴木貴恵, 齋藤雅典, 佐藤匠, 俵谷圭太郎

日本土壌肥料学会講演要旨集　63　42-42　2017
Publisher: 一般社団法人日本土壌肥料学会
DOI： 10.20710/dohikouen.63.0_42_2 　

ISSN： 0288-5840
Establishment of a genome-wide and quantitative protocol for assessment of transcriptional activity at human retrotransposon L1 antisense promoters Peer-reviewed

Koichi Ishiguro, Saneyuki Higashino, Hideki Hirakawa, Shusei Sato, Yasunori Aizawa

Genes and Genetic Systems　92　(5)　243-249　2017
Publisher: Genetics Society of Japan
DOI： 10.1266/ggs.16-00053 　

ISSN： 1880-5779 1341-7568
Complete genome sequence of Bradyrhizobium diazoefficiens USDA 122, a nitrogen-fixing soybean symbiont Peer-reviewed

Masayuki Sugawara, Takahiro Tsukui, Takakazu Kaneko, Yoshiyuki Ohtsubo, Shusei Sato, Yuji Nagata, Masataka Tsuda, Hisayuki Mitsui, Kiwamu Minamisawa

Genome Announcements　5　(9)　2017
Publisher: American Society for Microbiology
DOI： 10.1128/genomeA.01743-16 　

ISSN： 2169-8287
Genetic Tracing of Jatropha curcas L. from Its Mesoamerican Origin to the World. International-journal Peer-reviewed

Haiyan Li, Suguru Tsuchimoto, Kyuya Harada, Masanori Yamasaki, Hiroe Sakai, Naoki Wada, Atefeh Alipour, Tomohiro Sasai, Atsushi Tsunekawa, Hisashi Tsujimoto, Takayuki Ando, Hisashi Tomemori, Shusei Sato, Hideki Hirakawa, Victor P Quintero, Alfredo Zamarripa, Primitivo Santos, Adel Hegazy, Abdalla M Ali, Kiichi Fukui

Frontiers in plant science　8　1539-1539　2017

DOI： 10.3389/fpls.2017.01539 　

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Jatropha curcas L. (Jatropha), a shrub species of the family Euphorbiaceae, has been recognized as a promising biofuel plant for reducing greenhouse gas emissions. However, recent attempts at commercial cultivation in Africa and Asia have failed because of low productivity. It is important to elucidate genetic diversity and relationship in worldwide Jatropha genetic resources for breeding of better commercial cultivars. Here, genetic diversity was analyzed by using 246 accessions from Mesoamerica, Africa and Asia, based on 59 simple sequence repeat markers and eight retrotransposon-based insertion polymorphism markers. We found that central Chiapas of Mexico possesses the most diverse genetic resources, and the Chiapas Central Depression could be the center of origin. We identified three genetic groups in Mesoamerica, whose distribution revealed a distinct geographic cline. One of them consists mainly of accessions from central Chiapas. This suggests that it represents the original genetic group. We found two Veracruz accessions in another group, whose ancestors might be shipped from Port of Veracruz to the Old World, to be the source of all African and Asian Jatropha. Our results suggest the human selection that caused low productivity in Africa and Asia, and also breeding strategies to improve African and Asian Jatropha. Cultivars improved in the productivity will contribute to expand mass commercial cultivation of Jatropha in Africa and Asia to increase biofuel production, and finally will support in the battle against the climate change.
Lotus japonicus NF-YA1 Plays an Essential Role During Nodule Differentiation and Targets Members of the SHI/STY Gene Family Peer-reviewed

Md Shakhawat Hossain, Arina Shrestha, Sihui Zhong, Mandana Miri, Ryan S. Austin, Shusei Sato, Loretta Ross, Terry Huebert, Alexandre Tromas, Ivone Torres-Jerez, Yuhong Tang, Michael Udvardi, Jeremy D. Murray, Krzysztof Szczyglowski

MOLECULAR PLANT-MICROBE INTERACTIONS　29　(12)　950-964　2016/12

DOI： 10.1094/MPMI-10-16-0206-R 　

ISSN： 0894-0282

eISSN： 1943-7706
The Cardamine hirsuta genome offers insight into the evolution of morphological diversity (vol 2, 16167, 2016) Peer-reviewed

Xiangchao Gan, Angela Hay, Michiel Kwantes, Georg Haberer, Asis Hallab, Raffaele Dello Ioio, Hugo Hofhuis, Bjorn Pieper, Maria Cartolano, Ulla Neumann, Lachezar A. Nikolov, Baoxing Song, Mohsen Hajheidari, Roman Briskine, Evangelia Kougioumoutzi, Daniela Vlad, Suvi Broholm, Jotun Hein, Khalid Meksem, David Lightfoot, Kentaro K. Shimizu, Rie Shimizu-Inatsugi, Martha Imprialou, David Kudrna, Rod Wing, Shusei Sato, Peter Huijser, Dmitry Filatov, Klaus F. X. Mayer, Richard Mott, Miltos Tsiantis

NATURE PLANTS　2　(12)　16189　2016/12

DOI： 10.1038/NPLANTS.2016.189 　

ISSN： 2055-026X

eISSN： 2055-0278
The Cardamine hirsuta genome offers insight into the evolution of morphological diversity Peer-reviewed

Xiangchao Gan, Angela Hay, Michiel Kwantes, Georg Haberer, Asis Hallab, Raffaele Dello Ioio, Hugo Hofhuis, Bjorn Pieper, Maria Cartolano, Ulla Neumann, Lachezar A. Nikolov, Baoxing Song, Mohsen Hajheidari, Roman Briskine, Evangelia Kougioumoutzi, Daniela Vlad, Suvi Broholm, Jotun Hein, Khalid Meksem, David Lightfoot, Kentaro K. Shimizu, Rie Shimizu-Inatsugi, Martha Imprialou, David Kudrna, Rod Wing, Shusei Sato, Peter Huijser, Dmitry Filatov, Klaus F. X. Mayer, Richard Mott, Miltos Tsiantis

NATURE PLANTS　2　(11)　16167　2016/11

DOI： 10.1038/NPLANTS.2016.167 　

ISSN： 2055-026X

eISSN： 2055-0278
Sequencing and analysis of the complete organellar genomes of Parmales, a closely related group to Bacillariophyta (diatoms) Peer-reviewed

Naoyuki Tajima, Kenji Saitoh, Shusei Sato, Fumito Maruyama, Mutsuo Ichinomiya, Shinya Yoshikawa, Ken Kurokawa, Hiroyuki Ohta, Satoshi Tabata, Akira Kuwata, Naoki Sato

CURRENT GENETICS　62　(4)　887-896　2016/11

DOI： 10.1007/s00294-016-0598-y 　

ISSN： 0172-8083

eISSN： 1432-0983
Blue Light Perception by Both Roots and Rhizobia Inhibits Nodule Formation in Lotus japonicus Peer-reviewed

Aya Shimomura, Ayumi Naka, Nobuyuki Miyazaki, Sayaka Moriuchi, Susumu Arima, Shusei Sato, Hideki Hirakawa, Makoto Hayashi, Maskit Maymon, Ann M. Hirsch, Akihiro Suzukit

MOLECULAR PLANT-MICROBE INTERACTIONS　29　(10)　786-796　2016/10

DOI： 10.1094/MPMI-03-16-0048-R 　

ISSN： 0894-0282

eISSN： 1943-7706
High-resolution genetic maps of Lotus japonicus and L-burttii based on re-sequencing of recombinant inbred lines Peer-reviewed

Niraj Shah, Hideki Hirakawa, Shohei Kusakabe, Niels Sandal, Jens Stougaard, Mikkel Heide Schierup, Shusei Sato, Stig Uggerhoj Andersen

DNA RESEARCH　23　(5)　487-494　2016/10

DOI： 10.1093/dnares/dsw033 　

ISSN： 1340-2838

eISSN： 1756-1663
The LORE1 insertion mutant resource Peer-reviewed

Anna Malolepszy, Terry Mun, Niels Sandal, Vikas Gupta, Manu Dubin, Dorian Urbanski, Niraj Shah, Asger Bachmann, Eigo Fukai, Hideki Hirakawa, Satoshi Tabata, Marcin Nadzieja, Katharina Markmann, Junyi Su, Yosuke Umehara, Takashi Soyano, Akira Miyahara, Shusei Sato, Makoto Hayashi, Jens Stougaard, Stig U. Andersen

PLANT JOURNAL　88　(2)　306-317　2016/10

DOI： 10.1111/tpj.13243 　

ISSN： 0960-7412

eISSN： 1365-313X
Metagenomic Analysis Revealed Methylamine and Ureide Utilization of Soybean-Associated Methylobacterium Peer-reviewed

Tomoyuki Minami, Misue Anda, Hisayuki Mitsui, Masayuki Sugawara, Takakazu Kaneko, Shusei Sato, Seishi Ikeda, Takashi Okubo, Hirohito Tsurumaru, Kiwamu Minamisawa

MICROBES AND ENVIRONMENTS　31　(3)　268-278　2016/09

DOI： 10.1264/jsme2.ME16035 　

ISSN： 1342-6311
A high-density genetic linkage map of bronze loquat based on SSR and RAPD markers Peer-reviewed

Shinji Fukuda, Keiichiro Ishimoto, Shusei Sato, Shingo Terakami, Naofumi Hiehata, Toshiya Yamamoto

TREE GENETICS & GENOMES　12　(4)　2016/08

DOI： 10.1007/s11295-016-1040-9 　

ISSN： 1614-2942

eISSN： 1614-2950
The Complete Chloroplast Genome Sequence of Zoysia matrella (L.) Merr. Peer-reviewed

Hidenori Tanaka, Hideki Hirakawa, Melody Muguerza, Masatsugu Hashiguchi, Satoshi Tabata, Ryo Akashi, Shusei Sato

CROP SCIENCE　56　(3)　1206-1212　2016/05

DOI： 10.2135/cropsci2015.08.0517 　

ISSN： 0011-183X

eISSN： 1435-0653
Sequencing and comparative analyses of the genomes of zoysiagrasses Peer-reviewed

Hidenori Tanaka, Hideki Hirakawa, Shunichi Kosugi, Shinobu Nakayama, Akiko Ono, Akiko Watanabe, Masatsugu Hashiguchi, Takahiro Gondo, Genki Ishigaki, Melody Muguerza, Katsuya Shimizu, Noriko Sawamura, Takayasu Inoue, Yuichi Shigeki, Naoki Ohno, Satoshi Tabata, Ryo Akashi, Shusei Sato

DNA RESEARCH　23　(2)　171-180　2016/04

DOI： 10.1093/dnares/dsw006 　

ISSN： 1340-2838

eISSN： 1756-1663
Genetic Structure and Speciation of Zoysiagrass Ecotypes Collected in Japan Peer-reviewed

Hidenori Tanaka, Risa Tokunaga, Melody Muguerza, Yasuo Kitazaki, Masatsugu Hashiguchi, Shusei Sato, Satoshi Tabata, Ryo Akashi

CROP SCIENCE　56　(2)　818-826　2016/03

DOI： 10.2135/cropsci2015.04.0249 　

ISSN： 0011-183X

eISSN： 1435-0653
Tomato Genome Sequence Peer-reviewed

Shusei Sato, Satoshi Tabata

FUNCTIONAL GENOMICS AND BIOTECHNOLOGY IN SOLANACEAE AND CUCURBITACEAE CROPS　70　1-13　2016

DOI： 10.1007/978-3-662-48535-4_1 　

ISSN： 0934-943X
Whole-genome sequence of the nitrogen-fixing symbiotic rhizobium Mesorhizobium loti strain TONO Peer-reviewed

Yoshikazu Shimoda, Hideki Hirakawa, Shusei Sato, Kazuhiko Saeki, Makoto Hayashi

Genome Announcements　4　(5)　2016
Publisher: American Society for Microbiology
DOI： 10.1128/genomeA.01016-16 　

ISSN： 2169-8287
Functional and expression analyses of transcripts based on full-length cDNAs of Sorghum bicolor Peer-reviewed

Setsuko Shimada, Yuko Makita, Tomoko Kuriyama-Kondou, Mika Kawashima, Yoshiki Mochizuki, Hideki Hirakawa, Shusei Sato, Tetsuro Toyoda, Minami Matsui

DNA RESEARCH　22　(6)　485-493　2015/12

DOI： 10.1093/dnares/dsv030 　

ISSN： 1340-2838

eISSN： 1756-1663
SCARN a Novel Class of SCAR Protein That Is Required for Root-Hair Infection during Legume Nodulation Peer-reviewed

Liping Qiu, Jie-shun Lin, Ji Xu, Shusei Sato, Martin Parniske, Trevor L. Wang, J. Allan Downie, Fang Xie

PLoS Genetics　11　(10)　2015/10

DOI： 10.1371/journal.pgen.1005623 　

ISSN： 1553-7404
Integrating transcriptome and target metabolome variability in doubled haploids of Allium cepa for abiotic stress protection Peer-reviewed

Mostafa Abdelrahman, Yuji Sawada, Ryo Nakabayashi, Shusei Sato, Hideki Hirakawa, Magdi El-Sayed, Masami Yokota Hirai, Kazuki Saito, Naoki Yamauchi, Masayoshi Shigyo

MOLECULAR BREEDING　35　(10)　2015/10

DOI： 10.1007/s11032-015-0378-2 　

ISSN： 1380-3743

eISSN： 1572-9788
Identification of Bradyrhizobium elkanii Genes Involved in Incompatibility with Soybean Plants Carrying the Rj4 Allele Peer-reviewed

Omar M. Faruque, Hiroki Miwa, Michiko Yasuda, Yoshiharu Fujii, Takakazu Kaneko, Shusei Sato, Shin Okazaki

APPLIED AND ENVIRONMENTAL MICROBIOLOGY　81　(19)　6710-6717　2015/10

DOI： 10.1128/AEM.01942-15 　

ISSN： 0099-2240

eISSN： 1098-5336
Molecular Characterization of LjABCG1, an ATP-Binding Cassette Protein in Lotus japonicus Peer-reviewed

Akifumi Sugiyama, Shoju Fukuda, Kojiro Takanashi, Miki Yoshioka, Hirofumi Yoshioka, Yoshihiro Narusaka, Mari Narusaka, Mikiko Kojima, Hitoshi Sakakibara, Nobukazu Shitan, Shusei Sato, Satoshi Tabata, Masayoshi Kawaguchi, Kazufumi Yazaki

PLOS ONE　10　(9)　e0139127　2015/09

DOI： 10.1371/journal.pone.0139127 　

ISSN： 1932-6203
The Arabidopsis TAC Position Viewer: a high-resolution map of transformation-competent artificial chromosome (TAC) clones aligned with the Arabidopsis thaliana Columbia-0 genome. International-journal Peer-reviewed

Yoshitsugu Hirose, Kunihiro Suda, Yao-Guang Liu, Shusei Sato, Yukino Nakamura, Koji Yokoyama, Naoki Yamamoto, Shigeru Hanano, Eiji Takita, Nozomu Sakurai, Hideyuki Suzuki, Yasukazu Nakamura, Takakazu Kaneko, Kentaro Yano, Satoshi Tabata, Daisuke Shibata

The Plant journal : for cell and molecular biology　83　(6)　1114-22　2015/09

DOI： 10.1111/tpj.12949 　

ISSN： 0960-7412

More details Close

We present a high-resolution map of genomic transformation-competent artificial chromosome (TAC) clones extending over all Arabidopsis thaliana (Arabidopsis) chromosomes. The Arabidopsis genomic TAC clones have been valuable genetic tools. Previously, we constructed an Arabidopsis genomic TAC library consisting of more than 10,000 TAC clones harboring large genomic DNA fragments extending over the whole Arabidopsis genome. Here, we determined 13,577 end sequences from 6987 Arabidopsis TAC clones and mapped 5937 TAC clones to precise locations, covering approximately 90% of the Arabidopsis chromosomes. We present the large-scale data set of TAC clones with high-resolution mapping information as a Java application tool, the Arabidopsis TAC Position Viewer, which provides ready-to-go transformable genomic DNA clones corresponding to certain loci on Arabidopsis chromosomes. The TAC clone resources will accelerate genomic DNA cloning, positional walking, complementation of mutants and DNA transformation for heterologous gene expression.
Gene Expression Profiles in Jatropha Under Drought Stress and During Recovery

Joyce A. Cartagena, Motoaki Seki, Maho Tanaka, Takaki Yamauchi, Shusei Sato, Hideki Hirakawa, Takashi Tsuge

PLANT MOLECULAR BIOLOGY REPORTER　33　(4)　1075-1087　2015/08

DOI： 10.1007/s11105-014-0815-0 　

ISSN： 0735-9640

eISSN： 1572-9818
Symbiosis Island Shuffling with Abundant Insertion Sequences in the Genomes of Extra-Slow-Growing Strains of Soybean Bradyrhizobia Peer-reviewed

Takayuki Iida, Manabu Itakura, Mizue Anda, Masayuki Sugawara, Tsuyoshi Isawa, Takashi Okubo, Shusei Sato, Kaori Chiba-Kakizaki, Kiwamu Minamisawa

APPLIED AND ENVIRONMENTAL MICROBIOLOGY　81　(12)　4143-4154　2015/06

DOI： 10.1128/AEM.00741-15 　

ISSN： 0099-2240

eISSN： 1098-5336
Genome Analysis of a Novel Bradyrhizobium sp DOA9 Carrying a Symbiotic Plasmid Peer-reviewed

Shin Okazaki, Rujirek Noisangiam, Takashi Okubo, Takakazu Kaneko, Kenshiro Oshima, Masahira Hattori, Kamonluck Teamtisong, Pongpan Songwattana, Panlada Tittabutr, Nantakorn Boonkerd, Kazuhiko Saeki, Shusei Sato, Toshiki Uchiumi, Kiwamu Minamisawa, Neung Teaumroong

PLOS ONE　10　(2)　e0117392　2015/02

DOI： 10.1371/journal.pone.0117392 　

ISSN： 1932-6203
Development of F₁-hybrid Strawberry of Seed Propagation Type Named 'Yotsuboshi' by Collaborative Breeding among Institutes

Mori Toshiki, Isobe Sachiko, Sato Shusei, Kohori Junna, Kitamura Hatsuyoshi, Inokuchi Takumi, Kato Ichiro, Sone Kazuyoshi, Ishikawa Masami, Maeda Fumi, Fukami Masanobu

Horticultural Research (Japan)　14　(4)　409-418　2015
Publisher: THE JAPANESE SOCIETY FOR HORTICULTURAL SCIENCE
DOI： 10.2503/hrj.14.409 　

ISSN： 1347-2658

More details Close

A seed propagation type of strawberry cultivar, 'Yotsuboshi', was collectively developed by four institutes belonging to Mie Prefecture, Kagawa Prefecture, Chiba Prefecture, and the National Agriculture and Food Research Organization. It is an F₁-hybrid, whose maternal and paternal lines are a 'Miebohon 1 gou' and 'A8S4-147', respectively. 'Yotsuboshi' has several attractive traits, such as a clear red fruit color, excellent fruit shape, high yielding ability, and superior taste with a high content of soluble solids and moderate acidity. The behavior of flower initiation is quite unique: 'Yotsuboshi' exhibits earliness under natural conditions with a lower temperature and shorter day length, while flower initiation is also induced under long-day treatment. Genotype analysis with the published DNA markers for strawberry variety identification demonstrated that 23 of the 25 CPAS markers and 45 SSR markers were available to differentiate 'Yotsuboshi' from other varieties. We expect 'Yotsuboshi' to become widely cultivated across Japan.
Polymorphisms of E1 and GIGANTEA in wild populations of Lotus japonicus (vol 127, pg 651, 2014) Peer-reviewed

Tomomi Wakabayashi, Hana Oh, Masayoshi Kawaguchi, Kyuya Harada, Shusei Sato, Hajime Ikeda, Hiroaki Setoguchi

JOURNAL OF PLANT RESEARCH　128　(1)　221-221　2015/01

DOI： 10.1007/s10265-014-0671-x 　

ISSN： 0918-9440

eISSN： 1618-0860
Development of transcriptome shotgun assembly-derived markers in bunching onion (Allium fistulosum)

Hikaru Tsukazaki, Shigenori Yaguchi, Shusei Sato, Hideki Hirakawa, Yuichi Katayose, Hiroyuki Kanamori, Kanako Kurita, Takeshi Itoh, Masahiko Kumagai, Satoshi Mizuno, Masao Hamada, Hiroyuki Fukuoka, Ken-ichiro Yamashita, John A. McCallum, Masayoshi Shigyo, Tadayuki Wako

MOLECULAR BREEDING　35　(1)　1-11　2015/01

DOI： 10.1007/s11032-015-0265-x 　

ISSN： 1380-3743

eISSN： 1572-9788
SCARN a Novel Class of SCAR Protein That Is Required for Root-Hair Infection during Legume Nodulation Peer-reviewed

Liping Qiu, Jie-Shun Lin, Ji Xu, Shusei Sato, Martin Parniske, Trevor L. Wang, J. Allan Downie, Fang Xie

PLoS Genetics　11　(10)　e1005623　2015
Publisher: Public Library of Science
DOI： 10.1371/journal.pgen.1005623 　

ISSN： 1553-7404 1553-7390
Draft Genome Sequence of Eggplant (Solanum melongena L.): the Representative Solanum Species Indigenous to the Old World

Hideki Hirakawa, Kenta Shirasawa, Koji Miyatake, Tsukasa Nunome, Satomi Negoro, Akio Ohyama, Hirotaka Yamaguchi, Shusei Sato, Sachiko Isobe, Satoshi Tabata, Hiroyuki Fukuoka

DNA RESEARCH　21　(6)　649-660　2014/12

DOI： 10.1093/dnares/dsu027 　

ISSN： 1340-2838

eISSN： 1756-1663
XTH20 and XTH19 regulated by ANAC071 under auxin flow are involved in cell proliferation in incised Arabidopsis inflorescence stems Peer-reviewed

Weerasak Pitaksaringkarn, Keita Matsuoka, Masashi Asahina, Kenji Miura, Kimiyo Sage-Ono, Michiyuki Ono, Ryusuke Yokoyama, Kazuhiko Nishitani, Tadashi Ishii, Hiroaki Iwai, Shinobu Satoh

PLANT JOURNAL　80　(4)　604-614　2014/11

DOI： 10.1111/tpj.12654 　

ISSN： 0960-7412

eISSN： 1365-313X
Polymorphisms of E1 and GIGANTEA in wild populations of Lotus japonicus

Tomomi Wakabayashi, Hana Oh, Masayoshi Kawaguchi, Kyuya Harada, Shusei Sato, Hajime Ikeda, Setoguchi Hiroaki

JOURNAL OF PLANT RESEARCH　127　(6)　651-660　2014/11

DOI： 10.1007/s10265-014-0649-8 　

ISSN： 0918-9440

eISSN： 1618-0860
NODULE INCEPTION creates a long-distance negative feedback loop involved in homeostatic regulation of nodule organ production Peer-reviewed

Takashi Soyano, Hideki Hirakawa, Shusei Sato, Makoto Hayashi, Masayoshi Kawaguchi

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA　111　(40)　14607-14612　2014/10

DOI： 10.1073/pnas.1412716111 　

ISSN： 0027-8424
Development of EST-SSR markers and construction of a linkage map in faba bean (Vicia faba)

Walid El-Rodeny, Mitsuhiro Kimura, Hideki Hirakawa, Attia Sabah, Kenta Shirasawa, Shusei Sato, Satoshi Tabata, Shigemi Sasamoto, Akiko Watanabe, Kumiko Kawashima, Midori Kato, Tsuyuko Wada, Hisano Tsuruoka, Chika Takahashi, Chiharu Minami, Keiko Nanri, Shinobu Nakayama, Mitsuyo Kohara, Manabu Yamada, Yoshie Kishida, Tsunakazu Fujishiro, Sachiko Isobe

BREEDING SCIENCE　64　(3)　252-263　2014/09

DOI： 10.1270/jsbbs.64.252 　

ISSN： 1344-7610

eISSN： 1347-3735
Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai)

Shingo Terakami, Chikako Nishitani, Miyuki Kunihisa, Kenta Shirasawa, Shusei Sato, Satoshi Tabata, Kanako Kurita, Hiroyuki Kanamori, Yuichi Katayose, Norio Takada, Toshihiro Saito, Toshiya Yamamoto

TREE GENETICS & GENOMES　10　(4)　853-863　2014/08

DOI： 10.1007/s11295-014-0726-0 　

ISSN： 1614-2942

eISSN： 1614-2950
Sll0939 is induced by Slr0967 in the cyanobacterium Synechocystis sp. PCC6803 and is essential for growth under various stress conditions. International-journal

Junji Uchiyama, Ryosuke Asakura, Atsushi Moriyama, Yuko Kubo, Yousuke Shibata, Yuka Yoshino, Hiroko Tahara, Ayumi Matsuhashi, Shusei Sato, Yasukazu Nakamura, Satoshi Tabata, Hisataka Ohta

Plant physiology and biochemistry : PPB　81　36-43　2014/08

DOI： 10.1016/j.plaphy.2014.02.007 　

ISSN： 0981-9428
Genetic mapping of the loquat canker resistance locus in bronze loquat (Eriobotrya deflexa)

Shinji Fukuda, Keiichiro Ishimoto, Shusei Sato, Shingo Terakami, Toshiya Yamamoto, Naofumi Hiehata

TREE GENETICS & GENOMES　10　(4)　875-883　2014/08

DOI： 10.1007/s11295-014-0728-y 　

ISSN： 1614-2942

eISSN： 1614-2950
Sequence Analysis of the Genome of Carnation (Dianthus caryophyllus L.)

Masafumi Yagi, Shunichi Kosugi, Hideki Hirakawa, Akemi Ohmiya, Koji Tanase, Taro Harada, Kyutaro Kishimoto, Masayoshi Nakayama, Kazuo Ichimura, Takashi Onozaki, Hiroyasu Yamaguchi, Nobuhiro Sasaki, Taira Miyahara, Yuzo Nishizaki, Yoshihiro Ozeki, Noriko Nakamura, Takamasa Suzuki, Yoshikazu Tanaka, Shusei Sato, Kenta Shirasawa, Sachiko Isobe, Yoshinori Miyamura, Akiko Watanabe, Shinobu Nakayama, Yoshie Kishida, Mitsuyo Kohara, Satoshi Tabata

DNA RESEARCH　21　(3)　231-241　2014/06

DOI： 10.1093/dnares/dst053 　

ISSN： 1340-2838

eISSN： 1756-1663
Lotus japonicus SUNERGOS1 encodes a predicted subunit A of a DNA topoisomerase VI that is required for nodule differentiation and accommodation of rhizobial infection

Hwi Joong Yoon, Md Shakhawat Hossain, Mark Held, Hongwei Hou, Marilyn Kehl, Alexandre Tromas, Shusei Sato, Satoshi Tabata, Stig Uggerhoj Andersen, Jens Stougaard, Loretta Ross, Krzysztof Szczyglowski

PLANT JOURNAL　78　(5)　811-821　2014/06

DOI： 10.1111/tpj.12520 　

ISSN： 0960-7412

eISSN： 1365-313X
Endoreduplication-mediated initiation of symbiotic organ development in Lotus japonicus

Takuya Suzaki, Momoyo Ito, Emiko Yoro, Shusei Sato, Hideki Hirakawa, Naoya Takeda, Masayoshi Kawaguchi

DEVELOPMENT　141　(12)　2441-2445　2014/06

DOI： 10.1242/dev.107946 　

ISSN： 0950-1991

eISSN： 1477-9129
Klebsormidium flaccidum genome reveals primary factors for plant terrestrial adaptation. International-journal Peer-reviewed

Koichi Hori, Fumito Maruyama, Takatomo Fujisawa, Tomoaki Togashi, Nozomi Yamamoto, Mitsunori Seo, Syusei Sato, Takuji Yamada, Hiroshi Mori, Naoyuki Tajima, Takashi Moriyama, Masahiko Ikeuchi, Mai Watanabe, Hajime Wada, Koichi Kobayashi, Masakazu Saito, Tatsuru Masuda, Yuko Sasaki-Sekimoto, Kiyoshi Mashiguchi, Koichiro Awai, Mie Shimojima, Shinji Masuda, Masako Iwai, Takashi Nobusawa, Takafumi Narise, Satoshi Kondo, Hikaru Saito, Ryoichi Sato, Masato Murakawa, Yuta Ihara, Yui Oshima-Yamada, Kinuka Ohtaka, Masanori Satoh, Kohei Sonobe, Midori Ishii, Ryosuke Ohtani, Miyu Kanamori-Sato, Rina Honoki, Daichi Miyazaki, Hitoshi Mochizuki, Jumpei Umetsu, Kouichi Higashi, Daisuke Shibata, Yuji Kamiya, Naoki Sato, Yasukazu Nakamura, Satoshi Tabata, Shigeru Ida, Ken Kurokawa, Hiroyuki Ohta

Nature communications　5　3978-3978　2014/05/28

DOI： 10.1038/ncomms4978 　
Analysis of the complete plastid genome of the unicellular red alga Porphyridium purpureum

Naoyuki Tajima, Shusei Sato, Fumito Maruyama, Ken Kurokawa, Hiroyuki Ohta, Satoshi Tabata, Kohsuke Sekine, Takashi Moriyama, Naoki Sato

JOURNAL OF PLANT RESEARCH　127　(3)　389-397　2014/05

DOI： 10.1007/s10265-014-0627-1 　

ISSN： 0918-9440

eISSN： 1618-0860
CLE6 expression recovers gibberellin deficiency to promote shoot growth in Arabidopsis Peer-reviewed

Haniyeh Bidadi, Keita Matsuoka, Kimiyo Sage-Ono, Jun Fukushima, Weerasak Pitaksaringkarn, Masashi Asahina, Shinjiro Yamaguchi, Shinichiro Sawa, Hiroo Fukuda, Yoshikatsu Matsubayashi, Michiyuki Ono, Shinobu Satoh

PLANT JOURNAL　78　(2)　241-252　2014/04

DOI： 10.1111/tpj.12475 　

ISSN： 0960-7412

eISSN： 1365-313X
Dissection of the Octoploid Strawberry Genome by Deep Sequencing of the Genomes of Fragaria Species

Hideki Hirakawa, Kenta Shirasawa, Shunichi Kosugi, Kosuke Tashiro, Shinobu Nakayama, Manabu Yamada, Mistuyo Kohara, Akiko Watanabe, Yoshie Kishida, Tsunakazu Fujishiro, Hisano Tsuruoka, Chiharu Minami, Shigemi Sasamoto, Midori Kato, Keiko Nanri, Akiko Komaki, Tomohiro Yanagi, Qin Guoxin, Fumi Maeda, Masami Ishikawa, Satoru Kuhara, Shusei Sato, Satoshi Tabata, Sachiko N. Isobe

DNA RESEARCH　21　(2)　169-181　2014/04

DOI： 10.1093/dnares/dst049 　

ISSN： 1340-2838

eISSN： 1756-1663
Characterization of Metabolic States of Arabidopsis thaliana Under Diverse Carbon and Nitrogen Nutrient Conditions via Targeted Metabolomic Analysis Peer-reviewed

Shigeru Sato, Shuichi Yanagisawa

PLANT AND CELL PHYSIOLOGY　55　(2)　306-319　2014/02

DOI： 10.1093/pcp/pct192 　

ISSN： 0032-0781

eISSN： 1471-9053
Effects of Elevated CO2 on Levels of Primary Metabolites and Transcripts of Genes Encoding Respiratory Enzymes and Their Diurnal Patterns in Arabidopsis thaliana: Possible Relationships with Respiratory Rates Peer-reviewed

Chihiro K. Watanabe, Shigeru Sato, Shuichi Yanagisawa, Yukifumi Uesono, Ichiro Terashima, Ko Noguchi

PLANT AND CELL PHYSIOLOGY　55　(2)　341-357　2014/02

DOI： 10.1093/pcp/pct185 　

ISSN： 0032-0781

eISSN： 1471-9053
High CO2 Triggers Preferential Root Growth of Arabidopsis thaliana Via Two Distinct Systems Under Low pH and Low N Stresses Peer-reviewed

Takushi Hachiya, Daisuke Sugiura, Mikiko Kojima, Shigeru Sato, Shuichi Yanagisawa, Hitoshi Sakakibara, Ichiro Terashima, Ko Noguchi

PLANT AND CELL PHYSIOLOGY　55　(2)　269-280　2014/02

DOI： 10.1093/pcp/pcu001 　

ISSN： 0032-0781

eISSN： 1471-9053
Lotus japonicus Cytokinin Receptors Work Partially Redundantly to Mediate Nodule Formation

Mark Held, Hongwei Hou, Mandana Miri, Christian Huynh, Loretta Ross, Md Shakhawat Hossain, Shusei Sato, Satoshi Tabata, Jillian Perry, Trevor L. Wang, Krzysztof Szczyglowski

PLANT CELL　26　(2)　678-694　2014/02

DOI： 10.1105/tpc.113.119362 　

ISSN： 1040-4651

eISSN： 1532-298X
Transcriptomic profiles of nodule senescence in Lotus japonicus and Mesorhizobium loti symbiosis Peer-reviewed

Sirinapa Chungopast, Hideki Hirakawa, Shusei Sato, Yoshihiro Handa, Katsuharu Saito, Masayoshi Kawaguchi, Shigeyuki Tajima, Mika Nomura

PLANT BIOTECHNOLOGY　31　(4)　345-U115　2014

DOI： 10.5511/plantbiotechnology.14.1021a 　

ISSN： 1342-4580
Rhizobial infection does not require cortical expression of upstream common symbiosis genes responsible for the induction of Ca2+ spiking

Teruyuki Hayashi, Yoshikazu Shimoda, Shusei Sato, Satoshi Tabata, Haruko Imaizumi-Anraku, Makoto Hayashi

PLANT JOURNAL　77　(1)　146-159　2014/01

DOI： 10.1111/tpj.12374 　

ISSN： 0960-7412

eISSN： 1365-313X
Erratum to: Polymorphisms of E1 and GIGANTEA in wild populations of Lotus japonicus (Journal of Plant Research, 10.1007/s10265-014-0649-8)

Tomomi Wakabayashi, Hana Oh, Masayoshi Kawaguchi, Kyuya Harada, Shusei Sato, Hajime Ikeda, Hiroaki Setoguchi

Journal of Plant Research　128　(1)　221　2014
Publisher: Springer-Verlag Tokyo
DOI： 10.1007/s10265-014-0671-x 　

ISSN： 0918-9440
Tissue specific localization of pectin-Ca²⁺ cross-linkages and pectin methyl-esterification during fruit ripening in tomato (Solanum lycopersicum) International-journal Peer-reviewed

Hiromi Hyodo, Azusa Terao, Jun Furukawa, Naoya Sakamoto, Hisayoshi Yurimoto, Shinobu Satoh, Hiroaki Iwai

PLoS ONE　8　(11)　e78949　2013/11/13

DOI： 10.1371/journal.pone.0078949 　

ISSN： 1932-6203

eISSN： 1932-6203
Increase in cellulose accumulation and improvement of saccharification by overexpression of arabinofuranosidase in rice Peer-reviewed

Minako Sumiyoshi, Atsuko Nakamura, Hidemitsu Nakamura, Makoto Hakata, Hiroaki Ichikawa, Hirohiko Hirochika, Tadashi Ishii, Shinobu Satoh, Hiroaki Iwai

PLoS ONE　8　(11)　e78269　2013/11/04

DOI： 10.1371/journal.pone.0078269 　

ISSN： 1932-6203
LjMATE1: A Citrate Transporter Responsible for Iron Supply to the Nodule Infection Zone of Lotus japonicas (vol 54, pg 585, 2013) Peer-reviewed

Takanashi Kojiro, Yokosho Kengo, Saeki Kazuhiko, Sugiyama Akifumi, Sato Shusei, Tabata Satoshi, Ma Jian Feng, Yazaki Kazufumi

PLANT AND CELL PHYSIOLOGY　54　(10)　1749-1749　2013/10

DOI： 10.1093/pcp/pct118 　

ISSN： 0032-0781

eISSN： 1471-9053
Erratum: LjMATE1: A Citrate Transporter Responsible for Iron Supply to the Nodule Infection Zone of Lotus japonicas (Plant and Cell Physiology 54: (585-594) DOI:10.1093/pcp/pct019)

Kojiro Takanashi, Kengo Yokosho, Kazuhiko Saeki, Akifumi Sugiyama, Shusei Sato, Satoshi Tabata, Jian Feng Ma, Kazufumi Yazaki

Plant and Cell Physiology　54　(10)　1749-1749　2013/10/01

DOI： 10.1093/pcp/pct118 　

ISSN： 0032-0781

eISSN： 1471-9053
Hijacking of leguminous nodulation signaling by the rhizobial type III secretion system

Shin Okazaki, Takakazu Kaneko, Shusei Sato, Kazuhiko Saeki

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA　110　(42)　17131-17136　2013/10

DOI： 10.1073/pnas.1302360110 　

ISSN： 0027-8424
Two Lotus japonicus symbiosis mutants impaired at distinct steps of arbuscule development

Martin Groth, Sonja Kosuta, Caroline Gutjahr, Kristina Haage, Simone Liesel Hardel, Miriam Schaub, Andreas Brachmann, Shusei Sato, Satoshi Tabata, Kim Findlay, Trevor L. Wang, Martin Parniske

Plant Journal　75　(1)　117-129　2013/07

DOI： 10.1111/tpj.12220 　

ISSN： 0960-7412 1365-313X
Acid stress responsive genes, slr0967 and sll0939, are directly involved in low-pH tolerance of cyanobacterium Synechocystis sp. PCC6803. Peer-reviewed

Ohta H, Kobayashi Y, Moriyama A, Kubo Y, Sambe M, Shibata Y, Haseyama Y, Yoshino Y, Suzuki T, Ikeuhi M, Sato S, Nakamura Y, Uchiyama J, Tabata S

Photosynthesis Research for Food, Fuel and Future.　659-662　2013/06
Genome-Wide SNP Genotyping to Infer the Effects on Gene Functions in Tomato

Hideki Hirakawa, Kenta Shirasawa, Akio Ohyama, Hiroyuki Fukuoka, Koh Aoki, Christophe Rothan, Shusei Sato, Sachiko Isobe, Satoshi Tabata

DNA RESEARCH　20　(3)　221-233　2013/06

DOI： 10.1093/dnares/dst005 　

ISSN： 1340-2838

eISSN： 1756-1663
Genome structure of jatropha curcas L.

Shusei Sato, Hideki Hirakawa, Suguru Tsuchimoto, Hiroe Sakai, Nakako Shibagaki, Sachihiro Matsunaga, Kiichi Fukui, Satoshi Tabata

Jatropha, Challenges for a New Energy Crop　2　563-576　2013/05/01
Publisher: Springer New York
DOI： 10.1007/978-1-4614-4915-7_30 　
TOO MUCH LOVE, a novel kelch repeat-containing F-box protein, functions in the long-distance regulation of the LEGUME-rhizobium symbiosis

Masahiro Takahara, Shimpei Magori, Takashi Soyano, Satoru Okamoto, Chie Yoshida, Koji Yano, Shusei Sato, Satoshi Tabata, Katsushi Yamaguchi, Shuji Shigenobu, Naoya Takeda, Takuya Suzaki, Masayoshi Kawaguchi

Plant and Cell Physiology　54　(4)　433-447　2013/04

DOI： 10.1093/pcp/pct022 　

ISSN： 0032-0781 1471-9053

eISSN： 1471-9053
The cis-acting CTTC-P1BS module is indicative for gene function of LjVTI12, a Qb-SNARE protein gene that is required for arbuscule formation in Lotus japonicus

Frederic Lota, Sarah Wegmueller, Benjamin Buer, Shusei Sato, Andrea Braeutigam, Benjamin Hanf, Marcel Bucher

PLANT JOURNAL　74　(2)　280-293　2013/04

DOI： 10.1111/tpj.12120 　

ISSN： 0960-7412
LjMATE1: A citrate transporter responsible for iron supply to the nodule infection zone of lotus japonicus

Kojiro Takanashi, Kengo Yokosho, Kazuhiko Saeki, Akifumi Sugiyama, Shusei Sato, Satoshi Tabata, Jian Feng Ma, Kazufumi Yazaki

Plant and Cell Physiology　54　(4)　585-594　2013/04

DOI： 10.1093/pcp/pct019 　

ISSN： 0032-0781 1471-9053

eISSN： 1471-9053
The type III secretion system of Bradyrhizobium japonicum USDA122 mediates symbiotic incompatibility with Rj2 soybean plants

Takahiro Tsukui, Shima Eda, Takakazu Kaneko, Shusei Sato, Shin Okazaki, Kaori Kakizaki-Chiba, Manabu Itakura, Hisayuki Mitsui, Akifumi Yamashita, Kimihiro Terasawa, Kiwamu Minamisawa

Applied and Environmental Microbiology　79　(3)　1048-1051　2013/02

DOI： 10.1128/AEM.03297-12 　

ISSN： 0099-2240 1098-5336
Construction of an Integrated High Density Simple Sequence Repeat Linkage Map in Cultivated Strawberry (Fragaria x ananassa) and its Applicability

Sachiko N. Isobe, Hideki Hirakawa, Shusei Sato, Fumi Maeda, Masami Ishikawa, Toshiki Mori, Yuko Yamamoto, Kenta Shirasawa, Mitsuhiro Kimura, Masanobu Fukami, Fujio Hashizume, Tomoko Tsuji, Shigemi Sasamoto, Midori Kato, Keiko Nanri, Hisano Tsuruoka, Chiharu Minami, Chika Takahashi, Tsuyuko Wada, Akiko Ono, Kumiko Kawashima, Naomi Nakazaki, Yoshie Kishida, Mitsuyo Kohara, Shinobu Nakayama, Manabu Yamada, Tsunakazu Fujishiro, Akiko Watanabe, Satoshi Tabata

DNA RESEARCH　20　(1)　79-92　2013/02

DOI： 10.1093/dnares/dss035 　

ISSN： 1340-2838

eISSN： 1756-1663
Whole-genome sequence of the purple photosynthetic bacterium Rhodovulum sulfidophilum strain W4 Peer-reviewed

Shinji Masuda, Koichi Hori, Fumito Maruyama, Shukun Ren, Saori Sugimoto, Nozomi Yamamoto, Hiroshi Mori, Takuji Yamada, Shusei Sato, Satoshi Tabata, Hiroyuki Ohta, Ken Kurokawa

Genome Announcements　1　(4)　2013
Publisher: American Society for Microbiology
DOI： 10.1128/genomeA.00577-13 　

ISSN： 2169-8287
Enzymatic degradation of polyester films by a cutinase-like enzyme from Pseudozyma antarctica: surface plasmon resonance and atomic force microscopy study

Shinozaki, Y, Kikkawa, Y, Sato, S, Fukuoka, T, Watanabe, T, Yoshida, S, Nakajima-Kambe, T, Kitamoto, HK

Appl. Microbiol. Biotechnol.　97　2951-2959　2013

DOI： 10.1007/s00253-012-4673-0 　
Control of Plant Trichome and Root-Hair Development by a Tomato (Solanum lycopersicum) R3 MYB Transcription Factor

Rumi Tominaga-Wada, Yuka Nukumizu, Shusei Sato, Takuji Wada

PLOS ONE　8　(1)　2013/01

DOI： 10.1371/journal.pone.0054019 　

ISSN： 1932-6203
Commonalities and differences among symbiosis islands of three Mesorhizobium loti strains.

Hiroko Kasai-Maita, Hideki Hirakawa, Yasukazu Nakamura, Takakazu Kaneko, Kumiko Miki, Jumpei Maruya, Shin Okazaki, Satoshi Tabata, Kazuhiko Saeki, Shusei Sato

Microbes and environments　28　(2)　275-8　2013

DOI： 10.1264/jsme2.ME12201 　

ISSN： 1342-6311

eISSN： 1347-4405
Structural analyses of the tomato genome

Shusei Sato, Kenta Shirasawa, Satoshi Tabata

PLANT BIOTECHNOLOGY　30　(3)　257-263　2013

DOI： 10.5511/plantbiotechnology.13.0707a 　

ISSN： 1342-4580
Effect of silicon deficiency on secondary cell wall synthesis in rice leaf

Tsuyoshi Yamamoto, Atsuko Nakamura, Hiroaki Iwai, Tadashi Ishii, Jian Feng Ma, Ryusuke Yokoyama, Kazuhiko Nishitani, Shinobu Satoh, Jun Furukawa

JOURNAL OF PLANT RESEARCH　125　(6)　771-779　2012/11

DOI： 10.1007/s10265-012-0489-3 　

ISSN： 0918-9440

eISSN： 1618-0860
Negative regulation of CCaMK is essential for symbiotic infection

Jinqiu Liao, Sylvia Singh, Md S. Hossain, Stig U. Andersen, Loretta Ross, Dario Bonetta, Yonghong Zhou, Shusei Sato, Satoshi Tabata, Jens Stougaard, Krzysztof Szczyglowski, Martin Parniske

PLANT JOURNAL　72　(4)　572-584　2012/11

DOI： 10.1111/j.1365-313X.2012.05098.x 　

ISSN： 0960-7412

eISSN： 1365-313X
The SNARE Protein SYP71 Expressed in Vascular Tissues Is Involved in Symbiotic Nitrogen Fixation in Lotus japonicus Nodules

Tsuneo Hakoyama, Ryo Oi, Kazuya Hazuma, Eri Suga, Yuka Adachi, Mayumi Kobayashi, Rie Akai, Shusei Sato, Eigo Fukai, Satoshi Tabata, Satoshi Shibata, Guo-Jiang Wu, Yoshihiro Hase, Atsushi Tanaka, Masayoshi Kawaguchi, Hiroshi Kouchi, Yosuke Umehara, Norio Suganuma

PLANT PHYSIOLOGY　160　(2)　897-905　2012/10

DOI： 10.1104/pp.112.200782 　

ISSN： 0032-0889

eISSN： 1532-2548
Lotus japonicus ARPC1 Is Required for Rhizobial Infection

Md Shakhawat Hossain, Jinqiu Liao, Euan K. James, Shusei Sato, Satoshi Tabata, Anna Jurkiewicz, Lene H. Madsen, Jens Stougaard, Loretta Ross, Krzysztof Szczyglowski

PLANT PHYSIOLOGY　160　(2)　917-928　2012/10

DOI： 10.1104/pp.112.202572 　

ISSN： 0032-0889
Positional cloning and characterization reveal the molecular basis for soybean maturity locus E1, which regulates photoperiodic flowering Peer-reviewed

Zhengjun Xia, Satoshi Watanabe, Tetsuya Yamada, Yasutaka Tsubokura, Hiroko Nakashima, Hong Zhai, Toyoaki Anai, Shusei Sato, Toshimasa Yamazaki, Shixiang Lu, Hongyan Wu, Satoshi Tabata, Kyuya Harada

Proc. Natl. Acad. Sci. USA　109　(32)　E2155-E2164　2012/08
A Set of Lotus japonicus Gifu x Lotus burttii Recombinant Inbred Lines Facilitates Map-based Cloning and QTL Mapping

Sandal Niels, Haojie Jin, Nombre Rodriguez-Navarro Dulce, Temprano Francisco, Cvitanich Cristina, Brachmann Andreas, Sato Shusei, Kawaguchi Masayoshi, Tabata Satoshi, Parnliske Martin, E. Ruiz-Sainz Jose, U. Andersen Stig, Stougaard Jens

DNA RESEARCH　19　(4)　317-323　2012/08

DOI： 10.1093/dnares/dss014 　

ISSN： 1340-2838
Positional cloning and characterization reveal the molecular basis for soybean maturity locus E1 that regulates photoperiodic flowering

Zhengjun Xia, Satoshi Watanabe, Tetsuya Yamada, Yasutaka Tsubokura, Hiroko Nakashima, Hong Zhai, Toyoaki Anai, Shusei Sato, Toshimasa Yamazaki, Shixiang Lu, Hongyan Wu, Satoshi Tabata, Kyuya Harada

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA　109　(32)　E2155-E2164　2012/08

DOI： 10.1073/pnas.1117982109 　

ISSN： 0027-8424
Transcription Factors of Lotus: Regulation of Isoflavonoid Biosynthesis Requires Coordinated Changes in Transcription Factor Activity

Dale Shelton, Maria Stranne, Lisbeth Mikkelsen, Nima Pakseresht, Tracey Welham, Hideki Hiraka, Satoshi Tabata, Shusei Sato, Suzanne Paquette, Trevor L. Wang, Cathie Martin, Paul Bailey

PLANT PHYSIOLOGY　159　(2)　531-+　2012/06

DOI： 10.1104/pp.112.194753 　

ISSN： 0032-0889
The first genetic maps for subterranean clover (Trifolium subterraneum L.) and comparative genomics with T. pratense L. and Medicago truncatula Gaertn. to identify new molecular markers for breeding

Kioumars Ghamkhar, Sachiko Isobe, Phillip G. H. Nichols, Troy Faithfull, Megan H. Ryan, Richard Snowball, Shusei Sato, Rudi Appels

MOLECULAR BREEDING　30　(1)　213-226　2012/06

DOI： 10.1007/s11032-011-9612-8 　

ISSN： 1380-3743

eISSN： 1572-9788
Large-scale development of expressed sequence tag-derived simple sequence repeat markers and diversity analysis in Arachis spp.

Padmalatha Koilkonda, Shusei Sato, Satoshi Tabata, Kenta Shirasawa, Hideki Hirakawa, Hiroe Sakai, Shigemi Sasamoto, Akiko Watanabe, Tsuyuko Wada, Yoshie Kishida, Hisano Tsuruoka, Tsunakazu Fujishiro, Manabu Yamada, Mitsuyo Kohara, Shigeru Suzuki, Makoto Hasegawa, Hiroyuki Kiyoshima, Sachiko Isobe

MOLECULAR BREEDING　30　(1)　125-138　2012/06

DOI： 10.1007/s11032-011-9604-8 　

ISSN： 1380-3743

eISSN： 1572-9788
Comparative Genetic Mapping and Discovery of Linkage Disequilibrium Across Linkage Groups in White Clover (Trifolium repens L.)

Sachiko N. Isobe, Hiroshi Hisano, Shusei Sato, Hideki Hirakawa, Kenji Okumura, Kenta Shirasawa, Shigemi Sasamoto, Akiko Watanabe, Tsuyuko Wada, Yoshie Kishida, Hisano Tsuruoka, Tsunakazu Fujishiro, Manabu Yamada, Mistuyo Kohara, Satoshi Tabata

G3-GENES GENOMES GENETICS　2　(5)　607-617　2012/05

DOI： 10.1534/g3.112.002600 　

ISSN： 2160-1836
Functional Divergence of MYB-Related Genes, WEREWOLF and AtMYB23 in Arabidopsis

Rumi Tominaga-Wada, Yuka Nukumizu, Shusei Sato, Tomohiko Kato, Satoshi Tabata, Takuji Wada

BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY　76　(5)　883-887　2012/05

DOI： 10.1271/bbb.110811 　

ISSN： 0916-8451

eISSN： 1347-6947
The tomato genome sequence provides insights into fleshy fruit evolution

Shusei Sato, Satoshi Tabata, Hideki Hirakawa, Erika Asamizu, Kenta Shirasawa, Sachiko Isobe, Takakazu Kaneko, Yasukazu Nakamura, Daisuke Shibata, Koh Aoki, Michael Egholm, James Knight, Robert Bogden, Changbao Li, Yang Shuang, Xun Xu, Shengkai Pan, Shifeng Cheng, Xin Liu, Yuanyuan Ren, Jun Wang, Alessandro Albiero, Francesca Dal Pero, Sara Todesco, Joyce Van Eck, Robert M. Buels, Aureliano Bombarely, Joseph R. Gosselin, Minyun Huang, Jonathan A. Leto, Naama Menda, Susan Strickler, Linyong Mao, Shan Gao, Isaak Y. Tecle, Thomas York, Yi Zheng, Julia T. Vrebalov, JeMin Lee, Silin Zhong, Lukas A. Mueller, Willem J. Stiekema, Paolo Ribeca, Tyler Alioto, Wencai Yang, Sanwen Huang, Yongchen Du, Zhonghua Zhang, Jianchang Gao, Yanmei Guo, Xiaoxuan Wang, Ying Li, Jun He, Chuanyou Li, Zhukuan Cheng, Jianru Zuo, Jianfeng Ren, Jiuhai Zhao, Liuhua Yan, Hongling Jiang, Bao Wang, Hongshuang Li, Zhenjun Li, Fuyou Fu, Bingtang Chen, Bin Han, Qi Feng, Danlin Fan, Ying Wang, Hongqing Ling, Yongbiao Xue, Doreen Ware, W. Richard McCombie, Zachary B. Lippman, Jer-Ming Chia, Ke Jiang, Shiran Pasternak, Laura Gelley, Melissa Kramer, Lorinda K. Anderson, Song-Bin Chang, Suzanne M. Royer, Lindsay A. Shearer, Stephen M. Stack, Jocelyn K. C. Rose, Yimin Xu, Nancy Eannetta, Antonio J. Matas, Ryan McQuinn, Steven D. Tanksley, Francisco Camara, Roderic Guigo, Stephane Rombauts, Jeffrey Fawcett, Yves Van de Peer, Dani Zamir, Chunbo Liang, Manuel Spannagl, Heidrun Gundlach, Remy Bruggmann, Klaus Mayer, Zhiqi Jia, Junhong Zhang, Zhibiao Ye, Gerard J. Bishop, Sarah Butcher, Rosa Lopez-Cobollo, Daniel Buchan, Ioannis Filippis, James Abbott, Rekha Dixit, Manju Singh, Archana Singh, Jitendra Kumar Pal, Awadhesh Pandit, Pradeep Kumar Singh, Ajay Kumar Mahato, Vivek Dogra, Kishor Gaikwad, Tilak Raj Sharma, Trilochan Mohapatra, Nagendra Kumar Singh, Mathilde Causse, Christophe Rothan, Thomas Schiex, Celine Noirot, Arnaud Bellec, Christophe Klopp, Corinne Delalande, Helene Berges, Jerome Mariette, Pierre Frasse, Sonia Vautrin, Mohamed Zouine, Alain Latche, Christine Rousseau, Farid Regad, Jean-Claude Pech, Murielle Philippot, Mondher Bouzayen, Pierre Pericard, Sonia Osorio, Asuncion Fernandez del Carmen, Antonio Monforte, Antonio Granell, Rafael Fernandez-Munoz, Mariana Conte, Gabriel Lichtenstein, Fernando Carrari, Gianluca De Bellis, Fabio Fuligni, Clelia Peano, Silvana Grandillo, Pasquale Termolino, Marco Pietrella, Elio Fantini, Giulia Falcone, Alessia Fiore, Giovanni Giuliano, Loredana Lopez, Paolo Facella, Gaetano Perrotta, Loretta Daddiego, Glenn Bryan, Modesto Orozco, Xavier Pastor, David Torrents, Keygene N. V. Marco G. M. van Schriek, Richard M. C. Feron, Jan van Oeveren, Peter de Heer, Lorena daPonte, Saskia Jacobs-Oomen, Mike Cariaso, Marcel Prins, Michiel J. T. van Eijk, Antoine Janssen, Mark J. J. van Haaren, Sung-Hwan Jo, Jungeun Kim, Suk-Yoon Kwon, Sangmi Kim, Dal-Hoe Koo, Sanghyeob Lee, Cheol-Goo Hur, Christopher Clouser, Alain Rico, Asis Hallab, Christiane Gebhardt, Kathrin Klee, Anika Joecker, Jens Warfsmann, Ulrike Goebel, Shingo Kawamura, Kentaro Yano, Jamie D. Sherman, Hiroyuki Fukuoka, Satomi Negoro, Sarita Bhutty, Parul Chowdhury, Debasis Chattopadhyay, Erwin Datema, Sandra Smit, Eliog. W. M. Schijlen, Jose van de Belt, Jan C. van Haarst, Sander A. Peters, Marjo J. van Staveren, Marleen H. C. Henkens, Paul J. W. Mooyman, Thamara Hesselink, Roeland C. H. J. van Ham, Guoyong Jiang, Marcus Droege, Doil Choi, Byung-Cheol Kang, Byung Dong Kim, Minkyu Park, Seungill Kim, Seon-In Yeom, Yong-Hwan Lee, Yang-Do Choi, Guangcun Li, Jianwei Gao, Yongsheng Liu, Shengxiong Huang, Victoria Fernandez-Pedrosa, Carmen Collado, Sheila Zuniga, Guoping Wang, Rebecca Cade, Robert A. Dietrich, Jane Rogers, Sandra Knapp, Zhangjun Fei, Ruth A. White, Theodore W. Thannhauser, James J. Giovannoni, Miguel Angel Botella, Louise Gilbert, Ramon Gonzalez, Jose Luis Goicoechea, Yeisoo Yu, David Kudrna, Kristi Collura, Marina Wissotski, Rod Wing, Heiko Schoof, Blake C. Meyers, Aishwarya Bala Gurazada, Pamela J. Green, Saloni Mathur, Shailendra Vyas, Amolkumar U. Solanke, Rahul Kumar, Vikrant Gupta, Arun K. Sharma, Paramjit Khurana, Jitendra P. Khurana, Akhilesh K. Tyagi, Tamas Dalmay, Irina Mohorianu, Brandon Walts, Srikar Chamala, W. Brad Barbazuk, Jingping Li, Hui Guo, Tae-Ho Lee, Yupeng Wang, Dong Zhang, Andrew H. Paterson, Xiyin Wang, Haibao Tang, Amalia Barone, Maria Luisa Chiusano, Maria Raffaella Ercolano, Nunzio D'Agostino, Miriam Di Filippo, Alessandra Traini, Walter Sanseverino, Luigi Frusciante, Graham B. Seymour, Mounir Elharam, Ying Fu, Axin Hua, Steven Kenton, Jennifer Lewis, Shaoping Lin, Fares Najar, Hongshing Lai, Baifang Qin, Chunmei Qu, Ruihua Shi, Douglas White, James White, Yanbo Xing, Keqin Yang, Jing Yi, Ziyun Yao, Liping Zhou, Bruce A. Roe, Alessandro Vezzi, Michela D'Angelo, Rosanna Zimbello, Riccardo Schiavon, Elisa Caniato, Chiara Rigobello, Davide Campagna, Nicola Vitulo, Giorgio Valle, David R. Nelson, Emanuele De Paoli, Dora Szinay, Hans H. de Jong, Yuling Bai, Richard G. F. Visser, Rene M. Klein Lankhorst, Helen Beasley, Karen McLaren, Christine Nicholson, Claire Riddle, Giulio Gianese

NATURE　485　(7400)　635-641　2012/05

DOI： 10.1038/nature11119 　

ISSN： 0028-0836

eISSN： 1476-4687
Imprinted DNA methylation reprogramming during early mouse embryogenesis at the Gpr1-Zdbf2 locus is linked to long cis-intergenic transcription Peer-reviewed

Hisato Kobayashi, Takayuki Sakurai, Shun Sato, Kazuhiko Nakabayashi, Kenichiro Hata, Tomohiro Kono

FEBS LETTERS　586　(6)　827-833　2012/03

DOI： 10.1016/j.febslet.2012.01.059 　

ISSN： 0014-5793
Establishment of a Lotus japonicus gene tagging population using the exon-targeting endogenous retrotransposon LORE1

Eigo Fukai, Takashi Soyano, Yosuke Umehara, Shinobu Nakayama, Hideki Hirakawa, Satoshi Tabata, Shusei Sato, Makoto Hayashi

PLANT JOURNAL　69　(4)　720-730　2012/02

DOI： 10.1111/j.1365-313X.2011.04826.x 　

ISSN： 0960-7412
LjABCB1, an ATP-binding cassette protein specifically induced in uninfected cells of Lotus japonicus nodules

Kojiro Takanashi, Akifumi Sugiyama, Shusei Sato, Satoshi Tabata, Kazufumi Yazaki

JOURNAL OF PLANT PHYSIOLOGY　169　(3)　322-326　2012/02

DOI： 10.1016/j.jplph.2011.11.008 　

ISSN： 0176-1617
単細胞紅藻チノリモ (Porphyridium purpureum)の葉緑体ゲノム解析. Invited Peer-reviewed

田島直幸, 佐藤修正, 丸山史人, 黒川顕, 太田啓之, 田畑哲之, 関根康介, 森山崇, 佐藤直樹

光合成研究　22　(3)　156-159　2012
Publisher:
ISSN： 1884-2852
The integral membrane protein SEN1 is required for symbiotic nitrogen fixation in Lotus japonicus nodules.

Tsuneo Hakoyama, Kaori Niimi, Takeshi Yamamoto, Sawa Isobe, Shusei Sato, Yasukazu Nakamura, Satoshi Tabata, Hirotaka Kumagai, Yosuke Umehara, Katja Brossuleit, Thomas R Petersen, Niels Sandal, Jens Stougaard, Michael K Udvardi, Masanori Tamaoki, Masayoshi Kawaguchi, Hiroshi Kouchi, Norio Suganuma

Plant & cell physiology　53　(1)　225-36　2012/01

DOI： 10.1093/pcp/pcr167 　

ISSN： 0032-0781
Integration of Linkage and Chromosome Maps of Red Clover (Trifolium pratense L.)

R. Kataoka, M. Hara, S. Kato, S. Isobe, S. Sato, S. Tabata, N. Ohmido

CYTOGENETIC AND GENOME RESEARCH　137　(1)　60-69　2012

DOI： 10.1159/000339509 　

ISSN： 1424-8581
Comparative Analyses in Lotus: The Cytogenetic Map of Lotus uliginosus Schkuhr

J. Ferreira, S. Mendes, M. Dall'Agnol, N. Sandal, S. Sato, A. Pedrosa-Harand

CYTOGENETIC AND GENOME RESEARCH　137　(1)　42-49　2012

DOI： 10.1159/000339617 　

ISSN： 1424-8581
Upgraded genomic information of Jatropha curcas L.

Hideki Hirakawa, Suguru Tsuchimoto, Hiroe Sakai, Shinobu Nakayama, Tsunakazu Fujishiro, Yoshie Kishida, Mitsuyo Kohara, Akiko Watanabe, Manabu Yamada, Tomoyuki Aizu, Atsushi Toyoda, Asao Fujiyama, Satoshi Tabata, Kiichi Fukui, Shusei Sato

PLANT BIOTECHNOLOGY　29　(2)　123-130　2012

DOI： 10.5511/plantbiotechnology.12.0515a 　

ISSN： 1342-4580
Complete genome sequence of Bradyrhizobium sp. S23321: insights into symbiosis evolution in soil oligotrophs.

Takashi Okubo, Takahiro Tsukui, Hiroko Maita, Shinobu Okamoto, Kenshiro Oshima, Takatomo Fujisawa, Akihiro Saito, Hiroyuki Futamata, Reiko Hattori, Yumi Shimomura, Shin Haruta, Sho Morimoto, Yong Wang, Yoriko Sakai, Masahira Hattori, Shin-Ichi Aizawa, Kenji V P Nagashima, Sachiko Masuda, Tsutomu Hattori, Akifumi Yamashita, Zhihua Bao, Masahito Hayatsu, Hiromi Kajiya-Kanegae, Ikuo Yoshinaga, Kazunori Sakamoto, Koki Toyota, Mitsuteru Nakao, Mitsuyo Kohara, Mizue Anda, Rieko Niwa, Park Jung-Hwan, Reiko Sameshima-Saito, Shin-Ichi Tokuda, Sumiko Yamamoto, Syuji Yamamoto, Tadashi Yokoyama, Tomoko Akutsu, Yasukazu Nakamura, Yuka Nakahira-Yanaka, Yuko Takada Hoshino, Hideki Hirakawa, Hisayuki Mitsui, Kimihiro Terasawa, Manabu Itakura, Shusei Sato, Wakako Ikeda-Ohtsubo, Natsuko Sakakura, Eli Kaminuma, Kiwamu Minamisawa

Microbes and environments　27　(3)　306-15　2012

DOI： 10.1264/jsme2.ME11321 　

ISSN： 1342-6311

eISSN： 1347-4405
Mapping of Micro-Tom BAC-End Sequences to the Reference Tomato Genome Reveals Possible Genome Rearrangements and Polymorphisms. International-journal

Erika Asamizu, Kenta Shirasawa, Hideki Hirakawa, Shusei Sato, Satoshi Tabata, Kentaro Yano, Tohru Ariizumi, Daisuke Shibata, Hiroshi Ezura

International journal of plant genomics　2012　437026-437026　2012

DOI： 10.1155/2012/437026 　

ISSN： 1687-5370
QTL Mapping for Bulb Pigmentation in F-2 Population between Bulb Onion and Shallot

H. Tsukazaki, S. Yaguchi, K. Yamashita, A. Kojima, T. Wako, S. Sato, M. Shigyo

VI INTERNATIONAL SYMPOSIUM ON EDIBLE ALLIACEAE　969　85-89　2012

ISSN： 0567-7572
Complete Genome Sequence of the Soybean Symbiont Bradyrhizobium japonicum Strain USDA6(T)

Takakazu Kaneko, Hiroko Maita, Hideki Hirakawa, Nobukazu Uchiike, Kiwamu Minamisawa, Akiko Watanabe, Shusei Sato

GENES　2　(4)　763-787　2011/12

DOI： 10.3390/genes2040763 　

ISSN： 2073-4425
Down-regulation of UDP-arabinopyranose mutase reduces the proportion of arabinofuranose present in rice cell walls Peer-reviewed

Tomoyuki Konishi, Tsutomu Aohara, Tomohiro Igasaki, Noriko Hayashi, Yasumasa Miyazaki, Akira Takahashi, Hirohiko Hirochika, Hiroaki Iwai, Shinobu Satoh, Tadashi Ishii

PHYTOCHEMISTRY　72　(16)　1962-1968　2011/11

DOI： 10.1016/j.phytochem.2011.07.012 　

ISSN： 0031-9422
The genome of the mesopolyploid crop species Brassica rapa

Xiaowu Wang, Hanzhong Wang, Jun Wang, Rifei Sun, Jian Wu, Shengyi Liu, Yinqi Bai, Jeong-Hwan Mun, Ian Bancroft, Feng Cheng, Sanwen Huang, Xixiang Li, Wei Hua, Junyi Wang, Xiyin Wang, Michael Freeling, J. Chris Pires, Andrew H. Paterson, Boulos Chalhoub, Bo Wang, Alice Hayward, Andrew G. Sharpe, Beom-Seok Park, Bernd Weisshaar, Binghang Liu, Bo Li, Bo Liu, Chaobo Tong, Chi Song, Christopher Duran, Chunfang Peng, Chunyu Geng, Chushin Koh, Chuyu Lin, David Edwards, Desheng Mu, Di Shen, Eleni Soumpourou, Fei Li, Fiona Fraser, Gavin Conant, Gilles Lassalle, Graham J. King, Guusje Bonnema, Haibao Tang, Haiping Wang, Harry Belcram, Heling Zhou, Hideki Hirakawa, Hiroshi Abe, Hui Guo, Hui Wang, Huizhe Jin, Isobel A. P. Parkin, Jacqueline Batley, Jeong-Sun Kim, Jeremy Just, Jianwen Li, Jiaohui Xu, Jie Deng, Jin A. Kim, Jingping Li, Jingyin Yu, Jinling Meng, Jinpeng Wang, Jiumeng Min, Julie Poulain, Jun Wang, Katsunori Hatakeyama, Kui Wu, Li Wang, Lu Fang, Martin Trick, Matthew G. Links, Meixia Zhao, Mina Jin, Nirala Ramchiary, Nizar Drou, Paul J. Berkman, Qingle Cai, Quanfei Huang, Ruiqiang Li, Satoshi Tabata, Shifeng Cheng, Shu Zhang, Shujiang Zhang, Shunmou Huang, Shusei Sato, Silong Sun, Soo-Jin Kwon, Su-Ryun Choi, Tae-Ho Lee, Wei Fan, Xiang Zhao, Xu Tan, Xun Xu, Yan Wang, Yang Qiu, Ye Yin, Yingrui Li, Yongchen Du, Yongcui Liao, Yongpyo Lim, Yoshihiro Narusaka, Yupeng Wang, Zhenyi Wang, Zhenyu Li, Zhiwen Wang, Zhiyong Xiong, Zhonghua Zhang

NATURE GENETICS　43　(10)　1035-U157　2011/10

DOI： 10.1038/ng.919 　

ISSN： 1061-4036
Genomic Structure of the Cyanobacterium Synechocystis sp PCC 6803 Strain GT-S

Naoyuki Tajima, Shusei Sato, Fumito Maruyama, Takakazu Kaneko, Naobumi V. Sasaki, Ken Kurokawa, Hiroyuki Ohta, Yu Kanesaki, Hirofumi Yoshikawa, Satoshi Tabata, Masahiko Ikeuchi, Naoki Sato

DNA RESEARCH　18　(5)　393-399　2011/10

DOI： 10.1093/dnares/dsr026 　

ISSN： 1340-2838
Genomic clustering of cyanogenic glucoside biosynthetic genes aids their identification in Lotus japonicus and suggests the repeated evolution of this chemical defence pathway

Adam M. Takos, Camilla Knudsen, Daniela Lai, Rubini Kannangara, Lisbeth Mikkelsen, Mohammed S. Motawia, Carl E. Olsen, Shusei Sato, Satoshi Tabata, Kirsten Jorgensen, Birger L. Moller, Fred Rook

PLANT JOURNAL　68　(2)　273-286　2011/10

DOI： 10.1111/j.1365-313X.2011.04685.x 　

ISSN： 0960-7412
Lotus japonicus nodulation is photomorphogenetically controlled by sensing the red/far red (R/FR) ratio through jasmonic acid (JA) signaling

Akihiro Suzuki, Lalith Suriyagoda, Tamaki Shigeyama, Akiyoshi Tominaga, Masayo Sasaki, Yoshimi Hiratsuka, Aya Yoshinaga, Susumu Arima, Sakae Agarie, Tatsuya Sakai, Sayaka Inada, Yusuke Jikumaru, Yuji Kamiya, Toshiki Uchiumi, Mikiko Abe, Masatsugu Hashiguchi, Ryo Akashi, Shusei Sato, Takakazu Kaneko, Satoshi Tabata, Ann M. Hirsch

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA　108　(40)　16837-16842　2011/10

DOI： 10.1073/pnas.1105892108 　

ISSN： 0027-8424
Legumes as a model plant family

Cannon, S.B., Sato, S., Tabata, S., Young, N.D., May, G.D.

Biology and Breeding of Food Legumes　348-361　2011/09/27
Publisher: Biology and Breeding of Food Legumes
Spatially selective hormonal control of RAP2.6L and ANAC071 transcription factors involved in tissue reunion in Arabidopsis Peer-reviewed

Masashi Asahina, Katsuya Azuma, Weerasak Pitaksaringkarn, Takashi Yamazaki, Nobutaka Mitsuda, Masaru Ohme-Takagi, Shinjiro Yamaguchi, Yuji Kamiya, Kiyotaka Okada, Takeshi Nishimura, Tomokazu Koshiba, Takao Yokota, Hiroshi Kamada, Shinobu Satoh

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA　108　(38)　16128-16132　2011/09

DOI： 10.1073/pnas.1110443108 　

ISSN： 0027-8424
An EST-SSR Linkage Map of Raphanus sativus and Comparative Genomics of the Brassicaceae

Kenta Shirasawa, Maki Oyama, Hideki Hirakawa, Shusei Sato, Satoshi Tabata, Takashi Fujioka, Chiaki Kimizuka-Takagi, Shigemi Sasamoto, Akiko Watanabe, Midori Kato, Yoshie Kishida, Mitsuyo Kohara, Chika Takahashi, Hisano Tsuruoka, Tsuyuko Wada, Takako Sakai, Sachiko Isobe

DNA RESEARCH　18　(4)　221-232　2011/08

DOI： 10.1093/dnares/dsr013 　

ISSN： 1340-2838

eISSN： 1756-1663
Peroxiredoxins and NADPH-Dependent Thioredoxin Systems in the Model Legume Lotus japonicus

Alejandro Tovar-Mendez, Manuel A. Matamoros, Pilar Bustos-Sanmamed, Karl-Josef Dietz, Francisco Javier Cejudo, Nicolas Rouhier, Shusei Sato, Satoshi Tabata, Manuel Becana

PLANT PHYSIOLOGY　156　(3)　1535-1547　2011/07

DOI： 10.1104/pp.111.177196 　

ISSN： 0032-0889
Activation of a Lotus japonicus Subtilase Gene During Arbuscular Mycorrhiza Is Dependent on the Common Symbiosis Genes and Two cis-Active Promoter Regions

Naoya Takeda, Kristina Haage, Shusei Sato, Satoshi Tabata, Martin Parniske

MOLECULAR PLANT-MICROBE INTERACTIONS　24　(6)　662-670　2011/06

DOI： 10.1094/MPMI-09-10-0220 　

ISSN： 0894-0282
A Map-Based Cloning Strategy Employing a Residual Heterozygous Line Reveals that the GIGANTEA Gene Is Involved in Soybean Maturity and Flowering

Satoshi Watanabe, Zhengjun Xia, Rumiko Hideshima, Yasutaka Tsubokura, Shusei Sato, Naoki Yamanaka, Ryoji Takahashi, Toyoaki Anai, Satoshi Tabata, Keisuke Kitamura, Kyuya Harada

GENETICS　188　(2)　395-U260　2011/06

DOI： 10.1534/genetics.110.125062 　

ISSN： 0016-6731
Isolation and Genetic Characterization of Aurantimonas and Methylobacterium Strains from Stems of Hypernodulated Soybeans

Mizue Anda, Seishi Ikeda, Shima Eda, Takashi Okubo, Shusei Sato, Satoshi Tabata, Hisayuki Mitsui, Kiwamu Minamisawa

MICROBES AND ENVIRONMENTS　26　(2)　172-180　2011/06

DOI： 10.1264/jsme2.ME10203 　

ISSN： 1342-6311
Identification of Mesorhizobium loti Genes Relevant to Symbiosis by Using Signature-Tagged Mutants

Naoganchaolu Borjigin, Keisuke Furukawa, Yoshikazu Shimoda, Satoshi Tabata, Shusei Sato, Shima Eda, Kiwamu Minamisawa, Hisayuki Mitsui

MICROBES AND ENVIRONMENTS　26　(2)　165-171　2011/06

DOI： 10.1264/jsme2.ME10213 　

ISSN： 1342-6311
Expression and functions of myo-inositol monophosphatase family genes in seed development of Arabidopsis Peer-reviewed

Yuko Sato, Katsumi Yazawa, Seiji Yoshida, Masanori Tamaoki, Nobuyoshi Nakajima, Hiroaki Iwai, Tadashi Ishii, Shinobu Satoh

JOURNAL OF PLANT RESEARCH　124　(3)　385-394　2011/05

DOI： 10.1007/s10265-010-0381-y 　

ISSN： 0918-9440
The Clavata2 genes of pea and Lotus japonicus affect autoregulation of nodulation

Lene Krusell, Naoto Sato, Izumi Fukuhara, Bjorn E. V. Koch, Christina Grossmann, Satoru Okamoto, Erika Oka-Kira, Yoko Otsubo, Gregoire Aubert, Tomomi Nakagawa, Shusei Sato, Satoshi Tabata, Gerard Duc, Martin Parniske, Trevor L. Wang, Masayoshi Kawaguchi, Jens Stougaard

PLANT JOURNAL　65　(6)　861-871　2011/03

DOI： 10.1111/j.1365-313X.2010.04474.x 　

ISSN： 0960-7412

eISSN： 1365-313X
Autoregulation of Nodulation Interferes with Impacts of Nitrogen Fertilization Levels on the Leaf-Associated Bacterial Community in Soybeans

Seishi Ikeda, Mizue Anda, Shoko Inaba, Shima Eda, Shusei Sato, Kazuhiro Sasaki, Satoshi Tabata, Hisayuki Mitsui, Tadashi Sato, Takuro Shinano, Kiwamu Minamisawa

APPLIED AND ENVIRONMENTAL MICROBIOLOGY　77　(6)　1973-1980　2011/03

DOI： 10.1128/AEM.02567-10 　

ISSN： 0099-2240
Sequence Analysis of the Genome of an Oil-Bearing Tree, Jatropha curcas L.

Shusei Sato, Hideki Hirakawa, Sachiko Isobe, Elgo Fukai, Akiko Watanabe, Midori Kato, Kumiko Kawashima, Chiharu Minami, Akiko Muraki, Naomi Nakazaki, Chika Takahashi, Shinobu Nakayama, Yoshie Kishida, Mitsuyo Kohara, Manabu Yamada, Hisano Tsuruoka, Shigemi Sasamoto, Satoshi Tabata, Tomoyuki Aizu, Atsushi Toyoda, Tadasu Shin-i, Yohei Minakuchi, Yuji Kohara, Asao Fujiyama, Suguru Tsuchimoto, Shin'ichiro Kajiyama, Eri Makigano, Nobuko Ohmido, Nakako Shibagaki, Joyce A. Cartagena, Naoki Wada, Tsutomu Kohinata, Alipour Atefeh, Shota Yuasa, Sachihiro Matsunaga, Kiichi Fukui

DNA RESEARCH　18　(1)　65-76　2011/02

DOI： 10.1093/dnares/dsq030 　

ISSN： 1340-2838

eISSN： 1756-1663
Seasonal fluctuation of organic and inorganic components in xylem sap of populus nigra Peer-reviewed

Jun Furukawa, Yuta Abe, Hiroaki Mizuno, Kaoru Matsuki, Keiko Sagawa, Mikiko Kojima, Hitoshi Sakakibara, Hiroaki Iwai, Shinobu Satoh

Plant Root　5　56-62　2011

DOI： 10.3117/plantroot.5.56 　

ISSN： 1881-6754
Lotus

Shusei Sato, Satoshi Tabata

Wild Crop Relatives: Genomic and Breeding Resources: Legume Crops and Forages　141-151　2011
Publisher: Springer-Verlag Berlin Heidelberg
DOI： 10.1007/978-3-642-14387-8_8 　
Regulation of nonsymbiotic and truncated hemoglobin genes of Lotus japonicus in plant organs and in response to nitric oxide and hormones

Pilar Bustos-Sanmamed, Alejandro Tovar-Mendez, Martin Crespi, Shusei Sato, Satoshi Tabata, Manuel Becana

NEW PHYTOLOGIST　189　(3)　765-776　2011

DOI： 10.1111/j.1469-8137.2010.03527.x 　

ISSN： 0028-646X
Survey of the genetic information carried in the genome of Eucalyptus camaldulensis

Hideki Hirakawa, Yasukazu Nakamura, Takakazu Kaneko, Sachiko Isobe, Hiroe Sakai, Tomohiko Kato, Takashi Hibino, Shigemi Sasamoto, Akiko Watanabe, Manabu Yamada, Shinobu Nakayama, Tsunakazu Fujishiro, Yoshie Kishida, Mitsuyo Kohara, Satoshi Tabata, Shusei Sato

PLANT BIOTECHNOLOGY　28　(5)　471-480　2011

DOI： 10.5511/plantbiotechnology.11.1027b 　

ISSN： 1342-4580
SNP discovery and linkage map construction in cultivated tomato. International-journal

Kenta Shirasawa, Sachiko Isobe, Hideki Hirakawa, Erika Asamizu, Hiroyuki Fukuoka, Daniel Just, Christophe Rothan, Shigemi Sasamoto, Tsunakazu Fujishiro, Yoshie Kishida, Mitsuyo Kohara, Hisano Tsuruoka, Tsuyuko Wada, Yasukazu Nakamura, Shusei Sato, Satoshi Tabata

DNA research : an international journal for rapid publication of reports on genes and genomes　17　(6)　381-91　2010/12

DOI： 10.1093/dnares/dsq024 　

ISSN： 1340-2838
The receptor-like kinase KLAVIER mediates systemic regulation of nodulation and non-symbiotic shoot development in Lotus japonicus. International-journal

Hikota Miyazawa, Erika Oka-Kira, Naoto Sato, Hirokazu Takahashi, Guo-Jiang Wu, Shusei Sato, Masaki Hayashi, Shigeyuki Betsuyaku, Mikio Nakazono, Satoshi Tabata, Kyuya Harada, Shinichiro Sawa, Hiroo Fukuda, Masayoshi Kawaguchi

Development (Cambridge, England)　137　(24)　4317-25　2010/12

DOI： 10.1242/dev.058891 　

ISSN： 0950-1991
Two Coordinately Regulated Homologs of FLOWERING LOCUS T Are Involved in the Control of Photoperiodic Flowering in Soybean

Fanjiang Kong, Baohui Liu, Zhengjun Xia, Shusei Sato, Bo Min Kim, Satoshi Watanabe, Tetsuya Yamada, Satoshi Tabata, Akira Kanazawa, Kyuya Harada, Jun Abe

PLANT PHYSIOLOGY　154　(3)　1220-1231　2010/11

DOI： 10.1104/pp.110.160796 　

ISSN： 0032-0889
3-Phosphoglycerate dehydrogenase in Mesorhizobioum loti is essential for maintaining symbiotic nitrogen fixation of Lotus japonicus root nodules

Nanthipak Thapanapongworakul, Mika Nomura, Tan Van Dao, Yoshikazu Shimoda, Shusei Sato, Satoshi Tabata, Shigeyuki Tajima

PLANT AND SOIL　336　(1-2)　233-240　2010/11

DOI： 10.1007/s11104-010-0471-6 　

ISSN： 0032-079X
Proteome Analysis of Pod and Seed Development in the Model Legume Lotus japonicus

Gitte Nautrup-Pedersen, Svend Dam, Brian S. Laursen, Astrid L. Siegumfeldt, Kasper Nielsen, Nicolas Goffard, Hans Henrik Staerfeldt, Carsten Friis, Shusei Sato, Satoshi Tabata, Andrea Lorentzen, Peter Roepstorff, Jens Stougaard

JOURNAL OF PROTEOME RESEARCH　9　(11)　5715-5726　2010/11

DOI： 10.1021/pr100511u 　

ISSN： 1535-3893

eISSN： 1535-3907
Genomewide Characterization of the Light-Responsive and Clock-Controlled Output Pathways in Lotus japonicus with Special Emphasis of its Uniqueness

Natsuko Ono, Kai Ishida, Takafumi Yamashino, Hanayo Nakanishi, Shusei Sato, Satoshi Tabata, Takeshi Mizuno

PLANT AND CELL PHYSIOLOGY　51　(10)　1800-1814　2010/10

DOI： 10.1093/pcp/pcq140 　

ISSN： 0032-0781

eISSN： 1471-9053
A Suite of Lotus japonicus Starch Mutants Reveals Both Conserved and Novel Features of Starch Metabolism

Cecile Vriet, Tracey Welham, Andreas Brachmann, Marilyn Pike, Jodie Pike, Jillian Perry, Martin Parniske, Shusei Sato, Satoshi Tabata, Alison M. Smith, Trevor L. Wang

PLANT PHYSIOLOGY　154　(2)　643-655　2010/10

DOI： 10.1104/pp.110.161844 　

ISSN： 0032-0889
Community- and Genome-Based Views of Plant-Associated Bacteria: Plant-Bacterial Interactions in Soybean and Rice

Seishi Ikeda, Takashi Okubo, Mizue Anda, Hideo Nakashita, Michiko Yasuda, Shusei Sato, Takakazu Kaneko, Satoshi Tabata, Shima Eda, Ayumi Momiyama, Kimihiro Terasawa, Hisayuki Mitsui, Kiwamu Minamisawa

PLANT AND CELL PHYSIOLOGY　51　(9)　1398-1410　2010/09

DOI： 10.1093/pcp/pcq119 　

ISSN： 0032-0781

eISSN： 1471-9053
An interspecific linkage map of SSR and intronic polymorphism markers in tomato. International-journal

Kenta Shirasawa, Erika Asamizu, Hiroyuki Fukuoka, Akio Ohyama, Shusei Sato, Yasukazu Nakamura, Satoshi Tabata, Shigemi Sasamoto, Tsuyuko Wada, Yoshie Kishida, Hisano Tsuruoka, Tsunakazu Fujishiro, Manabu Yamada, Sachiko Isobe

TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik　121　(4)　731-9　2010/08

DOI： 10.1007/s00122-010-1344-3 　

ISSN： 0040-5752
Differential protein profiles of Bradyrhizobium japonicum USDA110 bacteroid during soybean nodule development

Mika Nomura, Hatthaya Arunothayanan, Tan Van Dao, Hoa Thi-Phuong Le, Takakazu Kaneko, Shusei Sato, Satoshi Tabata, Shigeyuki Tajima

SOIL SCIENCE AND PLANT NUTRITION　56　(4)　579-590　2010/08

DOI： 10.1111/j.1747-0765.2010.00500.x 　

ISSN： 0038-0768

eISSN： 1747-0765
NENA, a Lotus japonicus Homolog of Sec13, Is Required for Rhizodermal Infection by Arbuscular Mycorrhiza Fungi and Rhizobia but Dispensable for Cortical Endosymbiotic Development

Martin Groth, Naoya Takeda, Jillian Perry, Hisaki Uchida, Stephan Draexl, Andreas Brachmann, Shusei Sato, Satoshi Tabata, Masayoshi Kawaguchi, Trevor L. Wang, Martin Parniske

PLANT CELL　22　(7)　2509-2526　2010/07

DOI： 10.1105/tpc.109.069807 　

ISSN： 1040-4651
Structural analyses of the genomes in legumes

Shusei Sato, Sachiko Isobe, Satoshi Tabata

CURRENT OPINION IN PLANT BIOLOGY　13　(2)　146-152　2010/04

DOI： 10.1016/j.pbi.2009.12.007 　

ISSN： 1369-5266

eISSN： 1879-0356
Evolution and Regulation of the Lotus japonicus LysM Receptor Gene Family

Gitte Vestergaard Lohmann, Yoshikazu Shimoda, Mette Wibroe Nielsen, Frank Gronlund Jorgensen, Christina Grossmann, Niels Sandal, Kirsten Sorensen, Soren Thirup, Lene Heegaard Madsen, Satoshi Tabata, Shusei Sato, Jens Stougaard, Simona Radutoiu

MOLECULAR PLANT-MICROBE INTERACTIONS　23　(4)　510-521　2010/04

DOI： 10.1094/MPMI-23-4-0510 　

ISSN： 0894-0282
Derepression of the Plant Chromovirus LORE1 Induces Germline Transposition in Regenerated Plants

Eigo Fukai, Yosuke Umehara, Shusei Sato, Makoto Endo, Hiroshi Kouchi, Makoto Hayashi, Jens Stougaard, Hirohiko Hirochika

PLOS GENETICS　6　(3)　2010/03

DOI： 10.1371/journal.pgen.1000868 　

ISSN： 1553-7390
Community shifts of soybean stem-associated bacteria responding to different nodulation phenotypes and N levels

Seishi Ikeda, Takashi Okubo, Takakazu Kaneko, Shoko Inaba, Tomiya Maekawa, Shima Eda, Shusei Sato, Satoshi Tabata, Hisayuki Mitsui, Kiwamu Minamisawa

ISME JOURNAL　4　(3)　315-326　2010/03

DOI： 10.1038/ismej.2009.119 　

ISSN： 1751-7362
The REDUCED LEAFLET Genes Encode Key Components of the trans-Acting Small Interfering RNA Pathway and Regulate Compound Leaf and Flower Development in Lotus japonicus

Jun Yan, Xuefei Cai, Jianghong Luo, Shusei Sato, Qunyi Jiang, Jun Yang, Xiangling Cao, Xiaohe Hu, Satoshi Tabata, Peter M. Gresshoff, Da Luo

PLANT PHYSIOLOGY　152　(2)　797-807　2010/02

DOI： 10.1104/pp.109.140947 　

ISSN： 0032-0889
Integration of cytogenetic and genetic linkage maps of Lotus japonicus, a model plant for legumes

Nobuko Ohmido, Akiko Ishimaru, Seiji Kato, Shusei Sato, Satoshi Tabata, Kiichi Fukui

CHROMOSOME RESEARCH　18　(2)　287-299　2010/02

DOI： 10.1007/s10577-009-9103-5 　

ISSN： 0967-3849

eISSN： 1573-6849
Identification and Functional Analysis of Type III Effector Proteins in Mesorhizobium loti

Shin Okazaki, Saori Okabe, Miku Higashi, Yoshikazu Shimoda, Shusei Sato, Satoshi Tabata, Masatsugu Hashiguchi, Ryo Akashi, Michael Goettfert, Kazuhiko Saeki

MOLECULAR PLANT-MICROBE INTERACTIONS　23　(2)　223-234　2010/02

DOI： 10.1094/MPMI-23-2-0223 　

ISSN： 0894-0282
Complete genomic structure of the cultivated rice endophyte Azospirillum sp. B510. International-journal

Takakazu Kaneko, Kiwamu Minamisawa, Tsuyoshi Isawa, Hiroki Nakatsukasa, Hisayuki Mitsui, Yasuyuki Kawaharada, Yasukazu Nakamura, Akiko Watanabe, Kumiko Kawashima, Akiko Ono, Yoshimi Shimizu, Chika Takahashi, Chiharu Minami, Tsunakazu Fujishiro, Mitsuyo Kohara, Midori Katoh, Naomi Nakazaki, Shinobu Nakayama, Manabu Yamada, Satoshi Tabata, Shusei Sato

DNA research : an international journal for rapid publication of reports on genes and genomes　17　(1)　37-50　2010/02

DOI： 10.1093/dnares/dsp026 　

ISSN： 1340-2838
Purification and Biochemical Characterization of Recombinant Rice UDP-Arabinopyranose Mutase Generated in Insect Cells Peer-reviewed

Tomoyuki Konishi, Yasumasa Miyazaki, Seiyei Yamakawa, Hiroaki Iwai, Shinobu Satoh, Tadashi Ishii

BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY　74　(1)　191-194　2010/01

DOI： 10.1271/bbb.90619 　

ISSN： 0916-8451

eISSN： 1347-6947
Large-scale analysis of full-length cDNAs from the tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for the Solanaceae genomics Peer-reviewed

Koh Aoki, Kentaro Yano, Ayako Suzuki, Shingo Kawamura, Nozomu Sakurai, Kunihiro Suda, Atsushi Kurabayashi, Tatsuya Suzuki, Taneaki Tsugane, Manabu Watanabe, Kazuhide Ooga, Maiko Torii, Takanori Narita, Tadasu Shin-i, Yuji Kohara, Naoki Yamamoto, Hideki Takahashi, Yuichiro Watanabe, Mayumi Egusa, Motoichiro Kodama, Yuki Ichinose, Mari Kikuchi, Sumire Fukushima, Akiko Okabe, Tsutomu Arie, Yuko Sato, Katsumi Yazawa, Shinobu Satoh, Toshikazu Omura, Hiroshi Ezura, Daisuke Shibata

BMC Genomics　11　(1)　210-210　2010
Publisher: Springer Science and Business Media LLC
DOI： 10.1186/1471-2164-11-210 　

ISSN： 1471-2164
ダイズ根粒菌Bradyrhizobium japonicum USDA122株とUSDA110株のゲノム比較 : USDA122株特異的遺伝子の探索(2010年度大会一般講演要旨)

津久井隆裕, 金子貴一, 佐藤修正, 山田学, 板倉学, 三井久幸, 江田志磨, 南澤究

土と微生物　64　(2)　142-142　2010
Publisher: 日本土壌微生物学会
DOI： 10.18946/jssm.64.2_142_2 　
Characterization of a Fix- mutant, Ljsym104 of Lotus japonicus that shows impaired nitrogen fixation activity

Yamaya, H, Hakoyama, T, Kouchi, H, Sato, S, Shakhawat MH, Shibata,S, Hase, Y, Tanaka, A, Kawaguchi, M, Tabata, S, Hayashi, M, Umehara, Y

1st Asian Conference on Plant-Microbe Symbiosis and Nitrogen Fixation　136　2010
CyanoBase: the cyanobacteria genome database update 2010. International-journal

Mitsuteru Nakao, Shinobu Okamoto, Mitsuyo Kohara, Tsunakazu Fujishiro, Takatomo Fujisawa, Shusei Sato, Satoshi Tabata, Takakazu Kaneko, Yasukazu Nakamura

Nucleic acids research　38　(Database issue)　D379-81　2010/01

DOI： 10.1093/nar/gkp915 　

ISSN： 0305-1048
NAD(+)-malic enzyme affects nitrogenase activity of Mesorhizobium loti bacteroids in Lotus japonicus nodules

Nanthipak Thapanapongworakul, Mika Nomura, Yoshikazu Shimoda, Shusei Sato, Satoshi Tabata, Shigeyuki Tajima

PLANT BIOTECHNOLOGY　27　(4)　311-316　2010

DOI： 10.5511/plantbiotechnology.27.311 　

ISSN： 1342-4580
Host plant genome overcomes the lack of a bacterial gene for symbiotic nitrogen fixation. International-journal

Tsuneo Hakoyama, Kaori Niimi, Hirokazu Watanabe, Ryohei Tabata, Junichi Matsubara, Shusei Sato, Yasukazu Nakamura, Satoshi Tabata, Li Jichun, Tsuyoshi Matsumoto, Kazuyuki Tatsumi, Mika Nomura, Shigeyuki Tajima, Masumi Ishizaka, Koji Yano, Haruko Imaizumi-Anraku, Masayoshi Kawaguchi, Hiroshi Kouchi, Norio Suganuma

Nature　462　(7272)　514-7　2009/11/26

DOI： 10.1038/nature08594 　

ISSN： 0028-0836
Identification of Arabidopsis subtilisin-like serine protease specifically expressed in root stele by gene trapping

Takeshi Kuroha, Asako Okuda, Masahiro Arai, Yuta Komatsu, Shusei Sato, Tomohiko Kato, Satoshi Tabata, Shinobu Satoh

PHYSIOLOGIA PLANTARUM　137　(3)　281-288　2009/11

DOI： 10.1111/j.1399-3054.2009.01281.x 　

ISSN： 0031-9317
Development of a bacterial cell enrichment method and its application to the community analysis in soybean stems. International-journal

Seishi Ikeda, Takakazu Kaneko, Takashi Okubo, Lynn E E Rallos, Shima Eda, Hisayuki Mitsui, Shusei Sato, Yasukazu Nakamura, Satoshi Tabata, Kiwamu Minamisawa

Microbial ecology　58　(4)　703-14　2009/11

DOI： 10.1007/s00248-009-9566-0 　

ISSN： 0095-3628
Conservation of Lotus and Arabidopsis Basic Helix-Loop-Helix Proteins Reveals New Players in Root Hair Development

Bogumil Karas, Lisa Amyot, Christopher Johansen, Shusei Sato, Satoshi Tabata, Masayoshi Kawaguchi, Krzysztof Szczyglowski

PLANT PHYSIOLOGY　151　(3)　1175-1185　2009/11

DOI： 10.1104/pp.109.143867 　

ISSN： 0032-0889
CERBERUS, a novel U-box protein containing WD-40 repeats, is required for formation of the infection thread and nodule development in the legume-Rhizobium symbiosis

Koji Yano, Satoshi Shibata, Wen-Li Chen, Shusei Sato, Takakazu Kaneko, Anna Jurkiewicz, Niels Sandal, Mari Banba, Haruko Imaizumi-Anraku, Tomoko Kojima, Ryo Ohtomo, Krzysztof Szczyglowski, Jens Stougaard, Satoshi Tabata, Makoto Hayashi, Hiroshi Kouchi, Yosuke Umehara

PLANT JOURNAL　60　(1)　168-180　2009/10

DOI： 10.1111/j.1365-313X.2009.03943.x 　

ISSN： 0960-7412
ダイズ開花期関連遺伝子座FT2のマップベースクローニング

11　(2)　84　2009/09

ISSN： 1344-7629
Map-Based Cloning of the Gene Associated With the Soybean Maturity Locus E3

Satoshi Watanabe, Rumiko Hideshima, Zhengjun Xia, Yasutaka Tsubokura, Shusei Sato, Yumi Nakamoto, Naoki Yamanaka, Ryoji Takahashi, Masao Ishimoto, Toyoaki Anai, Satoshi Tabata, Kyuya Harada

GENETICS　182　(4)　1251-1262　2009/08

DOI： 10.1534/genetics.108.098772 　

ISSN： 0016-6731
High-density Integrated Linkage Map Based on SSR Markers in Soybean

Tae-Young Hwang, Takashi Sayama, Masakazu Takahashi, Yoshitake Takada, Yumi Nakamoto, Hideyuki Funatsuki, Hiroshi Hisano, Shigemi Sasamoto, Shusei Sato, Satoshi Tabata, Izumi Kono, Masako Hoshi, Masayoshi Hanawa, Chizuru Yano, Zhengjun Xia, Kyuya Harada, Keisuke Kitamura, Masao Ishimoto

DNA RESEARCH　16　(4)　213-225　2009/08

DOI： 10.1093/dnares/dsp010 　

ISSN： 1340-2838
A cytosolic invertase is required for normal growth and cell development in the model legume, Lotus japonicus

Tracey Welham, Jodie Pike, Irmtraud Horst, Emmanouil Flemetakis, Panagiotis Katinakis, Takakazu Kaneko, Shusei Sato, Satoshi Tabata, Jillian Perry, Martin Parniske, Trevor L. Wang

JOURNAL OF EXPERIMENTAL BOTANY　60　(12)　3353-3365　2009/08

DOI： 10.1093/jxb/erp169 　

ISSN： 0022-0957
Dissection of Symbiosis and Organ Development by Integrated Transcriptome Analysis of Lotus japonicus Mutant and Wild-Type Plants

Niels Hogslund, Simona Radutoiu, Lene Krusell, Vera Voroshilova, Matthew A. Hannah, Nicolas Goffard, Diego H. Sanchez, Felix Lippold, Thomas Ott, Shusei Sato, Satoshi Tabata, Poul Liboriussen, Gitte V. Lohmann, Leif Schauser, Georg F. Weiller, Michael K. Udvardi, Jens Stougaard

PLOS ONE　4　(8)　2009/08

DOI： 10.1371/journal.pone.0006556 　

ISSN： 1932-6203
Ethylene and salicylic acid control glutathione biosynthesis in ozone-exposed Arabidopsis thaliana. International-journal Peer-reviewed

Seiji Yoshida, Masanori Tamaoki, Motohide Ioki, Daisuke Ogawa, Yuko Sato, Mitsuko Aono, Akihiro Kubo, Shoko Saji, Hikaru Saji, Shinobu Satoh, Nobuyoshi Nakajima

Physiologia plantarum　136　(3)　284-98　2009/07

DOI： 10.1111/j.1399-3054.2009.01220.x 　

ISSN： 0031-9317

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Ozone produces reactive oxygen species and induces the synthesis of phytohormones, including ethylene and salicylic acid. These phytohormones act as signal molecules that enhance cell death in response to ozone exposure. However, some studies have shown that ethylene and salicylic acid can instead decrease the magnitude of ozone-induced cell death. Therefore, we studied the defensive roles of ethylene and salicylic acid against ozone. Unlike the wild-type, Col-0, Arabidopsis mutants deficient in ethylene signaling (ein2) or salicylic acid biosynthesis (sid2) generated high levels of superoxide and exhibited visible leaf injury, indicating that ethylene and salicylic acid can reduce ozone damage. Macroarray analysis suggested that the ethylene and salicylic acid defects influenced glutathione (GSH) metabolism. Increases in the reduced form of GSH occurred in Col-0 6 h after ozone exposure, but little GSH was detected in ein2 and sid2 mutants, suggesting that GSH levels were affected by ethylene or salicylic acid signaling. We performed gene expression analysis by real-time polymerase chain reaction using genes involved in GSH metabolism. Induction of gamma-glutamylcysteine synthetase (GSH1), glutathione synthetase (GSH2), and glutathione reductase 1 (GR1) expression occurred normally in Col-0, but at much lower levels in ein2 and sid2. Enzymatic activities of GSH1 and GSH2 in ein2 and sid2 were significantly lower than in Col-0. Moreover, ozone-induced leaf damage observed in ein2 and sid2 was mitigated by artificial elevation of GSH content. Our results suggest that ethylene and salicylic acid protect against ozone-induced leaf injury by increasing de novo biosynthesis of GSH.
Apoplastic plant subtilases support arbuscular mycorrhiza development in Lotus japonicus

Naoya Takeda, Shusei Sato, Erika Asamizu, Satoshi Tabata, Martin Parniske

PLANT JOURNAL　58　(5)　766-777　2009/06

DOI： 10.1111/j.1365-313X.2009.03824.x 　

ISSN： 0960-7412

eISSN： 1365-313X
A Snapshot of the Emerging Tomato Genome Sequence Peer-reviewed

Lukas A. Mueller, Rene Klein Lankhorst, Steven D. Tanksley, James J. Giovannoni, Ruth White, Julia Vrebalov, Zhangjun Fei, Joyce van Eck, Robert Buels, Adri A. Mills, Naama Menda, Isaak Y. Tecle, Aureliano Bombarely, Stephen Stack, Suzanne M. Royer, Song-Bin Chang, Lindsay A. Shearer, Byung Dong Kim, Sung-Hwan Jo, Cheol-Goo Hur, Doil Choi, Chang-Bao Li, Jiuhai Zhao, Hongling Jiang, Yu Geng, Yuanyuan Dai, Huajie Fan, Jinfeng Chen, Fei Lu, Jinfeng Shi, Shouhong Sun, Jianjun Chen, Xiaohua Yang, Chen Lu, Mingsheng Chen, Zhukuan Cheng, Chuanyou Li, Hongqing Ling, Yongbiao Xue, Ying Wang, Graham B. Seymour, Gerard J. Bishop, Glenn Bryan, Jane Rogers, Sarah Sims, Sarah Butcher, Daniel Buchan, James Abbott, Helen Beasley, Christine Nicholson, Clare Riddle, Sean Humphray, Karen McLaren, Saloni Mathur, Shailendra Vyas, Amolkumar U. Solanke, Rahul Kumar, Vikrant Gupta, Arun K. Sharma, Paramjit Khurana, Jitendra P. Khurana, Akhilesh Tyagi, Sarita, Parul Chowdhury, Smriti Shridhar, Debasis Chattopadhyay, Awadhesh Pandit, Pradeep Singh, Ajay Kumar, Rekha Dixit, Archana Singh, Sumera Praveen, Vivek Dalal, Mahavir Yadav, Irfan Ahmad Ghazi, Kishor Gaikwad, Tilak Raj Sharma, Trilochan Mohapatra, Nagendra Kumar Singh, Dora Szinay, Hans de Jong, Sander Peters, Marjo van Staveren, Erwin Datema, Mark W. E. J. Fiers, Roeland C. H. J. van Ham, P. Lindhout, Murielle Philippot, Pierre Frasse, Farid Regad, Mohamed Zouine, Mondher Bouzayen, Erika Asamizu, Shusei Sato, Hiroyuki Fukuoka, Satoshi Tabata, Daisuke Shibata, Miguel A. Botella, M. Perez-Alonso, V. Fernandez-Pedrosa, Sonia Osorio, Amparo Mico, Antonio Granell, Zhonghua Zhang, Jun He, Sanwen Huang, Yongchen Du, Dongyu Qu, Longfei Liu, Dongyuan Liu, Jun Wang, Zhibiao Ye, Wencai Yang, Guoping Wang, Alessandro Vezzi, Sara Todesco, Giorgio Valle, Giulia Falcone, Marco Pietrella, Giovanni Giuliano, Silvana Grandillo, Alessandra Traini, Nunzio D'Agostino, Maria Luisa Chiusano, Mara Ercolano, Amalia Barone, Luigi Frusciante, Heiko Schoof, Anika Joecker, Remy Bruggmann, Manuel Spannagl, Klaus X. F. Mayer, Roderic Guigo, Francisco Camara, Stephane Rombauts, Jeffrey A. Fawcett, Yves Van de Peer, Sandra Knapp, Dani Zamir, Willem Stiekema

PLANT GENOME　2　(1)　78-92　2009/05

DOI： 10.3835/plantgenome2008.08.0005 　

ISSN： 1940-3372
The NGATHA Genes Direct Style Development in the Arabidopsis Gynoecium

Marina Trigueros, Marisa Navarrete-Gomez, Shusei Sato, Sioux K. Christensen, Soraya Pelaz, Detlef Weigel, Martin F. Yanofsky, Cristina Ferrandiz

PLANT CELL　21　(5)　1394-1409　2009/05

DOI： 10.1105/tpc.109.065508 　

ISSN： 1040-4651
The Temperature-Sensitive brush Mutant of the Legume Lotus japonicus Reveals a Link between Root Development and Nodule Infection by Rhizobia

Makoto Maekawa-Yoshikawa, Judith Mueller, Naoya Takeda, Takaki Maekawa, Shusei Sato, Satoshi Tabata, Jillian Perry, Trevor L. Wang, Martin Groth, Andreas Brachmann, Martin Parniske

PLANT PHYSIOLOGY　149　(4)　1785-1796　2009/04

DOI： 10.1104/pp.108.135160 　

ISSN： 0032-0889
ChlH, the H subunit of the Mg-chelatase, is an anti-sigma factor for SigE in Synechocystis sp PCC 6803

Takashi Osanai, Masahiko Imashimizu, Asako Seki, Shusei Sato, Satoshi Tabata, Sousuke Imamura, Munehiko Asayama, Masahiko Ikeuchi, Kan Tanaka

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA　106　(16)　6860-6865　2009/04

DOI： 10.1073/pnas.0810040106 　

ISSN： 0027-8424
Comparative transcriptomic characterization of aluminum, sodium chloride, cadmium and copper rhizotoxicities in Arabidopsis thaliana Peer-reviewed

Cheng-Ri Zhao, Takashi Ikka, Yoshiharu Sawaki, Yuriko Kobayashi, Yuji Suzuki, Takashi Hibino, Shigeru Sato, Nozomu Sakurai, Daisuke Shibata, Hiroyuki Koyama

BMC PLANT BIOLOGY　9　32　2009/03

DOI： 10.1186/1471-2229-9-32 　

ISSN： 1471-2229
TOO MUCH LOVE, a Root Regulator Associated with the Long-Distance Control of Nodulation in Lotus japonicus

Shimpei Magori, Erika Oka-Kira, Satoshi Shibata, Yosuke Umehara, Hiroshi Kouchi, Yoshihiro Hase, Atsushi Tanaka, Shusei Sato, Satoshi Tabata, Masayoshi Kawaguchi

MOLECULAR PLANT-MICROBE INTERACTIONS　22　(3)　259-268　2009/03

DOI： 10.1094/MPMI-22-3-0259 　

ISSN： 0894-0282

eISSN： 1943-7706
The Proteome of Seed Development in the Model Legume Lotus japonicus

Svend Dam, Brian S. Laursen, Jane H. Ornfelt, Bjarne Jochimsen, Hans Henrik Staerfeldt, Carsten Friis, Kasper Nielsen, Nicolas Goffard, Soren Besenbacher, Lene Krusell, Shusei Sato, Satoshi Tabata, Ida B. Thogersen, Jan J. Enghild, Jens Stougaard

PLANT PHYSIOLOGY　149　(3)　1325-1340　2009/03

DOI： 10.1104/pp.108.133405 　

ISSN： 0032-0889

eISSN： 1532-2548
A novel manual pooling system for preparing three-dimensional pools of a deep coverage soybean bacterial artificial chromosome library

Zhengjun Xia, Satoshi Watanabe, Qingshan Chen, Shusei Sato, Kyuya Harada

MOLECULAR ECOLOGY RESOURCES　9　(2)　516-524　2009/03

DOI： 10.1111/j.1755-0998.2008.02503.x 　

ISSN： 1755-098X
Proanthocyanidin Biosynthesis in Forage Legumes with Especial Reference to the Regulatory Role of R2R3MYB Transcription Factors and Their Analysis in Lotus japonicus Peer-reviewed

Mark P. Robbins, David Bryant, Samantha Gill, Phillip Morris, Paul Bailey, Tracey Welham, Cathie Martin, Trevor L. Wang, Takakazu Kaneko, Shusei Sato, Satoshi Tabata, Francesco Paolocci

MOLECULAR BREEDING OF FORAGE AND TURF　125-+　2009

DOI： 10.1007/978-0-387-79144-9_11 　
The glutathione peroxidase gene family of Lotus japonicus: characterization of genomic clones, expression analyses and immunolocalization in legumes

Javier Ramos, Manuel A. Matamoros, Loreto Naya, Euan K. James, Nicolas Rouhier, Shusei Sato, Satoshi Tabata, Manuel Becana

NEW PHYTOLOGIST　181　(1)　103-114　2009

DOI： 10.1111/j.1469-8137.2008.02629.x 　

ISSN： 0028-646X

eISSN： 1469-8137
Rearrangement of Actin Cytoskeleton Mediates Invasion of Lotus japonicus Roots by Mesorhizobium loti

Keisuke Yokota, Eigo Fukai, Lene H. Madsen, Anna Jurkiewicz, Paloma Rueda, Simona Radutoiu, Mark Held, Md Shakhawat Hossain, Krzysztof Szczyglowski, Giulia Morieri, Giles E. D. Oldroyd, J. Allan Downie, Mette W. Nielsen, Anna Maria Rusek, Shusei Sato, Satoshi Tabata, Euan K. James, Hiroshi Oyaizu, Niels Sandal, Jens Stougaard

PLANT CELL　21　(1)　267-284　2009/01

DOI： 10.1105/tpc.108.063693 　

ISSN： 1040-4651
Nod factor/nitrate-induced CLE genes that drive HAR1-mediated systemic regulation of nodulation.

Satoru Okamoto, Erika Ohnishi, Shusei Sato, Hirokazu Takahashi, Mikio Nakazono, Satoshi Tabata, Masayoshi Kawaguchi

Plant & cell physiology　50　(1)　67-77　2009/01

DOI： 10.1093/pcp/pcn194 　

ISSN： 0032-0781
An analysis of synteny of Arachis with Lotus and Medicago sheds new light on the structure, stability and evolution of legume genomes

David J. Bertioli, Marcio C. Moretzsohn, Lene H. Madsen, Niels Sandal, Soraya C. M. Leal-Bertioli, Patricia M. Guimaraes, Birgit K. Hougaard, Jakob Fredslund, Leif Schauser, Anna M. Nielsen, Shusei Sato, Satoshi Tabata, Steven B. Cannon, Jens Stougaard

BMC GENOMICS　10　2009/01

DOI： 10.1186/1471-2164-10-45 　

ISSN： 1471-2164
Nodulation-Dependent Communities of Culturable Bacterial Endophytes from Stems of Field-Grown Soybeans

Takashi Okubo, Seishi Ikeda, Takakazu Kaneko, Shima Eda, Hisayuki Mitsui, Shusei Sato, Satoshi Tabata, Kiwamu Minamisawa

MICROBES AND ENVIRONMENTS　24　(3)　253-258　2009

DOI： 10.1264/jsme2.ME09125 　

ISSN： 1342-6311
Analyses of expression and phenotypes of knockout lines for Arabidopsis ABCF subfamily members

Tomohiko Kato, Satoshi Tabata, Shusei Sato

Plant Biotechnology　26　(4)　409-414　2009
Publisher: Japanese Society for Plant Cell and Molecular Biology
DOI： 10.5511/plantbiotechnology.26.409 　

ISSN： 1347-6114 1342-4580
Sequencing and Analysis of Approximately 40 000 Soybean cDNA Clones from a Full-Length-Enriched cDNA Library

Taishi Umezawa, Tetsuya Sakurai, Yasushi Totoki, Atsushi Toyoda, Motoaki Seki, Atsushi Ishiwata, Kenji Akiyama, Atsushi Kurotani, Takuhiro Yoshida, Keiichi Mochida, Mie Kasuga, Daisuke Todaka, Kyonoshin Maruyama, Kazuo Nakashima, Akiko Enju, Saho Mizukado, Selina Ahmed, Kyoko Yoshiwara, Kyuya Harada, Yasutaka Tsubokura, Masaki Hayashi, Shusei Sato, Toyoaki Anai, Masao Ishimoto, Hideyuki Funatsuki, Masayoshi Teraishi, Mitsuru Osaki, Takuro Shinano, Ryo Akashi, Yoshiyuki Sakaki, Kazuko Yamaguchi-Shinozaki, Kazuo Shinozaki

DNA RESEARCH　15　(6)　333-346　2008/12

DOI： 10.1093/dnares/dsn024 　

ISSN： 1340-2838

eISSN： 1756-1663
CYCLOPS, a mediator of symbiotic intracellular accommodation

Koji Yano, Satoko Yoshida, Judith Mueller, Sylvia Singh, Mari Banba, Kate Vickers, Katharina Markmann, Catharine White, Bettina Schuller, Shusei Sato, Erika Asamizu, Satoshi Tabata, Yoshikatsu Murooka, Jillian Perry, Trevor L. Wang, Masayoshi Kawaguchi, Haruko Imaizumi-Anraku, Makoto Hayashi, Martin Parniske

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA　105　(51)　20540-20545　2008/12

DOI： 10.1073/pnas.0806858105 　

ISSN： 0027-8424
ダイズ開花期関連遺伝子座FT3のマップベースクローニング

2008/10
Construction of signature-tagged mutant library in Mesorhizobium loti as a powerful tool for functional genomics. International-journal

Yoshikazu Shimoda, Hisayuki Mitsui, Hiroko Kamimatsuse, Kiwamu Minamisawa, Eri Nishiyama, Yoshiyuki Ohtsubo, Yuji Nagata, Masataka Tsuda, Sayaka Shinpo, Akiko Watanabe, Mitsuyo Kohara, Manabu Yamada, Yasukazu Nakamura, Satoshi Tabata, Shusei Sato

DNA research : an international journal for rapid publication of reports on genes and genomes　15　(5)　297-308　2008/10

DOI： 10.1093/dnares/dsn017 　

ISSN： 1340-2838
A High-density Linkage Map of Lotus japonicus Based on AFLP and SSR Markers

Xinwang Wang, Shusei Sato, Satoshi Tabata, Shinji Kawasaki

DNA RESEARCH　15　(5)　323-332　2008/10

DOI： 10.1093/dnares/dsn022 　

ISSN： 1340-2838
Legume anchor markers link syntenic regions between Phaseolus vulgaris, Lotus japonicus, Medicago truncatula and Arachis

Birgit Kristine Hougaard, Lene Heegaard Madsen, Niels Sandal, Marcio de Carvalho Moretzsohn, Jakob Fredslund, Leif Schauser, Anna Marie Nielsen, Trine Rohde, Shusei Sato, Satoshi Tabata, David John Bertioli, Jens Stougaard

GENETICS　179　(4)　2299-2312　2008/08

DOI： 10.1534/genetics.108.090084 　

ISSN： 0016-6731
A positive regulatory role for LjERF1 in the nodulation process is revealed by systematic analysis of nodule-associated transcription factors of Lotus japonicus

Erika Asamizu, Yoshikazu Shimoda, Hiroshi Kouchi, Satoshi Tabata, Shusei Sato

PLANT PHYSIOLOGY　147　(4)　2030-2040　2008/08

DOI： 10.1104/pp.108.118141 　

ISSN： 0032-0889
Genome structure of the legume, Lotus japonicus. International-journal

Shusei Sato, Yasukazu Nakamura, Takakazu Kaneko, Erika Asamizu, Tomohiko Kato, Mitsuteru Nakao, Shigemi Sasamoto, Akiko Watanabe, Akiko Ono, Kumiko Kawashima, Tsunakazu Fujishiro, Midori Katoh, Mitsuyo Kohara, Yoshie Kishida, Chiharu Minami, Shinobu Nakayama, Naomi Nakazaki, Yoshimi Shimizu, Sayaka Shinpo, Chika Takahashi, Tsuyuko Wada, Manabu Yamada, Nobuko Ohmido, Makoto Hayashi, Kiichi Fukui, Tomoya Baba, Tomoko Nakamichi, Hirotada Mori, Satoshi Tabata

DNA research : an international journal for rapid publication of reports on genes and genomes　15　(4)　227-39　2008/08

DOI： 10.1093/dnares/dsn008 　

ISSN： 1340-2838
Genetic control of floral zygomorphy in pea (Pisum sativum L.)

Zheng Wang, Yonghai Luo, Xin Li, Liping Wang, Shilei Xu, Jun Yang, Lin Weng, Shusei Sato, Satoshi Tabata, Mike Ambrose, Catherine Rameau, Xianzhong Feng, Xiaohe Hu, Da Luo

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA　105　(30)　10414-10419　2008/07

DOI： 10.1073/pnas.0803291105 　

ISSN： 0027-8424
The Arabidopsis OBERON1 and OBERON2 genes encode plant homeodomain finger proteins and are required for apical meristem maintenance

Shunsuke Saiga, Chihiro Furumizu, Ryusuke Yokoyama, Tetsuya Kurata, Shusei Sato, Tomohiko Kato, Satoshi Tabata, Mitsuhiro Suzuki, Yoshibumi Komeda

DEVELOPMENT　135　(10)　1751-1759　2008/05

DOI： 10.1242/dev.014993 　

ISSN： 0950-1991
Polyubiquitin promoter-based binary vectors for overexpression and gene silencing in Lotus japonicus

Takaki Maekawa, Mitsumasa Kusakabe, Yoshikazu Shimoda, Shusel Sato, Satoshi Tabata, Yoshikatsu Murooka, Makoto Hayashi

MOLECULAR PLANT-MICROBE INTERACTIONS　21　(4)　375-382　2008/04

DOI： 10.1094/MPMI-21-4-0375 　

ISSN： 0894-0282
A large scale analysis of protein-protein interactions in the nitrogen-fixing bacterium Mesorhizobium loti. International-journal

Yoshikazu Shimoda, Sayaka Shinpo, Mitsuyo Kohara, Yasukazu Nakamura, Satoshi Tabata, Shusei Sato

DNA research : an international journal for rapid publication of reports on genes and genomes　15　(1)　13-23　2008/02/29

DOI： 10.1093/dnares/dsm028 　

ISSN： 1340-2838
Functional differentiation of Lotus japonicus TT2s, R2R3-MYB transcription factors comprising a multigene family

Kazuko Yoshida, Rieko Iwasaka, Takakazu Kaneko, Shusei Sato, Satoshi Tabata, Masaaki Sakuta

PLANT AND CELL PHYSIOLOGY　49　(2)　157-169　2008/02

DOI： 10.1093/pcp/pcn009 　

ISSN： 0032-0781

eISSN： 1471-9053
STRUCTURAL AND COMPARATIVE GENOME ANALYSIS OF LOTUS JAPONICUS Peer-reviewed

S. Sato, T. Kaneko, Y. Nakamura, E. Asamizu, T. Kato, S. Tabata

BIOLOGICAL NITROGEN FIXATION: TOWARDS POVERTY ALLEVIATION THROUGH SUSTAINABLE AGRICULTURE　42　217-219　2008
Genome structure of the legume, Lotus japonicus Peer-reviewed

Shusei Sato, Yasukazu Nakamura, Takakazu Kaneko, Erika Asamizu, Tomohiko Kato, Mitsuteru Nakao, Shigemi Sasamoto, Akiko Watanabe, Akiko Ono, Kumiko Kawashima, Tsunakazu Fujishiro, Midori Katoh, Mitsuyo Kohara, Yoshie Kishida, Chiharu Minami, Shinobu Nakayama, Naomi Nakazaki, Yoshimi Shimizu, Sayaka Shinpo, Chika Takahashi, Tsuyuko Wada, Manabu Yamada, Nobuko Ohmido, Makoto Hayashi, Kiichi Fukui, Tomoya Baba, Tomoko Nakamichi, Hirotada Mori, Satoshi Tabata

DNA Research　15　(4)　227-239　2008

DOI： 10.1093/dnares/dsn008 　

ISSN： 1340-2838 1756-1663
Ultrastructural characterization of exine development of the transient defective exine 1 mutant suggests the existence of a factor involved in constructing reticulate exine architecture from sporopollenin aggregates

Tohru Ariizumi, Takahiro Kawanabe, Katsunori Hatakeyama, Shusei Sato, Tomohiko Kato, Satoshi Tabata, Kinya Toriyama

PLANT AND CELL PHYSIOLOGY　49　(1)　58-67　2008/01

DOI： 10.1093/pcp/pcm167 　

ISSN： 0032-0781
Characterization of soybean genome based on synteny analysis with Lotus japonicus

Yasutaka Tsubokura, Ryutaku Onda, Shusei Sato, Zhengjun Xia, Masaki Hayashi, Yukie Fukushima, Satoshi Tabata, Kyuya Harada

Breeding Science　58　(2)　157-167　2008

DOI： 10.1270/jsbbs.58.157 　

ISSN： 1344-7610 1347-3735
Gene trap strategy, an effective tool for identification of novel genes expressed in anther tissues in Arabidopsis thaliana

Tohru Ariizumi, Takahiro Kawanabe, Shusei Sato, Tomohiko Kato, Satoshi Tabata, Kinya Toriyama

PLANT BIOTECHNOLOGY　25　(4)　391-395　2008

DOI： 10.5511/plantbiotechnology.25.391 　

ISSN： 1342-4580
Arabidopsis VIP6/ELF8, the homolog of CTR9 component of the transcriptional complex PAF1, is essential for plant development

Takeshi Shiraya, Shusei Sato, Tomohiko Kato, Satoshi Tabata, Toshisuke Iwasaki

PLANT BIOTECHNOLOGY　25　(5)　447-455　2008

DOI： 10.5511/plantbiotechnology.25.447 　

ISSN： 1342-4580
A large scale analysis of protein-protein interactions in the nitrogen-fixing bacterium mesorhizobium loti

Yoshikazu Shimoda, Sayaka Shinpo, Mitsuyo Kohara, Yasukazu Nakamura, Satoshi Tabata, Shusei Sato

DNA Research　15　(1)　13-23　2008

DOI： 10.1093/dnares/dsm028 　

ISSN： 1340-2838 1756-1663
Characterization of the soybean genome using EST-derived microsatellite markers. International-journal

Hiroshi Hisano, Shusei Sato, Sachiko Isobe, Shigemi Sasamoto, Tsuyuko Wada, Ai Matsuno, Tsunakazu Fujishiro, Manabu Yamada, Shinobu Nakayama, Yasukazu Nakamura, Satoshi Watanabe, Kyuya Harada, Satoshi Tabata

DNA research : an international journal for rapid publication of reports on genes and genomes　14　(6)　271-81　2007/12/31

DOI： 10.1093/dnares/dsm025 　

ISSN： 1340-2838
Expression analysis of gene trap lines and mapping of donor loci for Dissociation transposition in Arabidopsis

Tomohiko Katoa, Satoshi Tabata, Shusei Sato

PLANT BIOTECHNOLOGY　24　(5)　467-479　2007/12

DOI： 10.5511/plantbiotechnology.24.467 　

ISSN： 1342-4580
A large-scale protein protein interaction analysis in Synechocystis sp. PCC6803. International-journal

Shusei Sato, Yoshikazu Shimoda, Akiko Muraki, Mitsuyo Kohara, Yasukazu Nakamura, Satoshi Tabata

DNA research : an international journal for rapid publication of reports on genes and genomes　14　(5)　207-16　2007/10/31

DOI： 10.1093/dnares/dsm021 　

ISSN： 1340-2838
Arabidopsis TRANSPARENT TESTA GLABRA2 is directly regulated by R2R3 MYB transcription factors and is involved in regulation of GLABRA2 transcription in epidermal differentiation

Tetsuya Ishida, Sayoko Hattori, Ryosuke Sano, Kayoko Inoue, Yumiko Shirano, Hiroaki Hayashi, Daisuke Shibata, Shusei Sato, Tomohiko Kato, Satoshi Tabata, Kiyotaka Okada, Takuji Wada

PLANT CELL　19　(8)　2531-2543　2007/08

DOI： 10.1105/tpc.107.052274 　

ISSN： 1040-4651
Quantitative trait locus analysis of multiple agronomic traits in the model legume Lotus japonicus

Takahiro Gondo, Shusei Sato, Kenji Okumura, Satoshi Tabata, Ryo Akashi, Sachiko Isobe

GENOME　50　(7)　627-637　2007/07

DOI： 10.1139/G07-040 　

ISSN： 0831-2796
Microbial diversity in milled rice as revealed by riosomal Intergenic spacer analysis Peer-reviewed

Seishi Ikeda, Shin-ichi Fuji, Toshiro Sato, Hiromitsu Furuya, Hideki Naito, Nozomi Ytow, Hiroshi Ezura, Kiwamu Minamisawa, Tatsuhito Fujimura

Microbes Environ　22　(2)　165-174　2007/06

DOI： 10.1264/jsme2.22.165 　
TILLING mutants of Lotus japonicus reveal that nitrogen assimilation and fixation can occur in the absence of nodule-enhanced sucrose synthase

Irmtraud Horst, Tracey Welham, Simon Kelly, Takakazu Kaneko, Shusei Sato, Satoshi Tabata, Martin Parniske, Trevor L. Wang

PLANT PHYSIOLOGY　144　(2)　806-820　2007/06

DOI： 10.1104/pp.107.097063 　

ISSN： 0032-0889

eISSN： 1532-2548
Genome sequencing and genome resources in model legumes. International-journal

Shusei Sato, Yasukazu Nakamura, Erika Asamizu, Sachiko Isobe, Satoshi Tabata

Plant physiology　144　(2)　588-93　2007/06

DOI： 10.1104/pp.107.097493 　

ISSN： 0032-0889
Sugar-inducible expression of the nucleolin-1 gene of Arabidopsis thaliana and its role in ribosome synthesis, growth and development

Hisae Kojima, Takamasa Suzuki, Takenori Kato, Ken-ichi Enomoto, Shusei Sato, Tomohiko Kato, Satoshi Tabata, Julio Saez-Vasquez, Echeverria Manuel, Tsuyoshi Nakagawa, Sumie Ishiguro, Kenzo Nakamura

PLANT JOURNAL　49　(6)　1053-1063　2007/03

DOI： 10.1111/j.1365-313X.2006.03016.x 　

ISSN： 0960-7412
Phytochelatin synthases of the model legume Lotus japonicus. A small multigene family with differential response to cadmium and alternatively spliced variants

Javier Ramos, Maria R. Clemente, Loreto Naya, Jorge Loscos, Carmen Perez-Rontome, Shusei Sato, Satoshi Tabata, Manuel Becana

PLANT PHYSIOLOGY　143　(3)　1110-1118　2007/03

DOI： 10.1104/pp.106.090894 　

ISSN： 0032-0889
Characterization of genomic clones and expression analysis of the three types of superoxide dismutases during nodule development in Lotus japonicus

Maria C. Rubio, Manuel Becana, Shusei Sato, Euan K. James, Satoshi Tabata, Herman P. Spaink

MOLECULAR PLANT-MICROBE INTERACTIONS　20　(3)　262-275　2007/03

DOI： 10.1094/MPMI-20-3-0262 　

ISSN： 0894-0282
A novel ankyrinrepeat membrane protein, IGN1, is required for persistence of nitrogen-fixing symbiosis in root nodules of Lotus japonicus

Hirotaka Kumagai, Tsuneo Hakoyama, Yosuke Umehara, Shusei Sato, Takakazu Kaneko, Satoshi Tabata, Hiroshi Kouchi

PLANT PHYSIOLOGY　143　(3)　1293-1305　2007/03

DOI： 10.1104/pp.106.095356 　

ISSN： 0032-0889

eISSN： 1532-2548
Genome-wide analyses of the structural gene families involved in the legume-specific 5-deoxyisoflavonoid biosynthesis of Lotus japonicus. International-journal

Norimoto Shimada, Shusei Sato, Tomoyoshi Akashi, Yasukazu Nakamura, Satoshi Tabata, Shin-Ichi Ayabe, Toshio Aoki

DNA research : an international journal for rapid publication of reports on genes and genomes　14　(1)　25-36　2007/02/28

DOI： 10.1093/dnares/dsm004 　

ISSN： 1340-2838
NUCLEOPORIN85 is required for calcium spiking, fungal and bacterial symbioses, and seed production in Lotus japonicus

Katsuharu Saito, Makoto Yoshikawa, Koji Yano, Hiroki Miwa, Hisaki Uchida, Erika Asamizu, Shusei Sato, Satoshi Tabata, Haruko Imaizumi-Anraku, Yosuke Umehara, Hiroshi Kouchi, Yoshikatsu Murooka, Krzysztof Szczyglowski, J. Allan Downie, Martin Parniske, Makoto Hayashi, Masayoshi Kawaguchi

PLANT CELL　19　(2)　610-624　2007/02

DOI： 10.1105/tpc.106.046938 　

ISSN： 1040-4651

eISSN： 1532-298X
AHK5 histidine kinase regulates root elongation through an ETR1-dependent abscisic acid and ethylene signaling pathway in Arabidopsis thaliana

Ayako Iwama, Takafumi Yamashino, Yasushi Tanaka, Hitoshi Sakakibara, Tatsuo Kakimoto, Shusei Sato, Tomohiko Kato, Satoshi Tabata, Akira Nagatani, Takeshi Mizuno

PLANT AND CELL PHYSIOLOGY　48　(2)　375-380　2007/02

DOI： 10.1093/pcp/pcl065 　

ISSN： 0032-0781
Arabidopsis plasma membrane protein crucial for Ca2+ influx and touch sensing in roots

Yuko Nakagawa, Takeshi Katagiri, Kazuo Shinozaki, Zhi Qi, Hitoshi Tatsumi, Takuya Furuichi, Akio Kishigami, Masahiro Sokabe, Itaru Kojima, Shusei Sato, Tomohiko Kato, Satoshi Tabata, Kazuko Iida, Asuka Terashima, Masataka Nakano, Mitsunobu Ikeda, Takuya Yamanaka, Hidetoshi Iida

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA　104　(9)　3639-3644　2007/02

DOI： 10.1073/pnas.0607703104 　

ISSN： 0027-8424
Proteases in plant root symbiosis

Naoya Takeda, Catherine Kistner, Sonja Kosuta, Thilo Winzer, Andrea Pitzschke, Martin Groth, Shusel Sato, Takakazu Kaneko, Satoshi Tabata, Martin Parniske

PHYTOCHEMISTRY　68　(1)　111-121　2007/01

DOI： 10.1016/j.phytochem.2006.09.022 　

ISSN： 0031-9422
Chromosome maps of legumes

Nobuko Ohmido, Shusei Sato, Satoshi Tabata, Kiichi Fukui

CHROMOSOME RESEARCH　15　(1)　97-103　2007/01

DOI： 10.1007/s10577-006-1109-7 　

ISSN： 0967-3849
A gain-of-function mutation in a cytokinin receptor triggers spontaneous root nodule organogenesis

Leila Tirichine, Niels Sandal, Lene H. Madsen, Simona Radutoiu, Anita S. Albrektsen, Shusei Sato, Erika Asamizu, Satoshi Tabata, Jens Stougaard

SCIENCE　315　(5808)　104-107　2007/01

DOI： 10.1126/science.1132397 　

ISSN： 0036-8075
A cytokinin perception mutant colonized by Rhizobium in the absence of nodule organogenesis

Jeremy D. Murray, Bogumil J. Karas, Shusei Sato, Satoshi Tabata, Lisa Amyot, Krzysztof Szczyglowski

SCIENCE　315　(5808)　101-104　2007/01

DOI： 10.1126/science.1132514 　

ISSN： 0036-8075
C-elegans RBX-2-CUL-5- and RBX-1-CUL-2-based complexes are redundant for oogenesis and activation of the MAP kinase MPK-1

Yohei Sasagawa, Shusei Sato, Teru Ogura, Atsushi Higashitani

FEBS LETTERS　581　(1)　145-150　2007/01

DOI： 10.1016/j.febslet.2006.12.009 　

ISSN： 0014-5793
Erratum: Legume genome evolution viewed through the Medicago truncatula and Lotus japonicus genomes (Proceedings of the National Academy of Sciences of the United States of America (2006) 103 (14959-14964) DOI: 10.1073/pnas.0603228103)

Steven B. Cannon, Lieven Sterck, Stephane Rombauts, Shusei Sato, Foo Cheung, Jérôme Gouzy, Xiaohong Wang, Joann Mudge, Jayprakash Vasdewani, Thomas Schiex, Manuel Spannagl, Erin Monaghan, Christine Nicholson, Sean J. Humphray, Heiko Schoof, Klaus F X Mayer, Jane Rogers, Francis Quétier, Giles E. Oldroyd, Frédéric Debellé, Douglas R. Cook, Ernest F. Retzel, Bruce A. Roe, Christopher D. Town, Satoshi Tabata, Yves Van De Peer, Nevin D. Young

Proceedings of the National Academy of Sciences of the United States of America　103　18026　2006/11/21

DOI： 10.1073/pnas.0609222103 　

ISSN： 0027-8424
Genome-wide analysis of ATP-binding cassette (ABC) proteins in a model legume plant, Lotus japonicus: comparison with Arabidopsis ABC protein family. International-journal

Akifumi Sugiyama, Nobukazu Shitan, Shusei Sato, Yasukazu Nakamura, Satoshi Tabata, Kazufumi Yazaki

DNA research : an international journal for rapid publication of reports on genes and genomes　13　(5)　205-28　2006/10/31

DOI： 10.1093/dnares/dsl013 　

ISSN： 1340-2838
Gene trapping in arabidopsis reveals genes involved in vascular development

Shingo Nagawa, Shinichirou Sawa, Shusei Sato, Tomohiko Kato, Satoshi Tabata, Hiroo Fukuda

PLANT AND CELL PHYSIOLOGY　47　(10)　1394-1405　2006/10

DOI： 10.1093/pcp/pcl009 　

ISSN： 0032-0781
Legume genome evolution viewed through the Medicago truncatula and Lotus japonicus genomes

Steven B. Cannon, Lieven Sterck, Stephane Rombauts, Shusei Sato, Foo Cheung, Jerome Gouzy, Xiaohong Wang, Joann Mudge, Jayprakash Vasdewani, Thomas Scheix, Manuel Spannagl, Erin Monaghan, Christine Nicholson, Sean J. Humphray, Heiko Schoof, Klaus F. X. Mayer, Jane Rogers, Francis Quetier, Giles E. Oldroyd, Frederic Debelle, Douglas R. Cook, Ernest F. Retzel, Bruce A. Roe, Christopher D. Town, Satoshi Tabata, Yves Van de Peer, Nevin D. Young

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA　103　(40)　14959-14964　2006/10

DOI： 10.1073/pnas.0603228103 　

ISSN： 0027-8424
Roles of Arabidopsis ATP/ADP isopentenyltransferases and tRNA isopentenyltransferases in cytokinin biosynthesis

Kaori Miyawaki, Petr Tarkowski, Miho Matsumoto-Kitano, Tomohiko Kato, Shusei Sato, Danuse Tarkowska, Satoshi Tabata, Goran Sandberg, Tatsuo Kakimoto

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA　103　(44)　16598-16603　2006/10

DOI： 10.1073/pnas.0603522103 　

ISSN： 0027-8424
Accumulation of chloroplast DNA sequences on the Y chromosome of Silene latifolia

Eduard Kejnovsky, Zdenek Kubat, Roman Hobza, Martina Lengerova, Shusei Sato, Satoshi Tabata, Kiichi Fukui, Sachihiro Matsunaga, Boris Vyskot

GENETICA　128　(1-3)　167-175　2006/09

DOI： 10.1007/s10709-005-5701-0 　

ISSN： 0016-6707
Rhizobial networks for symbiosis with legumes

Kiwamu Minamisawa, Kazuhiko Saeki, Shusei Sato, Yoshikazu Shimoda

Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme.　51　(9)　1044-1050　2006/08/01

ISSN： 0039-9450
[Genome analysis and resource development of Lotus japonicus].

Shusei Sato, Yasukazu Nakamura, Satoshi Tabata

Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme　51　(9)　1051-7　2006/08

ISSN： 0039-9450
Identification of a Sed5-like SNARE gene LjSYP32-1 that contributes to nodule tissue formation of Lotus japonicus Peer-reviewed

Ha Thu Mai, Mika Nomura, Kaoru Takegawa, Erika Asamizu, Syusei Sato, Tomohiko Kato, Satoshi Tabata, Shigeyuki Tajima

PLANT AND CELL PHYSIOLOGY　47　(7)　829-838　2006/07

DOI： 10.1093/pcp/pcj054 　

ISSN： 0032-0781
Biosynthesis of ascorbic acid in legume root nodules

Manuel A. Matamoros, Jorge Loscos, Maria J. Coronado, Javier Ramos, Shusei Sato, Pilar S. Testillano, Satoshi Tabata, Manuel Becana

PLANT PHYSIOLOGY　141　(3)　1068-1077　2006/07

DOI： 10.1104/pp.106.081463 　

ISSN： 0032-0889
A starvation-specific serine protease gene, isp6(+), is involved in both autophagy and sexual development in Schizosaccharomyces pombe

Akio Nakashima, Takahiro Hasegawa, Saori Mori, Masaru Ueno, Shigeyasu Tanaka, Takashi Ushimaru, Shusei Sato, Masahiro Uritani

CURRENT GENETICS　49　(6)　403-413　2006/06

DOI： 10.1007/s00294-006-0067-0 　

ISSN： 0172-8083

eISSN： 1432-0983
Deregulation of a Ca2+/calmodulin-dependent kinase leads to spontaneous nodule development

L Tirichine, H Imaizumi-Anraku, S Yoshida, Y Murakami, LH Madsen, H Miwa, T Nakagawa, N Sandal, AS Albrektsen, M Kawaguchi, A Downie, S Sato, S Tabata, H Kouchi, M Parniske, S Kawasaki, J Stougaard

NATURE　441　(7097)　1153-1156　2006/06

DOI： 10.1038/nature04862 　

ISSN： 0028-0836
RNA interference of the Arabidopsis putative transcription factor TCP16 gene results in abortion of early pollen development

T Takeda, K Amano, MA Ohto, K Nakamura, S Sato, T Kato, S Tabata, C Ueguchi

PLANT MOLECULAR BIOLOGY　61　(1-2)　165-177　2006/05

DOI： 10.1007/s11103-006-6265-9 　

ISSN： 0167-4412
Lotus japonicus as a platform for legume research

S Sato, S Tabata

CURRENT OPINION IN PLANT BIOLOGY　9　(2)　128-132　2006/04

DOI： 10.1016/j.pbi.2006.01.008 　

ISSN： 1369-5266

eISSN： 1879-0356
Control of petal shape and floral zygomorphy in Lotus japonicus

XZ Feng, Z Zhao, ZX Tian, SL Xu, YH Luo, ZG Cai, YM Wang, J Yang, Z Wang, L Weng, JH Chen, LY Zheng, XZ Guo, JH Luo, SS Sato, S Tabata, W Ma, XL Cao, XH Hu, CR Sun, D Luo

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA　103　(13)　4970-4975　2006/03

DOI： 10.1073/pnas.0600681103 　

ISSN： 0027-8424
Functional and structural analysis of genes encoding oxidosqualene cyclases of Lotus japonicus

S Sawai, T Shindo, S Sato, T Kaneko, S Tabata, S Ayabe, T Aoki

PLANT SCIENCE　170　(2)　247-257　2006/02

DOI： 10.1016/j.plantsci.2005.08.027 　

ISSN： 0168-9452
A nucleoporin is required for induction of Ca2+ spiking in legume nodule development and essential for rhizobial and fungal symbiosis. International-journal

Norihito Kanamori, Lene Heegaard Madsen, Simona Radutoiu, Mirela Frantescu, Esben M H Quistgaard, Hiroki Miwa, J Allan Downie, Euan K James, Hubert H Felle, Line Lindegaard Haaning, Torben Heick Jensen, Shusei Sato, Yasukazu Nakamura, Satoshi Tabata, Niels Sandal, Jens Stougaard

Proceedings of the National Academy of Sciences of the United States of America　103　(2)　359-64　2006/01/10

DOI： 10.1073/pnas.0508883103 　

ISSN： 0027-8424
2P334 Light-induced dissociation of SyPixD (cyanobacterial BLUF type photoreceptor) from SyPixE (response regulator)(42. Sensory signal transduction,Poster Session,Abstract,Meeting Program of EABS & BSJ 2006)

Okajima Koji, Sato Shusei, Fukushima Yoshimasa, Kita Akiko, Ochiai Yuriko, Katayama Mitsunori, Itoh Shigeru, Tabata Satoshi, Ikeuchi Masahiko

Seibutsu Butsuri　46　(2)　S379　2006
Publisher: The Biophysical Society of Japan General Incorporated Association
DOI： 10.2142/biophys.46.S379_2 　
Community Analysis of Seed-Associated Microbes in Forage Crops using Culture-Independent Methods Peer-reviewed

Seishi Ikeda, Shin-Ichi Fuji, Toshiro Sato, Nozomi Ytow, Hiroshi Ezura, Kiwamu Minamisawa, Tatsuhito Fujimura

Microbes and Environments　21　(2)　112-121　2006

DOI： 10.1264/jsme2.21.112 　

ISSN： 1347-4405 1342-6311
Genetics of symbiosis in Lotus japonicus: Recombinant inbred lines, comparative genetic maps, and map position of 35 symbiotic loci

N Sandal, TR Petersen, J Murray, Y Umehara, B Karas, K Yano, H Kumagai, M Yoshikawa, K Saito, M Hayashi, Y Murakami, XW Wang, T Hakoyama, H Imaizumi-Anraku, S Sato, T Kato, WL Chen, MS Hossain, S Shibata, TL Wang, K Yokota, K Larsen, N Kanamori, E Madsen, S Radutoiu, LH Madsen, TG Radu, L Krusell, Y Ooki, M Banba, M Betti, N Rispail, L Skot, E Tuck, J Perry, S Yoshida, K Vickers, J Pike, L Mulder, M Charpentier, J Muller, R Ohtomo, T Kojima, S Ando, AJ Marquez, PM Gresshoff, K Harada, J Webb, S Hata, N Suganuma, H Kouchi, S Kawasaki, S Tabata, M Hayashi, M Parniske, K Szczyglowski, M Kawaguchi, J Stougaard

MOLECULAR PLANT-MICROBE INTERACTIONS　19　(1)　80-91　2006/01

DOI： 10.1094/MPMI-19-0080 　

ISSN： 0894-0282

eISSN： 1943-7706
Cell-to-cell movement of the CAPRICE protein in Arabidopsis root epidermal cell differentiation

T Kurata, T Ishida, C Kawabata-Awai, M Noguchi, S Hattori, R Sano, R Nagasaka, R Tominaga, Y Koshino-Kimura, T Kato, S Sato, S Tabata, K Okada, T Wada

DEVELOPMENT　132　(24)　5387-5398　2005/12

DOI： 10.1242/dev.02139 　

ISSN： 0950-1991
Activation tagging approach in a model legume, Lotus japonicus.

Ryujiro Imaizumi, Shusei Sato, Nanako Kameya, Ikuo Nakamura, Yasukazu Nakamura, Satoshi Tabata, Shin-Ichi Ayabe, Toshio Aoki

Journal of plant research　118　(6)　391-9　2005/12

DOI： 10.1007/s10265-005-0231-5 　

ISSN： 0918-9440
klavier (klv), A novel hypernodulation mutant of Lotus japonicus affected in vascular tissue organization and floral induction

E Oka-Kira, K Tateno, K Miura, T Haga, M Hayashi, K Harada, S Sato, S Tabata, N Shikazono, A Tanaka, Y Watanabe, Fukuhara, I, T Nagata, M Kawaguchi

PLANT JOURNAL　44　(3)　505-515　2005/11

DOI： 10.1111/j.1365-313X.2005.02543.x 　

ISSN： 0960-7412

eISSN： 1365-313X
RAPD markers encoding retrotransposable elements are linked to the male sex in Cannabis sativa L. International-journal Peer-reviewed

Koichi Sakamoto, Tomoko Abe, Tomoki Matsuyama, Shigeo Yoshida, Nobuko Ohmido, Kiichi Fukui, Shinobu Satoh

Genome　48　(5)　931-6　2005/10

ISSN： 0831-2796

More details Close

Male-associated DNA sequences were analyzed in Cannabis sativa L. (hemp), a dioecious plant with heteromorphic sex chromosomes. DNA was isolated from male and female plants and subjected to random amplified polymorphic DNA analysis. Of 120 primers, 17 yielded 400 to 1500-bp fragments detectable in male, but not female, plants. These fragments were cloned and used as probes in gel-blot analysis of genomic DNA. When male and female DNA was hybridized with 2 of these male-specific fragments, MADC(male-associated DNA sequences in C. sativa)3 and MADC4, particularly intense bands specific to male plants were detected in addition to bands common to both sexes. The MADC3 and MADC4 sequences were shown to encode gag/pol polyproteins of copia-like retrotransposons. Fluorescence in situ hybridization with MADC3 and MADC4 as probes revealed a number of intense signals on the Y chromosome as well as dispersed signals on all chromosomes. The gel-blot analysis and fluorescence in situ hybridization results presented here support the hypothesis that accumulation of retrotransposable elements on the Y chromosome might be 1 cause of heteromorphism of sex chromosomes.
Identification of PamA as a PII-binding membrane protein important in nitrogen-related and sugar-catabolic gene expression in Synechocystis sp PCC 6803

T Osanai, S Sato, S Tabata, K Tanaka

JOURNAL OF BIOLOGICAL CHEMISTRY　280　(41)　34684-34690　2005/10

DOI： 10.1074/jbc.M507489200 　

ISSN： 0021-9258
High-temperature induction of male sterility during barley (Hordeum vulgare L.) anther development is mediated by transcriptional inhibition

M Abiko, K Akibayashi, T Sakata, M Kimura, M Kihara, K Itoh, E Asamizu, S Sato, H Takahashi, A Higashitani

SEXUAL PLANT REPRODUCTION　18　(2)　91-100　2005/09

DOI： 10.1007/s00497-005-0004-2 　

ISSN： 0934-0882
A comprehensive analysis of six dihydroflavonol 4-reductases encoded by a gene cluster of the Lotus japonicus genome

N Shimada, R Sasaki, S Sato, T Kaneko, S Tabata, T Aoki, S Ayabe

JOURNAL OF EXPERIMENTAL BOTANY　56　(419)　2573-2585　2005/09

DOI： 10.1093/jxb/eri251 　

ISSN： 0022-0957

eISSN： 1460-2431
Promoter trapping in Lotus japonicus reveals novel root and nodule GUS expression domains.

Diana Mihaela Buzas, Dasharath Lohar, Shusei Sato, Yasukazu Nakamura, Satoshi Tabata, Claudia Estelle Vickers, Jiri Stiller, Peter Michael Gresshoff

Plant & cell physiology　46　(8)　1202-12　2005/08

DOI： 10.1093/pcp/pci129 　

ISSN： 0032-0781
Seven Lotus japonicus genes required for transcriptional reprogramming of the root during fungal and bacterial symbiosis

C Kistner, T Winzer, A Pitzschke, L Mulder, S Sato, T Kaneko, S Tabata, N Sandal, J Stougaard, KJ Webb, K Szczyglowski, M Parniske

PLANT CELL　17　(8)　2217-2229　2005/08

DOI： 10.1105/tpc.105.032714 　

ISSN： 1040-4651
The HKM gene, which is identical to the MS1 gene of Arabidopsis thaliana, is essential for primexine formation and exine pattern formation

T Ariizumi, K Hatakeyama, K Hinata, S Sato, T Kato, S Tabata, K Toriyama

SEXUAL PLANT REPRODUCTION　18　(1)　1-7　2005/06

DOI： 10.1007/s00497-005-0242-3 　

ISSN： 0934-0882
Biochemical and functional characterization of BLUF-type flavin-binding proteins of two species of cyanobacteria

K Okajima, S Yoshihara, Y Fukushima, XX Geng, M Katayama, S Higashi, M Watanabe, S Sato, S Tabata, Y Shibata, S Itoh, M Ikeuchi

JOURNAL OF BIOCHEMISTRY　137　(6)　741-750　2005/06

DOI： 10.1093/jb/mvi089 　

ISSN： 0021-924X
Comparison of the transcript profiles from the root and the nodulating root of the model legume Lotus japonicus by serial analysis of gene expression. International-journal

Erika Asamizu, Yasukazu Nakamura, Shusei Sato, Satoshi Tabata

Molecular plant-microbe interactions : MPMI　18　(5)　487-98　2005/05

DOI： 10.1094/MPMI-18-0487 　

ISSN： 0894-0282
The sulfate transporter SST1 is crucial for symbiotic nitrogen fixation in Lotus japonicus root nodules. International-journal

Lene Krusell, Katja Krause, Thomas Ott, Guilhem Desbrosses, Ute Krämer, Shusei Sato, Yasukazu Nakamura, Satoshi Tabata, Euan K James, Niels Sandal, Jens Stougaard, Masayoshi Kawaguchi, Ai Miyamoto, Norio Suganuma, Michael K Udvardi

The Plant cell　17　(5)　1625-36　2005/05

DOI： 10.1105/tpc.104.030106 　

ISSN： 1040-4651
Sequencing the genespaces of Medicago truncatula and Lotus japonicus

ND Young, SB Cannon, S Sato, D Kim, DR Cook, CD Town, BA Roe, S Tabata

PLANT PHYSIOLOGY　137　(4)　1174-1181　2005/04

DOI： 10.1104/pp.104.057034 　

ISSN： 0032-0889

eISSN： 1532-2548
Invasion of Lotus japonicus root hairless 1 by Mesorhizobium loti involves the nodulation factor-dependent induction of root hairs

B Karas, J Murray, M Gorzelak, A Smith, S Sato, S Tabata, K Szczyglowski

PLANT PHYSIOLOGY　137　(4)　1331-1344　2005/04

DOI： 10.1104/pp.104.057513 　

ISSN： 0032-0889

eISSN： 1532-2548
Characterization of the Lotus japonicus symbiotic mutant lot1 that shows a reduced nodule number and distorted trichomes

Y Ooki, M Banba, K Yano, J Maruya, S Sato, S Tabata, K Saeki, M Hayashi, M Kawaguchi, K Izui, S Hata

PLANT PHYSIOLOGY　137　(4)　1261-1271　2005/04

DOI： 10.1104/pp.104.056630 　

ISSN： 0032-0889
Plastid proteins crucial for symbiotic fungal and bacterial entry into plant roots

H Imaizumi-Anraku, N Takeda, M Charpentier, J Perry, H Miwa, Y Umehara, H Kouchi, Y Murakami, L Mulder, K Vickers, J Pike, JA Downie, T Wang, S Sato, E Asamizu, S Tabata, M Yoshikawa, Y Murooka, GJ Wu, M Kawaguchi, S Kawasaki, M Parniske, M Hayashi

NATURE　433　(7025)　527-531　2005/02

DOI： 10.1038/nature03237 　

ISSN： 0028-0836

eISSN： 1476-4687
Screening of arabidopsis eniiancer-trap lines for sulfur-responsive genes in seeds Peer-reviewed

Y Ide, T Kato, S Sato, S Tabata, S Naito, T Fujiwara

Sulfur Transport and Assimilation in Plants in the Post Genomic Era　173-176　2005
Structural and functional genome analysis of Lotus japonicus and Mesorhizobium loti Peer-reviewed

S Sato, T Kaneko, Y Nakamura, E Asamizu, T Kato, S Tabata

Biological Nitrogen Fixation, Sustainable Agriculture and the Environment　41　123-125　2005
Symbiotic rhizobium and nitric oxide induce gene expression of non-symbiotic hemoglobin in Lotus japonicus

Y Shimoda, M Nagata, A Suzuki, M Abe, S Sato, T Kato, S Tabata, S Higashi, T Uchiumi

PLANT AND CELL PHYSIOLOGY　46　(1)　99-107　2005/01

DOI： 10.1093/pcp/pci001 　

ISSN： 0032-0781
Lotus burttii takes a position of the third corner in the Lotus molecular genetics triangle

Masayoshi Kawaguchi, Andrea Pedrosa-Harand, Koji Yano, Makoto Hayashi, Yoshikatsu Murooka, Katsuharu Saito, Toshiyuki Nagata, Kiyoshi Namai, Hiroshi Nishida, Daisuke Shibata, Shusei Sato, Satoshi Tabata, Masaki Hayashi, Kyuya Harada, Niels Sandal, Jens Stougaard, Andreas Bachmair, William F. Grant

DNA Research　12　(1)　69-77　2005

DOI： 10.1093/dnares/12.1.69 　

ISSN： 1340-2838
Roles of Arabidopsis AtREV1 and AtREV7 in translesion synthesis

Shinya Takahashi, Ayako Sakamoto, Shusei Sato, Tomohiko Kato, Satoshi Tabata, Atsushi Tanaka

Plant Physiology　138　(2)　870-881　2005

DOI： 10.1104/pp.105.060236 　

ISSN： 0032-0889
Comprehensive structural analysis of the genome of red clover (Trifolium pratense L.). International-journal

Shusei Sato, Sachiko Isobe, Erika Asamizu, Nobuko Ohmido, Ryohei Kataoka, Yasukazu Nakamura, Takakazu Kaneko, Nozomi Sakurai, Kenji Okumura, Irina Klimenko, Shigemi Sasamoto, Tsuyuko Wada, Akiko Watanabe, Mitsuyo Kohara, Tsunakazu Fujishiro, Satoshi Tabata

DNA research : an international journal for rapid publication of reports on genes and genomes　12　(5)　301-64　2005

DOI： 10.1093/dnares/dsi018 　

ISSN： 1340-2838

eISSN： 1756-1663
A high-density SSR linkage map of red clover and its transferability to other legumes

S. Isobe, S. Sato, E. Asamizu, I. Klimenko, N. N. Kozlov, K. Okumura, S. Tabata

Molecular Breeding for The Genetic Improvement of Forage Crops and Turf: Proceedings of the 4th International Symposium on The Molecular Breeding of Forage and Turf, a Satellite Workshop of the XXth International Grassland Congress, July 2005, Aberystwyth, Wales　137　2005
Publisher: Wageningen Academic Publishers
DOI： 10.3920/978-90-8686-555-0 　
Processing of ATG8s, ubiquitin-like proteins, and their deconjugation by ATG4s are essential for plant autophagy

K Yoshimoto, H Hanaoka, S Sato, T Kato, S Tabata, T Noda, Y Ohsumi

PLANT CELL　16　(11)　2967-2983　2004/11

DOI： 10.1105/tpc.104.025395 　

ISSN： 1040-4651
[Strategies for structural anaysis of genomes].

Shusei Sato, Nobuko Ohmido, Yasukazu Nakamura, Satoshi Tabata

Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme　49　(11 Suppl)　1828-33　2004/08

ISSN： 0039-9450
Disruption of the novel plant protein NEF1 affects lipid accumulation in the plastids of the tapetum and exine formation of pollen, resulting in male sterility in Arabidopsis thaliana

T Ariizumi, K Hatakeyama, K Hinata, R Inatsugi, Nishida, I, S Sato, T Kato, S Tabata, K Toriyama

PLANT JOURNAL　39　(2)　170-181　2004/07

DOI： 10.1111/j.1365-313X.2004.02118.x 　

ISSN： 0960-7412
Histidine kinase homologs that act as cytokinin receptors possess overlapping functions in the regulation of shoot and root growth in Arabidopsis

C Nishimura, Y Ohashi, S Sato, T Kato, S Tabata, C Ueguchi

PLANT CELL　16　(6)　1365-1377　2004/06

DOI： 10.1105/tpc.021477 　

ISSN： 1040-4651
Biosynthesis of the nitrile glucosides rhodiocyanoside A and D and the cyanogenic glucosides lotaustralin and linamarin in Lotus japonicus

K Forslund, M Morant, B Jorgensen, CE Olsen, E Asamizu, S Sato, S Tabata, S Bak

PLANT PHYSIOLOGY　135　(1)　71-84　2004/05

DOI： 10.1104/pp.103.038059 　

ISSN： 0032-0889
Loss of function of 3-hydroxy-3-methylglutaryl coenzyme A reductase 1 (HMG1) in Arabidopsis leads to dwarfing, early senescence and male sterility, and reduced sterol levels

M Suzuki, Y Kamide, N Nagata, H Seki, K Ohyama, H Kato, K Masuda, S Sato, T Kato, S Tabata, S Yoshida, T Muranaka

PLANT JOURNAL　37　(5)　750-761　2004/03

DOI： 10.1111/j.1365-313X.2003.02003.x 　

ISSN： 0960-7412
Exploitation of colinear relationships between the genomes of Lotus japonicus, Pisum sativum and Arabidopsis thaliana, for positional cloning of a legume symbiosis gene

S Stracke, S Sato, N Sandal, M Koyama, T Kaneko, S Tabata, M Parniske

THEORETICAL AND APPLIED GENETICS　108　(3)　442-449　2004/02

DOI： 10.1007/s00122-003-1438-2 　

ISSN： 0040-5752
Characteristics of the Lotus japonicus gene repertoire deduced from large-scale expressed sequence tag (EST) analysis. International-journal

Erika Asamizu, Yasukazu Nakamura, Shusei Sato, Satoshi Tabata

Plant molecular biology　54　(3)　405-14　2004/02

DOI： 10.1023/B:PLAN.0000036372.46942.b8 　

ISSN： 0167-4412
A receptor kinase gene of the LysM type is involved in legume perception of rhizobial signals

Madsen, E.B., Madsen, L.H., Radutoiu, S., Olbryt, M., Rakwalska, M., Szczyglowski, K., Sato, S., Kaneko, T., Tabata, S., S, al, N., Stougaard, J.

Chemtracts　17　(9)　2004
Specific gene expression in the root stele in the Arabidopsis gene trap lines

Y Komatsu, T Kuroha, S Sato, T Kato, S Tabata, S Satoh

PLANT AND CELL PHYSIOLOGY　45　(Suppl. S)　S215-S215　2004

ISSN： 0032-0781
Spermine is not essential for survival of Arabidopsis

A Imai, T Akiyama, T Kato, S Sato, S Tabata, KT Yamamoto, T Takahashi

FEBS LETTERS　556　(1-3)　148-152　2004/01

DOI： 10.1016/S0014-5793(03)01395-4 　

ISSN： 0014-5793
Structural analysis of a Lotus japonicus genome. V. Sequence features and mapping of sixty-four TAC clones which cover the 6.4 mb regions of the genome. International-journal

Tomohiko Kato, Shusei Sato, Yasukazu Nakamura, Takakazu Kaneko, Erika Asamizu, Satoshi Tabata

DNA research : an international journal for rapid publication of reports on genes and genomes　10　(6)　277-85　2003/12/31

DOI： 10.1093/dnares/10.6.277 　

ISSN： 1340-2838
Evolution and microsynteny of the apyrase gene family in three legume genomes

SB Cannon, WR McCombie, S Sato, S Tabata, R Denny, L Palmer, M Katari, ND Young, G Stacey

MOLECULAR GENETICS AND GENOMICS　270　(4)　347-361　2003/12

DOI： 10.1007/s00438-003-0928-x 　

ISSN： 1617-4615
Molecular analysis of the pathway for the synthesis of thiol tripeptides in the model legume Lotus japonicus

MA Matamoros, MR Clemente, S Sato, E Asamizu, S Tabata, J Ramos, JF Moran, J Stiller, PM Gresshoff, M Becana

MOLECULAR PLANT-MICROBE INTERACTIONS　16　(11)　1039-1046　2003/11

ISSN： 0894-0282
Comparative genetic studies on the APRR5 and APRR7 genes belonging to the APRR1/TOC1 quintet implicated in circadian rhythm, control of flowering time, and early photomorphogenesis

Y Yamamoto, E Sato, T Shimizu, N Nakamich, S Sato, T Kato, S Tabata, A Nagatani, T Yamashino, T Mizuno

PLANT AND CELL PHYSIOLOGY　44　(11)　1119-1130　2003/11

DOI： 10.1093/pcp/pcg148 　

ISSN： 0032-0781
Characterization of the APRR9 pseudo-response regulator belonging to the APRR1/TOC1 quintet in Arabidopsis thaliana

S Ito, A Matsushika, H Yamada, S Sato, T Kato, S Tabata, T Yamashino, T Mizuno

PLANT AND CELL PHYSIOLOGY　44　(11)　1237-1245　2003/11

DOI： 10.1093/pcp/pcg136 　

ISSN： 0032-0781
Plant recognition of symbiotic bacteria requires two LysM receptor-like kinases. International-journal

Simona Radutoiu, Lene Heegaard Madsen, Esben Bjørn Madsen, Hubert H Felle, Yosuke Umehara, Mette Grønlund, Shusei Sato, Yasukazu Nakamura, Satoshi Tabata, Niels Sandal, Jens Stougaard

Nature　425　(6958)　585-92　2003/10/09

DOI： 10.1038/nature02039 　

ISSN： 0028-0836

eISSN： 1476-4687
A receptor kinase gene of the LysM type is involved in legume perception of rhizobial signals

EB Madsen, LH Madsen, S Radutoiu, M Olbryt, M Rakwalska, K Szczyglowski, S Sato, T Kaneko, S Tabata, N Sandal, J Stougaard

NATURE　425　(6958)　637-640　2003/10

DOI： 10.1038/nature02045 　

ISSN： 0028-0836
A novel male-sterile mutant of Arabidopsis thaliana, faceless pollen-1, produces pollen with a smooth surface and an acetolysis-sensitive exine

T Ariizumi, K Hatakeyama, K Hinata, S Sato, T Kato, S Tabata, K Toriyama

PLANT MOLECULAR BIOLOGY　53　(1)　107-116　2003/09

DOI： 10.1023/B:PLAN.0000009269.97773.70 　

ISSN： 0167-4412
Complete genome structure of Gloeobacter violaceus PCC 7421, a cyanobacterium that lacks thylakoids. International-journal

Yasukazu Nakamura, Takakazu Kaneko, Shusei Sato, Mamoru Mimuro, Hideaki Miyashita, Tohru Tsuchiya, Shigemi Sasamoto, Akiko Watanabe, Kumiko Kawashima, Yoshie Kishida, Chiaki Kiyokawa, Mitsuyo Kohara, Midori Matsumoto, Ai Matsuno, Naomi Nakazaki, Sayaka Shimpo, Chie Takeuchi, Manabu Yamada, Satoshi Tabata

DNA research : an international journal for rapid publication of reports on genes and genomes　10　(4)　137-45　2003/08/31

DOI： 10.1093/dnares/10.4.137 　

ISSN： 1340-2838
Complete genome structure of Gloeobacter violaceus PCC 7421, a cyanobacterium that lacks thylakoids (supplement). International-journal

Yasukazu Nakamura, Takakazu Kaneko, Shusei Sato, Mamoru Mimuro, Hideaki Miyashita, Tohru Tsuchiya, Shigemi Sasamoto, Akiko Watanabe, Kumiko Kawashima, Yoshie Kishida, Chiaki Kiyokawa, Mitsuyo Kohara, Midori Matsumoto, Ai Matsuno, Naomi Nakazaki, Sayaka Shimpo, Chie Takeuchi, Manabu Yamada, Satoshi Tabata

DNA research : an international journal for rapid publication of reports on genes and genomes　10　(4)　181-201　2003/08/31

DOI： 10.1093/dnares/10.4.181 　

ISSN： 1340-2838
The type-A response regulator, ARR15, acts as a negative regulator in the cytokinin-mediated signal transduction in Arabidopsis thaliana

T Kiba, H Yamada, S Sato, T Kato, S Tabata, T Yamashino, T Mizuno

PLANT AND CELL PHYSIOLOGY　44　(8)　868-874　2003/08

DOI： 10.1093/pcp/pcg108 　

ISSN： 0032-0781
A HEAT-repeats containing protein, IaiH, stabilizes the iron-sulfur cluster bound to the cyanobacterial IscA homologue, IscA2

K Morimoto, S Sato, S Tabata, M Nakai

JOURNAL OF BIOCHEMISTRY　134　(2)　211-217　2003/08

DOI： 10.1093/jb/mvg131 　

ISSN： 0021-924X
Structural analysis of a Lotus japonicus genome. IV. Sequence features and mapping of seventy-three TAC clones which cover the 7.5 mb regions of the genome. International-journal

Erika Asamizu, Tomohiko Kato, Shutsei Sato, Yasukazu Nakamura, Takakazu Kaneko, Satoshi Tabata

DNA research : an international journal for rapid publication of reports on genes and genomes　10　(3)　115-22　2003/06/30

DOI： 10.1093/dnares/10.3.115 　

ISSN： 1340-2838
Monitoring expression profiles of Arabidopsis gene expression during rehydration process after dehydration using ca 7000 full-length cDNA microarray. International-journal Peer-reviewed

Youko Oono, Motoaki Seki, Tokihiko Nanjo, Mari Narusaka, Miki Fujita, Rie Satoh, Masakazu Satou, Tetsuya Sakurai, Junko Ishida, Kenji Akiyama, Kei Iida, Kyonoshin Maruyama, Shinobu Satoh, Kazuko Yamaguchi-Shinozaki, Kazuo Shinozaki

The Plant journal : for cell and molecular biology　34　(6)　868-87　2003/06

ISSN： 0960-7412

More details Close

Plants respond and adapt to drought stress in order to survive under stress conditions. Several genes that respond to drought at the transcriptional level have been described, but there are few reports on genes involved in the recovery from dehydration. Analysis of rehydration-inducible genes should help not only to understand the molecular mechanisms of stress responses in higher plants, but also to improve the stress tolerance of crops by gene manipulation. We used a full-length cDNA microarray containing ca. 7000 Arabidopsis full-length cDNAs and identified 152 rehydration-inducible genes. Venn diagram analysis showed relationship of the rehydration-inducible genes to proline-inducible and water-treatment-inducible genes. Among the 152 rehydration-inducible genes, 58 genes contained the ACTCAT sequence involved in proline- and hypoosmolarity-inducible gene expression in their promoter regions, suggesting that ACTCAT sequence is a major cis-acting element involved in rehydration-inducible gene expression, and that some novel cis-acting elements are involved in rehydration-inducible gene expression. Functional analysis of rehydration-inducible and rehydration-repressed genes revealed their functions not only in the release from a stressed status but also in the recovery of growth in plants.
A link between circadian-controlled bHLH factors and the APRR1/TOC1 quintet in Arabidopsis thaliana

T Yamashino, A Matsushika, T Fujimori, S Sato, T Kato, S Tabata, T Mizuno

PLANT AND CELL PHYSIOLOGY　44　(6)　619-629　2003/06

DOI： 10.1093/pcp/pcg078 　

ISSN： 0032-0781
A cluster of genes encodes the two types of chalcone isomerase involved in the biosynthesis of general flavonoids and legume-specific 5-deoxy(iso)flavonoids in Lotus japonicus. International-journal

Norimoto Shimada, Toshio Aoki, Shusei Sato, Yasukazu Nakamura, Satoshi Tabata, Shin-ichi Ayabe

Plant physiology　131　(3)　941-51　2003/03

DOI： 10.1104/pp.004820 　

ISSN： 0032-0889
Structural analysis of a Lotus japonicus genome. III. Sequence features and mapping of sixty-two TAC clones which cover the 6.7 Mb regions of the genome. International-journal

Takakazu Kaneko, Erika Asamizu, Tomohiko Kato, Shusei Sato, Yasukazu Nakamura, Satoshi Tabata

DNA research : an international journal for rapid publication of reports on genes and genomes　10　(1)　27-33　2003/02/28

DOI： 10.1093/dnares/10.1.27 　

ISSN： 1340-2838
Genetic Linkage Map of the Model Legume Lotus japonicus

K. Harada, M. Hayashi, S. Sato

Biotechnology in Agriculture and Forestry　167-182　2003
Publisher: Springer Berlin Heidelberg
DOI： 10.1007/978-3-662-05036-1_11 　

ISSN： 0934-943X
Characterization of APRR9 implicated in circadian rhythms in Arabidopsis thaliana Peer-reviewed

A Matsushika, S Ito, T Yamashino, T Kato, S Sato, S Tabata, T Mizuno

PLANT AND CELL PHYSIOLOGY　44　S34-S34　2003

DOI： 10.14841/jspp.2003.0.39.0 　

ISSN： 0032-0781
Complete genomic sequence of nitrogen-fixing symbiotic bacterium Bradyrhizobium japonicum USDA110. International-journal

Takakazu Kaneko, Yasukazu Nakamura, Shusei Sato, Kiwamu Minamisawa, Toshiki Uchiumi, Shigemi Sasamoto, Akiko Watanabe, Kumi Idesawa, Mayumi Iriguchi, Kumiko Kawashima, Mitsuyo Kohara, Midori Matsumoto, Sayaka Shimpo, Hisae Tsuruoka, Tsuyuko Wada, Manabu Yamada, Satoshi Tabata

DNA research : an international journal for rapid publication of reports on genes and genomes　9　(6)　189-97　2002/12/31

DOI： 10.1093/dnares/9.6.189 　

ISSN： 1340-2838
Complete genomic sequence of nitrogen-fixing symbiotic bacterium Bradyrhizobium japonicum USDA110 (supplement). International-journal

Takakazu Kaneko, Yasukazu Nakamura, Shusei Sato, Kiwamu Minamisawa, Toshiki Uchiumi, Shigemi Sasamoto, Akiko Watanabe, Kumi Idesawa, Mayumi Iriguchi, Kumiko Kawashima, Mitsuyo Kohara, Midori Matsumoto, Sayaka Shimpo, Hisae Tsuruoka, Tsuyuko Wada, Manabu Yamada, Satoshi Tabata

DNA research : an international journal for rapid publication of reports on genes and genomes　9　(6)　225-56　2002/12/31

DOI： 10.1093/dnares/9.6.225 　

ISSN： 1340-2838
Phosphatidylglycerol is essential for the development of thylakoid membranes in Arabidopsis thaliana

M Hagio, Sakurai, I, S Sato, T Kato, S Tabata, H Wada

PLANT AND CELL PHYSIOLOGY　43　(12)　1456-1464　2002/12

DOI： 10.1093/pcp/pcf185 　

ISSN： 0032-0781
Involvement of xylem sap zeatin-O-glucoside in cucumber shoot greening Peer-reviewed

Chihiro Kato, Hisashi Kato, Tadao Asami, Shigeo Yoshida, Hibiki Noda, Hiroshi Kamada, Shinobu Satoh

Plant Physiology and Biochemistry　40　(11)　949-954　2002/11
Publisher: Elsevier BV
DOI： 10.1016/s0981-9428(02)01458-4 　

ISSN： 0981-9428
Expression of symbiotic and nonsymbiotic globin genes responding to microsymbionts on Lotus japonicus

T Uchiumi, Y Shimoda, T Tsuruta, Y Mukoyoshi, A Suzuki, K Senoo, S Sato, T Kato, S Tabata, S Higashi, M Abe

PLANT AND CELL PHYSIOLOGY　43　(11)　1351-1358　2002/11

DOI： 10.1093/pcp/pcf165 　

ISSN： 0032-0781
Shoot control of root development and nodulation is mediated by a receptor-like kinase

L Krusell, LH Madsen, S Sato, G Aubert, A Genua, K Szczyglowski, G Duc, T Kaneko, S Tabata, F de Bruijn, E Pajuelo, N Sandal, J Stougaard

NATURE　420　(6914)　422-426　2002/11

DOI： 10.1038/nature01207 　

ISSN： 0028-0836
Complete genome structure of the thermophilic cyanobacterium Thermosynechococcus elongatus BP-1. International-journal

Yasukazu Nakamura, Takakazu Kaneko, Shusei Sato, Masahiko Ikeuchi, Hiroshi Katoh, Shigemi Sasamoto, Akiko Watanabe, Mayumi Iriguchi, Kumiko Kawashima, Takaharu Kimura, Yoshie Kishida, Chiaki Kiyokawa, Mitsuyo Kohara, Midori Matsumoto, Ai Matsuno, Naomi Nakazaki, Sayaka Shimpo, Masako Sugimoto, Chie Takeuchi, Manabu Yamada, Satoshi Tabata

DNA research : an international journal for rapid publication of reports on genes and genomes　9　(4)　123-30　2002/08/31

DOI： 10.1093/dnares/9.4.123 　

ISSN： 1340-2838
Complete genome structure of the thermophilic cyanobacterium Thermosynechococcus elongatus BP-1 (supplement). International-journal

Yasukazu Nakamura, Takakazu Kaneko, Shusei Sato, Masahiko Ikeuchi, Hiroshi Katoh, Shigemi Sasamoto, Akiko Watanabe, Mayumi Iriguchi, Kumiko Kawashima, Takaharu Kimura, Yoshie Kishida, Chiaki Kiyokawa, Mitsuyo Kohara, Midori Matsumoto, Ai Matsuno, Naomi Nakazaki, Sayaka Shimpo, Masako Sugimoto, Chie Takeuchi, Manabu Yamada, Satoshi Tabata

DNA research : an international journal for rapid publication of reports on genes and genomes　9　(4)　135-48　2002/08/31

DOI： 10.1093/dnares/9.4.135 　

ISSN： 1340-2838
Construction of a saturated genome map model legume Lotus japonicus using HEGS (high efficiency genome scanning) in half a year

WANG Xinwang, SHIMIZU Akifumi, MURAKAMI Yasuhiro, SATO Shusei, TABATA Satoshi, KAWASAKI Shinji

GI　4　262-262　2002/08/26
Publisher: Japanese Society for Bioinformatics
DOI： 10.11234/gi1990.13.539 　

ISSN： 1344-7629
A genetic linkage map of the model legume Lotus japonicus and strategies for fast mapping of new loci

N Sandal, L Krusell, S Radutoiu, M Olbryt, A Pedrosa, S Stracke, S Sato, T Kato, S Tabata, M Parniske, A Bachmair, T Ketelsen, J Stougaard

GENETICS　161　(4)　1673-1683　2002/08

ISSN： 0016-6731
A plant receptor-like kinase required for both bacterial and fungal symbiosis Peer-reviewed

S Stracke, C Kistner, S Yoshida, L Mulder, S Sato, T Kaneko, S Tabata, N Sandal, J Stougaard, K Szczyglowski, M Parniske

NATURE　417　(6892)　959-962　2002/06

DOI： 10.1038/nature00841 　

ISSN： 0028-0836
Structural analysis of a Lotus japonicus genome. II. Sequence features and mapping of sixty-five TAC clones which cover the 6.5-mb regions of the genome. International-journal

Yasukazu Nakamura, Takakazu Kaneko, Erika Asamizu, Tomohiko Kato, Shusei Sato, Satoshi Tabata

DNA research : an international journal for rapid publication of reports on genes and genomes　9　(2)　63-70　2002/04/30

DOI： 10.1093/dnares/9.2.63 　

ISSN： 1340-2838
Phase state of a steel plate caused by the action of distributed heat sources Peer-reviewed

Silke Stracke, Catherine Kistner, Satoko Yoshida, Lonneke Mulder, Shusel Sato, Takakazu Kaneko, Satoshi Tabata, Niels Sandal, Jens Stougaard, Krzysztof Szczyglowski, Martin Parniske

Materials Science　38　(2)　214-219　2002

DOI： 10.1023/A:1020938119828 　

ISSN： 1068-820X
Predictive factors associated with long-term survival in patients with neuroendocrine tumors of the pancreas Peer-reviewed

Silke Stracke, Catherine Kistner, Satoko Yoshida, Lonneke Mulder, Shusel Sato, Takakazu Kaneko, Satoshi Tabata, Niels Sandal, Jens Stougaard, Krzysztof Szczyglowski, Martin Parniske

Annals of Surgical Oncology　9　(9)　855-862　2002

ISSN： 1068-9265
Identifying and characterizing plastidic 2-oxoglutarate/malate and dicarboxylate transporters in Arabidopsis thaliana

Mitsutaka Taniguchi, Yojiro Taniguchi, Michio Kawasaki, Satomi Takeda, Tomohiko Kato, Shusei Sato, Satoshi Tabata, Hiroshi Miyake, Tatsuo Sugiyama

Plant and Cell Physiology　43　(7)　706-717　2002
Publisher: Oxford University Press
DOI： 10.1093/pcp/pcf109 　

ISSN： 0032-0781
Structural analysis of a Lotus japonicus genome. I. Sequence features and mapping of fifty-six TAC clones which cover the 5.4 Mb regions of the genome

S Sato, T Kaneko, Y Nakamura, E Asamizu, T Kato, S Tabata

DNA RESEARCH　8　(6)　311-318　2001/12

DOI： 10.1093/dnares/8.6.311 　

ISSN： 1340-2838
Construction of a genetic linkage map of the model legume Lotus japonicus using an intraspecific F-2 population

M Hayashi, A Miyahara, S Sato, T Kato, M Yoshikawa, M Taketa, M Hayashi, A Pedrosa, R Onda, H Imaizumi-Anraku, A Bachmair, N Sandal, J Stougaard, Y Murooka, S Tabata, S Kawasaki, M Kawaguchi, K Harada

DNA RESEARCH　8　(6)　301-310　2001/12

DOI： 10.1093/dnares/8.6.301 　

ISSN： 1340-2838
The complete genome sequence of Arabidopsis thaliana

Sato, S., Tabata, S.

Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme　46　(1)　2001
ARR1, a transcription factor for genes immediately responsive to cytokinins

Sakai, H., Honma, T., Takashi, A., Sato, S., Kato, T., Tabata, S., Oka, A.

Science　294　(5546)　2001

DOI： 10.1126/science.1065201 　
Role of the putative membrane-bound endo-1,4-β-glucanase KORRIGAN in cell elongation and cellulose synthesis in Arabidopsis thaliana

Shigeru Sato, Tomohiko Kato, Koichi Kakegawa, Tadashi Ishii, Yao-Guang Liu, Tatsuya Awano, Keiji Takabe, Yoshiharu Nishiyama, Shigenori Kuga, Shusei Sato, Yasukazu Nakamura, Satoshi Tabata, Daisuke Shibata

Plant and Cell Physiology　42　(3)　251-263　2001
Publisher: Japanese Society of Plant Physiologists
DOI： 10.1093/pcp/pce045 　

ISSN： 0032-0781
The AHK4 gene involved in the cytokinin-signaling pathway as a direct receptor molecule in Arabidopsis thaliana

Chiharu Ueguchi, Shusei Sato, Tomohiko Kato, Satoshi Tabata

Plant and Cell Physiology　42　(7)　751-755　2001
Publisher: Japanese Society of Plant Physiologists
DOI： 10.1093/pcp/pce094 　

ISSN： 0032-0781
Functional genomics in Arabidopsis thaliana

Sato, S., Kato, T., Tabata, S.

Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme　46　(16 Suppl)　1506-1511　2001

ISSN： 0039-9450
Complete structure of the chloroplast genome of a legume, Lotus japonicus

T Kato, T Kaneko, S Sato, Y Nakamura, S Tabata

DNA RESEARCH　7　(6)　323-330　2000/12

DOI： 10.1093/dnares/7.6.323 　

ISSN： 1340-2838
Complete genome structure of the nitrogen-fixing symbiotic bacterium Mesorhizobium loti

T Kaneko, Y Nakamura, S Sato, E Asamizu, T Kato, S Sasamoto, A Watanabe, K Idesawa, A Ishikawa, K Kawashima, T Kimura, Y Kishida, C Kiyokawa, M Kohara, M Matsumoto, A Matsuno, Y Mochizuki, S Nakayama, N Nakazaki, S Shimpo, M Sugimoto, C Takeuchi, M Yamada, S Tabata

DNA RESEARCH　7　(6)　331-338　2000/12

DOI： 10.1093/dnares/7.6.331 　

ISSN： 1340-2838
Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana

S Tabata, T Kaneko, Y Nakamura, H Kotani, T Kato, E Asamizu, N Miyajima, S Sasamoto, T Kimura, T Hosouchi, K Kawashima, M Kohara, M Matsumoto, A Matsuno, A Muraki, S Nakayama, N Nakazaki, K Naruo, S Okumura, S Shinpo, C Takeuchi, T Wada, A Watanabe, M Yamada, M Yasuda, S Sato, M de la Bastide, E Huang, L Spiegel, L Gnoj, A O'Shaughnessy, R Preston, K Habermann, J Murray, D Johnson, T Rohlrng, J Nelson, T Stoneking, K Pepin, J Spieth, M Sekhon, J Armstrong, M Becker, E Belter, H Cordum, M Cordes, L Courtney, W Courtney, M Dante, H Du, J Edwards, J Fryman, B Haakensen, E Lamar, P Latreille, S Leonard, R Meyer, E Mulvaney, P Ozersky, A Riley, C Strowmatt, C Wagner-McPherson, A Wollam, M Yoakum, M Bell, N Dedhia, L Parnell, R Shah, M Rodriguez, LH See, D Vil, J Baker, K Kirchoff, K Toth, L King, A Bahret, B Miller, M Marra, R Martienssen, WR McCombie, RK Wilson, G Murphy, Bancroft, I, G Volckaert, R Wambutt, A Dusterhoft, W Stiekema, T Pohl, KD Entian, N Terryn, N Hartley, E Bent, S Johnson, SA Langham, B McCullagh, J Robben, B Grymonprez, W Zimmermann, U Ramsperger, H Wedler, K Balke, E Wedler, S Peters, M van Staveren, W Dirkse, P Mooijman, RK Lankhorst, T Weitzenegger, G Bothe, M Rose, J Hauf, S Berneiser, S Hempel, M Feldpausch, S Lamberth, R Villarroel, J Gielen, W Ardiles, O Bents, K Lemcke, G Kolesov, K Mayer, S Rudd, H Schoof, C Schueller, P Zaccaria, HW Mewes, M Bevan

NATURE　408　(6814)　823-826　2000/12

DOI： 10.1038/35048507 　

ISSN： 0028-0836
Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana

M Salanoubat, K Lemcke, M Rieger, W Ansorge, M Unseld, B Fartmann, G Valle, H Blocker, M Perez-Alonso, B Obermaier, M Delseny, M Boutry, LA Grivell, R Mache, P Puigdomenech, De Simone, V, N Choisne, F Artiguenave, C Robert, P Brottier, P Wincker, L Cattolico, J Weissenbach, W Saurin, F Quetier, M Schafer, S Muller-Auer, C Gabel, M Fuchs, Benes, V, E Wurmbach, H Drzonek, H Erfle, N Jordan, S Bangert, R Wiedelmann, H Kranz, H Voss, R Holland, P Brandt, G Nyakatura, A Vezzi, M D'Angelo, A Pallavicini, S Toppo, B Simionati, A Conrad, K Hornischer, G Kauer, TH Lohnert, G Nordsiek, J Reichelt, M Scharfe, O Schon, M Bargues, J Terol, J Climent, P Navarro, C Collado, A Perez-Perez, B Ottenwalder, D Duchemin, R Cooke, M Laudie, C Berger-Llauro, B Purnelle, D Masuy, M de Haan, AC Maarse, JP Alcaraz, A Cottet, E Casacuberta, A Monfort, A Argiriou, M Flores, R Liguori, D Vitale, G Mannhaupt, D Haase, H Schoof, S Rudd, P Zaccaria, HW Mewes, KFX Mayer, S Kaul, CD Town, HL Koo, LJ Tallon, J Jenkins, T Rooney, M Rizzo, A Walts, T Utterback, CY Fujii, TP Shea, TH Creasy, B Haas, R Maiti, DY Wu, J Peterson, S Van Aken, G Pai, J Militscher, P Sellers, JE Gill, TV Feldblyum, D Preuss, XY Lin, WC Nierman, SL Salzberg, O White, JC Venter, CM Fraser, T Kaneko, Y Nakamura, S Sato, T Kato, E Asamizu, S Sasamoto, T Kimura, K Idesawa, K Kawashima, Y Kishida, C Kiyokawa, M Kohara, M Matsumoto, A Matsuno, A Muraki, S Nakayama, N Nakazaki, S Shinpo, C Takeuchi, T Wada, A Watanabe, M Yamada, M Yasuda, S Tabata

NATURE　408　(6814)　820-822　2000/12

DOI： 10.1038/35048706 　

ISSN： 0028-0836
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana

S Kaul, HL Koo, J Jenkins, M Rizzo, T Rooney, LJ Tallon, T Feldblyum, W Nierman, MI Benito, XY Lin, CD Town, JC Venter, CM Fraser, S Tabata, Y Nakamura, T Kaneko, S Sato, E Asamizu, T Kato, H Kotani, S Sasamoto, Ecker, JR, A Theologis, NA Federspiel, CJ Palm, BI Osborne, P Shinn, AB Conway, VS Vysotskaia, K Dewar, L Conn, CA Lenz, CJ Kim, NF Hansen, SX Liu, E Buehler, H Altafi, H Sakano, P Dunn, B Lam, PK Pham, Q Chao, M Nguyen, GX Yu, HM Chen, A Southwick, JM Lee, M Miranda, MJ Toriumi, RW Davis, R Wambutt, G Murphy, A Dusterhoft, W Stiekema, T Pohl, KD Entian, N Terryn, G Volckaert, M Salanoubat, N Choisne, M Rieger, W Ansorge, M Unseld, B Fartmann, G Valle, F Artiguenave, J Weissenbach, F Quetier, RK Wilson, M de la Bastide, M Sekhon, E Huang, L Spiegel, L Gnoj, K Pepin, J Murray, D Johnson, K Habermann, N Dedhia, L Parnell, R Preston, L Hillier, E Chen, M Marra, R Martienssen, WR McCombie, K Mayer, O White, M Bevan, K Lemcke, TH Creasy, C Bielke, B Haas, D Haase, R Maiti, S Rudd, J Peterson, H Schoof, D Frishman, B Morgenstern, P Zaccaria, M Ermolaeva, M Pertea, J Quackenbush, N Volfovsky, DY Wu, TM Lowe, SL Salzberg, HW Mewes, S Rounsley, D Bush, S Subramaniam, Levin, I, S Norris, R Schmidt, A Acarkan, Bancroft, I, F Quetier, A Brennicke, JA Eisen, T Bureau, BA Legault, QH Le, N Agrawal, Z Yu, R Martienssen, GP Copenhaver, S Luo, CS Pikaard, D Preuss, IT Paulsen, M Sussman, AB Britt, DA Selinger, R Pandey, DW Mount, VL Chandler, RA Jorgensen, C Pikaard, G Juergens, EM Meyerowitz, A Theologis, J Dangl, JDG Jones, M Chen, J Chory, MC Somerville

NATURE　408　(6814)　796-815　2000/12

DOI： 10.1038/35048692 　

ISSN： 0028-0836

eISSN： 1476-4687
Complete genome structure of the nitrogen-fixing symbiotic bacterium Mesorhizobium loti (supplement)

T Kaneko, Y Nakamura, S Sato, E Asamizu, T Kato, S Sasamoto, A Watanabe, K Idesawa, A Ishikawa, K Kawashima, T Kimura, Y Kishida, C Kiyokawa, H Kohara, M Matsumoto, A Matsuno, Y Mochizuki, S Nakayama, N Nakazaki, S Shimpo, M Sugimoto, C Takeuchi, M Yamada, S Tabata

DNA RESEARCH　7　(6)　381-406　2000/12

ISSN： 1340-2838
Chloroplast development in Arabidopsis thaliana requires the nuclear-encoded transcription factor Sigma B

Y Shirano, H Shimada, K Kanamaru, M Fujiwara, K Tanaka, H Takahashi, K Unno, S Sato, S Tabata, H Hayashi, C Miyake, A Yokota, D Shibata

FEBS LETTERS　485　(2-3)　178-182　2000/11

DOI： 10.1016/S0014-5793(00)02216-X 　

ISSN： 0014-5793
Activation tagging in Arabidopsis

D Weigel, JH Ahn, MA Blazquez, JO Borevitz, SK Christensen, C Fankhauser, C Ferrandiz, Kardailsky, I, EJ Malancharuvil, MM Neff, JT Nguyen, S Sato, ZY Wang, YJ Xia, RA Dixon, MJ Harrison, CJ Lamb, MF Yanofsky, J Chory

PLANT PHYSIOLOGY　122　(4)　1003-1013　2000/04

ISSN： 0032-0889
hosoba toge toge, a syndrome caused by a large chromosomal deletion associated with a T-DNA insertion in Arabidopsis

Hidetaka Kaya, Shusei Sato, Satoshi Tabata, Yasushi Kobayashi, Masaki Iwabuchi, Takashi Araki

Plant and Cell Physiology　41　(9)　1055-1066　2000
Publisher: Japanese Society of Plant Physiologists
DOI： 10.1093/pcp/pcd032 　

ISSN： 0032-0781
Structural analysis of Arabidopsis thaliana chromosome 5. X. Sequence features of the regions of 3,076,755 bp covered by sixty P1 and TAC clones

Shusei Sato, Yasukazu Nakamura, Takakazu Kaneko, Tomohiko Katoh, Erika Asamizu, Hirokazu Kotani, Satoshi Tabata

DNA Research　7　(1)　31-63　2000
Publisher: Universal Academy Press Inc.
DOI： 10.1093/dnares/7.1.31 　

ISSN： 1340-2838
Structural analysis of Arabidopsis thaliana chromosome 3. II. Sequence features of the 4,251,695 bp regions covered by 90 P1, TAC and BAC clones

Takakazu Kaneko, Tomohiko Katoh, Shusei Sato, Yasukazu Nakamura, Erika Asamizu, Satoshi Tabata

DNA Research　7　(3)　217-221　2000
Publisher: Universal Academy Press Inc.
DOI： 10.1093/dnares/7.3.217 　

ISSN： 1340-2838
Structural analysis of Arabidopsis thaliana chromosome 3. I. Sequence features of the regions of 4,504,864 bp covered by sixty P1 and TAC clones

Shusei Sato, Yasukazu Nakamura, Takakazu Kaneko, Tomohiko Katoh, Erika Asamizu, Satoshi Tabata

DNA Research　7　(2)　131-135　2000
Publisher: Universal Academy Press Inc.
DOI： 10.1093/dnares/7.2.131 　

ISSN： 1340-2838
Generation of 7137 non-redundant expressed sequence tags from a legume, Lotus japonicus

Erika Asamizu, Yasukazu Nakamura, Shusei Sato, Satoshi Tabata

DNA Research　7　(2)　127-130　2000
Publisher: Universal Academy Press Inc.
DOI： 10.1093/dnares/7.2.127 　

ISSN： 1340-2838
A large scale analysis of cDNA in Arabidopsis thaliana: Generation of 12,028 non-redundant expressed sequence tags from normalized and size-selected cDNA libraries

Erika Asamizu, Yasukazu Nakamura, Shusei Sato, Satoshi Tabata

DNA Research　7　(3)　175-180　2000
Publisher: Universal Academy Press Inc.
DOI： 10.1093/dnares/7.3.175 　

ISSN： 1340-2838
Characterization of Ce-atl-1, an ATM-like gene from Caenorhabditis elegans

H. Aoki, S. Sato, T. Takanami, T. Ishihara, I. Katsura, H. Takahashi, A. Higashitani

Molecular and General Genetics　264　(1-2)　119-126　2000
Publisher: Springer Verlag
DOI： 10.1007/s004380000291 　

ISSN： 0026-8925
Structural analysis of Arabidopsis thaliana chromosome 5. IX. Sequence features of the regions of 1,011,550 bp covered by seventeen P1 and TAG clones

Takakazu Kaneko, Tomohiko Katoh, Shusei Sato, Yasukazu Nakamura, Erika Asamizu, Hirokazu Kotani, Nobuyuki Miyajima, Satoshi Tabata

DNA Research　6　(3)　183-195　1999
Publisher: Universal Academy Press Inc.
DOI： 10.1093/dnares/6.3.183 　

ISSN： 1340-2838
Complete structure of the chloroplast genome of Arabidopsis thaliana

Shusei Sato, Yasukazu Nakamura, Takakazu Kaneko, Erika Asamizu, Satoshi Tabata

DNA Research　6　(5)　283-290　1999
Publisher: Universal Academy Press Inc.
DOI： 10.1093/dnares/6.5.283 　

ISSN： 1340-2838
A sequence-ready contig map of the top arm of Arabidopsis thaliana chromosome 3

Shusei Sato, Takakazu Kaneko, Hirokazu Kotani, Reiko Hayashi, Yao-Guang Liu, Daisuke Shibata, Satoshi Tabata

DNA Research　6　(2)　117-121　1999
Publisher: Universal Academy Press Inc.
DOI： 10.1093/dnares/6.2.117 　

ISSN： 1340-2838
A large scale structural analysis of cDNAs in a unicellular green alga, Chlamydomonas reinhardtii. I. Generation of 3433 non-redundant expressed sequence tags

Erika Asamizu, Yasukazu Nakamura, Shusei Sato, Hideya Fukuzawa, Satoshi Tabata

DNA Research　6　(6)　369-373　1999
Publisher: Universal Academy Press Inc.
DOI： 10.1093/dnares/6.6.369 　

ISSN： 1340-2838
Annotation and Presentation Systems for Arabidopsis Genome Sequencing Project at Kazusa DNA Research Institute

Nakamura Yasukazu, Sato Shusei, Tabata Satoshi

GI　9　361-362　1998
Publisher: Japanese Society for Bioinformatics
DOI： 10.11234/gi1990.9.361 　

ISSN： 0919-9454
Structural analysis of Arabidopsis thaliana chromosome 5. VI. sequence features of the regions of 1,367,185 bp covered by 19 physically assigned P1 and TAC clones

Hirokazu Kotani, Yasukazu Nakamura, Shusei Sato, Erika Asamizu, Takakazu Kaneko, Nobuyuki Miyajima, Satoshi Tabata

DNA Research　5　(3)　203-216　1998
Publisher: Universal Academy Press Inc.
DOI： 10.1093/dnares/5.3.203 　

ISSN： 1340-2838
Structural analysis of arabidopsis thaliana chromosome 5. VII. Sequence features of the regions of 1,013,767 bp covered by sixteen physically assigned P1 and TAC clones

Yasukazu Nakamura, Shusei Sato, Erika Asamizu, Takakazu Kaneko, Hirokazu Kotani, Nobuyuki Miyajima, Satoshi Tabata

DNA Research　5　(5)　297-308　1998
Publisher: Universal Academy Press Inc.
DOI： 10.1093/dnares/5.5.297 　

ISSN： 1340-2838
Structural analysis of Arabidopsis thaliana chromosome 5. IV. Sequence features of the regions of 1,456,315 bp covered by nineteen physically assigned P1 and TAC clones

Shusei Sato, Takakazu Kaneko, Hirokazu Kotani, Yasukazu Nakamura, Erika Asamizu, Nobuyuki Miyajima, Satoshi Tabata

DNA Research　5　(1)　41-54　1998
Publisher: Universal Academy Press Inc.
DOI： 10.1093/dnares/5.1.41 　

ISSN： 1340-2838
Structural analysis of Arabidopsis thaliana chromosome 5. VIII. Sequence features of the regions of 1,081,958 bp covered by seventeen physically assigned PI and TAC clones

Erika Asamizu, Shusei Sato, Takakazu Kaneko, Yasukazu Nakamura, Hirokazu Kotani, Nobuyuki Miyajima, Satoshi Tabata

DNA Research　5　(6)　379-391　1998
Publisher: Universal Academy Press Inc.
DOI： 10.1093/dnares/5.6.379 　

ISSN： 1340-2838
Structural analysis of Arabidopsis thaliana chromosome 5. V. Sequence features of the regions of 1,381,565 bp covered by twenty one physically assigned P1 and TAC clones

Takakazu Kaneko, Hirokazu Kotani, Yasukazu Nakamura, Shusei Sato, Erika Asamizu, Nobuyuki Miyajima, Satoshi Tabata

DNA Research　5　(2)　131-145　1998
Publisher: Universal Academy Press Inc.
DOI： 10.1093/dnares/5.2.131 　

ISSN： 1340-2838
Characterization of a Caenorhabditis elegans recA-like gene Ce-rdh-1 involved in meiotic recombination

Takako Takanami, Shusei Sato, Takeshi Ishihara, Isao Katsura, Hideyuki Takahashi, Atsushi Higashitani

DNA Research　5　(6)　373-377　1998
Publisher: Universal Academy Press Inc.
DOI： 10.1093/dnares/5.6.373 　

ISSN： 1340-2838
A physical map of Arabidopsis thaliana chromosome 3 represented by two contigs of CIC YAC, P1, TAC and BAC clones

Shusei Sato, Hirokazu Kotani, Reiko Hayashi, Yao-Guang Liu, Daisuke Shibata, Satoshi Tabata

DNA Research　5　(3)　163-168　1998
Publisher: Universal Academy Press Inc.
DOI： 10.1093/dnares/5.3.163 　

ISSN： 1340-2838
Whole genome analysis of a cyanobacterium Synechocystis sp. PCC6803

SATO Shusei, TABATA Satoshi

Seibutsu Butsuri　37　(4)　165-167　1997/07/25
Publisher: The Biophysical Society of Japan General Incorporated Association
DOI： 10.2142/biophys.37.165 　

ISSN： 0582-4052
Overexpression of an Arabidopsis thaliana high-affinity phosphate transporter gene in tobacco cultured cells enhances cell growth under phosphate-limited conditions Peer-reviewed

N Mitsukawa, S Okumura, Y Shirano, S Sato, T Kato, S Harashima, D Shibata

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA　94　(13)　7098-7102　1997/06

ISSN： 0027-8424
Genome analysis of Arabidopsis thaliana

Sato, S., Kotani, H., Tabata, S.

Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme　42　(17 Suppl)　3078-3080　1997/01/01

ISSN： 0039-9450
Structural analysis of Arabidopsis thaliana chromosome 5. II. Sequence features of the regions of 1,044,062 bp covered by thirteen physically assigned PI clones

Hirokazu Kotani, Yasukazu Nakamura, Shusei Sato, Takakazu Kaneko, Erika Asamizu, Nobuyuki Miyajima, Satoshi Tabata

DNA Research　4　(4)　291-300　1997

DOI： 10.1093/dnares/4.4.291 　

ISSN： 1340-2838
Structural analysis of Arabidopsis thaliana chromosome 5. I. Sequence features of the 1.6 Mb regions covered by twenty physically assigned PI clones

Shusei Sato, Hirokazu Kotani, Yasukazu Nakamura, Takakazu Kaneko, Erika Asamizu, Masanobu Fukami, Nobuyuki Miyajima, Satoshi Tabata

DNA Research　4　(3)　215-230　1997

DOI： 10.1093/dnares/4.3.215 　

ISSN： 1340-2838
Structural analysis of Arabidopsis thaliana Chromosome 5. III. Sequence features of the regions of 1,191,918 bp covered by seventeen physically assigned P1 clones

Yasukazu Nakamura, Shusei Sato, Takakazu Kaneko, Hirokazu Kotani, Erika Asamizu, Nobuyuki Miyajima, Satoshi Tabata

DNA Research　4　(6)　401-404　1997
Publisher: Universal Academy Press Inc.
DOI： 10.1093/dnares/4.6.401 　

ISSN： 1340-2838
A fine physical map of Arabidopsis thaliana chromosome 5: Construction of a sequence-ready contig map

Hirokazu Kotani, Shusei Sato, Masanobu Fukami, Tsutomu Hosouchi, Naomi Nakazaki, Satomi Okumura, Tsuyuko Wada, You-Guang Liu, Daisuke Shibata, Satoshi Tabata

DNA Research　4　(6)　371-378　1997
Publisher: Universal Academy Press Inc.
DOI： 10.1093/dnares/4.6.371 　

ISSN： 1340-2838
Sequence analysis of the genome of the unicellular cyanobacterium synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions (supplement)

Takakazu Kaneko, Shusei Sato, Hirokazu Kotani, Ayako Tanaka, Erika Asamizu, Yasukazu Nakamura, Nobuyuki Miyajima, Makoto Hirosawa, Masahiro Sugiura, Shigemi Sasamoto, Takaharu Kimura, Tsutomu Hosouchi, Ai Matsuno, Akiko Muraki, Naomi Nakazaki, Kaoru Naruo, Satomi Okumura, Sayaka Shimpo, Chie Takeuchi, Tsuyuko Wada, Akiko Watanabe, Manabu Yamada, Miho Yasuda, Satoshi Tabata

DNA Research　3　(3)　185-209　1996
Publisher: Universal Academy Press Inc.
DOI： 10.1093/dnares/3.3.185 　

ISSN： 1340-2838
Sequence analysis of the genome of the unicellular cyanobacterium synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions

Takakazu Kaneko, Shusei Sato, Hirokazu Kotani, Ayako Tanaka, Erika Asamizu, Yasukazu Nakamura, Nobuyuki Miyajima, Makoto Hirosawa, Masahiro Sugiura, Shigemi Sasamoto, Takaharu Kimura, Tsutomu Hosouchi, Ai Matsuno, Akiko Muraki, Naomi Nakazaki, Kaoru Naruo, Satomi Okumura, Sayaka Shimpo, Chie Takeuchi, Tsuyuko Wada, Akiko Watanabe, Manabu Yamada, Miho Yasuda, Satoshi Tabata

DNA Research　3　(3)　109-136　1996
Publisher: Universal Academy Press Inc.
DOI： 10.1093/dnares/3.3.109 　

ISSN： 1340-2838
Localization of mouse Rad51 and Lim15 proteins on meiotic chromosomes at late stages of prophase 1

Tomoatsu Ikeya, Akira Shinohara, Shusei Sato, Satoshi Tabata, Tomoko Ogawa

Genes to Cells　1　(4)　379-389　1996
Publisher: Blackwell Publishing Ltd.
DOI： 10.1046/j.1365-2443.1996.d01-249.x 　

ISSN： 1356-9597
Prediction of the coding sequences of unidentified human genes. III. The coding sequences of 40 new genes (KIAA0081-KIAA0120) deduced by analysis of cDNA clones from human cell line KG-1 (supplement).

Nagase, T., Miyajima, N., Tanaka, A., Sazuka, T., Seki, N., Sato, S., Tabata, S., Ishikawa, K., Kawarabayasi, Y., Kotani, H.

DNA research : an international journal for rapid publication of reports on genes and genomes　2　(1)　51-59　1995/01/01

DOI： 10.1093/dnares/2.1.51 　

ISSN： 1340-2838
Structural analysis of a recA-like gene in the genome of Arabidopsis thaliana

Shusei Sato, Yasuo Hotta, Satoshi Tabata

DNA Research　2　(2)　89-93　1995
Publisher: Universal Academy Press Inc.
DOI： 10.1093/dnares/2.2.89 　

ISSN： 1340-2838
Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. I. Sequence features in the 1 Mb region from map positions 64% to 92% of the genome

Takakazu Kaneko, Ayako Tanaka, Shusei Sato, Hirokazu Kotani, Takashi Sazuka, Nobuyuki Miyajima, Masahiro Sugiura, Satoshi Tabata

DNA Research　2　(4)　153-166　1995
Publisher: Universal Academy Press Inc.
DOI： 10.1093/dnares/2.4.153 　

ISSN： 1340-2838
Prediction of the coding sequences of unidentified human genes. III. The coding sequences of 40 new genes (KIAA0081-KIAA0120) deduced by analysis of cDNA clones from human cell line KG-1

Takahiro Nagase, Nobuyuki Miyajima, Ayako Tanaka, Takashi Sazuka, Naohiko Seki, Shusei Sato, Satoshi Tabata, Ken-Ichi Ishikawa, Yutaka Kawarabayasi, Hirokazu Kotani, Nobuo Nomura

DNA Research　2　(1)　37-43　1995
Publisher: Universal Academy Press Inc.
DOI： 10.1093/dnares/2.1.37 　

ISSN： 1340-2838
Expression profiles of a human gene identified as a structural homologue of meiosis-specific recA-like genes

Shusei Sato, Naohiko Seki, Yasuo Hotta, Satoshi Tabata

DNA Research　2　(4)　183-186　1995
Publisher: Universal Academy Press Inc.
DOI： 10.1093/dnares/2.4.183 　

ISSN： 1340-2838
Characterization of a mouse recA-like gene specifically expressed in testis

Shusei Sato, Toshiyuki Kobayashi, Yasuo Hotta, Satoshi Tabata

DNA Research　2　(3)　147-150　1995
Publisher: Universal Academy Press Inc.
DOI： 10.1093/dnares/2.3.147 　

ISSN： 1340-2838
Assignment of 82 known genes and gene clusters on the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803

Hirokazu Kotani, Ayako Tanaka, Takakazu Kaneko, Shusei Sato, Masahiro Sugiura, Satoshi Tabata

DNA Research　2　(3)　133-142　1995
Publisher: Universal Academy Press Inc.
DOI： 10.1093/dnares/2.3.133 　

ISSN： 1340-2838
Prediction of the coding sequences of unidentified human genes. II. The coding sequences of 40 new genes (KIAA0041-KIAA0080) deduced by analysis of cDNA clones from human cell line KG-1 (supplement).

Nomura, N., Nagase, T., Miyajima, N., Sazuka, T., Tanaka, A., Sato, S., Seki, N., Kawarabayasi, Y., Ishikawa, K., Tabata, S.

DNA research : an international journal for rapid publication of reports on genes and genomes　1　(5)　251-262　1994/12/01

DOI： 10.1093/dnares/1.5.251 　

ISSN： 1340-2838
Prediction of the coding sequences of unidentified human genes. I. The coding sequences of 40 new genes (KIAA0001-KIAA0040) deduced by analysis of randomly sampled cDNA clones from human immature myeloid cell line KG-1 (supplement).

N. Nomura, N. Miyajima, T. Sazuka, A. Tanaka, Y. Kawarabayasi, S. Sato, T. Nagase, N. Seki, K. Ishikawa, S. Tabata

DNA research : an international journal for rapid publication of reports on genes and genomes　1　(1)　47-56　1994

DOI： 10.1093/dnares/1.1.47 　

ISSN： 1340-2838
Apoptosis of murine large intestine in acute graft-versus-host disease after allogeneic bone marrow transplantation across minor histocompatibility barriers Peer-reviewed

Minako Suzuki, Yasuhiko Suzuki, Hiroshi Ikeda, Masahiko Koike, Masanao Nomura, Jun Tamura, Shusei Sato, Yasuo Hotta, Gen Itoh

Transplantation　57　(8)　1284-1287　1994

DOI： 10.1097/00007890-199404270-00029 　

ISSN： 0041-1337
IDENTIFICATION AND CHARACTERIZATION OF GENES INDUCED DURING SEXUAL-DIFFERENTIATION IN SCHIZOSACCHAROMYCES-POMBE

S SATO, H SUZUKI, U WIDYASTUTI, Y HOTTA, S TABATA

CURRENT GENETICS　26　(1)　31-37　1994

DOI： 10.1007/BF00326301 　

ISSN： 0172-8083

eISSN： 1432-0983
Prediction of the coding sequences of unidentified human genes. I. The coding sequences of 40 new genes (KIAA0001-KIAA0040) deduced by analysis of randomly sampled cDNA clones from human immature myeloid cell line KG-1

Nobuo Nomura, Nobuyuki Miyajima, Takashi Sazuka, Ayako Tanaka, Yutaka Kawarabayasi, Shusei Sato, Takahiro Nagase, Naohiko Seki, Ken-Ichi Ishikawa, Satoshi Tabata

DNA Research　1　(1)　27-35　1994
Publisher: Universal Academy Press Inc.
DOI： 10.1093/dnares/1.1.27 　

ISSN： 1340-2838
Prediction of the coding sequences of unidentified human genes. II. The coding sequences of 40 new genes (KIAA0041-KIAA0080) deduced by analysis of cDNA clones from human cell line KG-1

Nobuo Nomura, Takahiro Nagase, Nobuyuki Miyajima, Takashi Sazuka, Ayako Tanaka, Shusei Sato, Naohiko Seki, Yutaka Kawarabayasi, Ken-Ichi Ishikawa, Satoshi Tabata

DNA Research　1　(5)　223-229　1994
Publisher: Universal Academy Press Inc.
DOI： 10.1093/dnares/1.5.223 　

ISSN： 1340-2838
Characterization of cDNAs induced in meiotic prophase in lily microsporocytes

Toshiyuki Kobayashi, Etsuko Kobayashi, Shusei Sato, Yasuo Hotta, Nobuyuki Miyajima, Ayako Tanaka, Satoshi Tabata

DNA Research　1　(1)　15-26　1994
Publisher: Universal Academy Press Inc.
DOI： 10.1093/dnares/1.1.15 　

ISSN： 1340-2838
A physical map of the genome of a unicellular cyanobacterium Synechocystis sp. Strain PCC6803

Hirokazu Kotani, Takakazu Kaneko, Toru Matsubayashi, Shusei Sato, Masahiro Sugiura, Satoshi Tabata

DNA Research　1　(6)　303-307　1994
Publisher: Universal Academy Press Inc.
DOI： 10.1093/dnares/1.6.303 　

ISSN： 1340-2838
EVIDENCE OF MEIOSIS-SPECIFIC REGULATION OF GENE-EXPRESSION IN LILY MICROSPOROCYTES

S TABATA, S SATO, Y WATANABE, M YAMAMOTO, Y HOTTA

PLANT SCIENCE　89　(1)　31-41　1993

DOI： 10.1016/0168-9452(93)90168-Y 　

ISSN： 0168-9452
CHANGES IN INTRACELLULAR CAMP LEVEL AND ACTIVITIES OF ADENYLCYCLASE AND PHOSPHODIESTERASE DURING MEIOSIS OF LILY MICROSPOROCYTES

S SATO, S TABATA, Y HOTTA

CELL STRUCTURE AND FUNCTION　17　(6)　335-339　1992/12

DOI： 10.1247/csf.17.335 　

ISSN： 0386-7196

eISSN： 1347-3700
DEVELOPMENT AND PRESENT OPERATION OF MARINE DISASTER CONTROL SHIP Peer-reviewed

S SATO, K ITOH

TENTH INTERNATIONAL CONFERENCE ON LIQUEFIED NATURAL GAS : PAPERS　647-657　1992

Show all ︎Show first 5

Misc. 409

ゲノムと新技術により輝きを増す遺伝資源と育種学の未来—The future of genetic resources and breeding science brightened by genomics and new technologies—2022年第63回シンポジウム(シンポジウム・ワークショップ)報告

佐藤豊, 草場信, 内藤健, 磯部祥子, 有泉亨, 佐藤修正, 佐藤和広, 新倉聡, 赤木剛士

育種学研究 = Breeding research : 日本育種学会和文誌 / 日本育種学会編　25　(1)　33-40　2023/06
Publisher: 日本育種学会
ISSN： 1344-7629
Response of non-leguminous plants during rhizobium inoculation

梅月毬華, 下田宜司, 磯部祥子, 花野滋, 平川英樹, 富永晃好, 壽崎拓哉, 征矢野敬, 川口正代司, 佐藤修正, 内海俊樹

植物微生物研究会研究交流会講演要旨集　32nd　2023

ISSN： 1341-0652
Citizen science project “Explore Global-Cooling Microbes“ aims to reduce soil greenhouse gas emission

大久保智司, 青木裕一, 加藤広海, 菊地美穂, 戸田聡一郎, 佐藤修正, 南澤究

日本生態学会大会講演要旨(Web)　70th　2023
Reconstruction of a Nitrogen-Fixing Symbiosis in a Synthetic Biological Approach

花野滋, 花野滋, 戸松創, 瀧田英司, 大竹興一郎, 梅月まり華, 平川秀樹, 磯部祥子, 征矢野敬, 壽崎拓哉, 下田宜司, 内海俊樹, 富永晃好, 舛本寛, 川口正代司, 柴田大輔, 佐藤修正

日本植物生理学会年会(Web)　64th　2023
Bradyrhizobium ottawaense株における温室効果ガスN₂Oの還元能

原沙和, 原沙和, SIQUEIRA Arthur Fernandes, 菅原雅之, 板倉学, 三井久幸, GOMES Cristina Sanchez, 佐藤修正, 下田宜司, 今泉(安楽)温子, 南澤究

日本土壌肥料学会講演要旨集(Web)　68　2022

ISSN： 2424-0575
土壌のN₂O発生削減をめざす市民科学プロジェクト「地球冷却微生物を探せ」

大久保智司, 青木裕一, 戸田聡一郎, 加藤広海, 菊地美穂, 佐藤修正, 南澤究

日本土壌肥料学会講演要旨集(Web)　68　2022

ISSN： 2424-0575
Widespread LTR retrotransposon activation in inter- and intra-species recombinant inbred populations of Lotus japonicus

深井英吾, 深井英吾, 深井英吾, 深井英吾, 深井英吾, 吉川学, SHAH N., SANDAL N., 宮尾安藝雄, 小野聖二郎, 平川英樹, AKYOL T., 梅原洋佐, 野々村賢一, STOUGAARD J., 廣近洋彦, 林誠, 林誠, 佐藤修正, 佐藤修正, ANDERSEN S., 岡崎桂一

育種学研究　24　2022

ISSN： 1344-7629
根粒共生による薬用植物カンゾウのグリチルリチン酸生産の活性化

鈴木章弘, 草場郁子, 眞板寛子, 佐藤修正, 有馬進, 石丸幹二, 高上馬希重

日本土壌肥料学会講演要旨集(Web)　67　2021

ISSN： 2424-0575
窒素固定増強遺伝子を導入したフクユタカの性状解析

西田雄輝, 平岡令央奈, 河野里実, 菅沼教生, 佐藤修正, 渡邊啓史, 穴井豊昭, 有馬進, 富永晃好, 遠城道雄, 鈴木章弘

日本土壌肥料学会講演要旨集(Web)　67　2021

ISSN： 2424-0575
ミヤコグサ-根粒菌共生におけるGxG相互作用に関連する植物遺伝子の探索

番場大, 青木誠志郎, 梶田忠, 瀬戸口浩彰, 綿野泰行, 佐藤修正, 土松隆志

日本進化学会大会プログラム・講演要旨集(Web)　23rd　2021
根粒菌共生効率を制御するマメ科植物プロテアーゼ

下田宜司, 梅原洋佐, 伊藤(山谷)紘子, 林誠, 山崎俊正, 西ヶ谷有輝, 稲垣言要, 箱山雅生, 河内宏, 柴田哲, HOSSAIN Md Shakhawat, 佐藤修正, 平川英樹, 金子貴一, 川口正代司

農研機構生物機能利用研究部門成果情報(Web)　2020　2020
遺伝子水平伝播による根粒菌Partner quality variationの創出

番場大, 青木誠志郎, 梶田忠, 瀬戸口博明, 綿野泰行, 佐藤修正, 土松隆志

日本植物分類学会大会研究発表要旨集　19th　2020
農耕地利用の強度に応答したアーバスキュラー菌根菌群集の収斂と多様性の維持機構

丹羽理恵子, 佐藤修正, 佐藤修正, 平川英樹, 吉田重信, 佐藤孝, 鈴木貴恵, 佐藤匠, 俵谷圭太郎, 福永亜矢子, 小八重善裕, 大友量, 林正紀, 唐澤敏彦, 神山拓也, 丸山隼人, 江沢辰広

日本土壌肥料学会講演要旨集(Web)　66　2020

ISSN： 2424-0575
マメ科植物研究のためのミヤコグサバイオリソース Invited Peer-reviewed

橋口正嗣, 佐藤修正, 橋口拓勇, 田中秀典, 明石良

植物科学の最前線（BSJ-Review）　10　179-189　2019/07/16
Publisher: 日本植物学会
DOI： 10.24480/bsj-review.10c9.00169 　

ISSN： 2432-9819
ブドウべと病抵抗性に関与する葉裏の毛じ密度を減少させる遺伝子座

河野淳, 伴雄介, 三谷宣仁, 藤井浩, 佐藤修正, 北大, 須崎浩一, 東暁史, 尾上典之, 佐藤明彦

果樹茶業研究部門研究成果情報　2019/03
トランスクリプトーム解析によるニンニク遺伝資源のSNP情報の収集・整理

佐藤修正, 平田翔, 平川英樹, 山田朋宏, 執行正義

園芸学研究別冊　18　(2)　2019

ISSN： 1881-8307
圃場から単離したcheating根粒菌株のゲノム解析

日下部翔平, 二反田正悟, 平川英樹, 中川知己, 中川知己, 佐藤修正

植物微生物研究会研究交流会講演要旨集　29th　2019

ISSN： 1341-0652
野生種および栽培種のイチゴ根圏における微生物叢の比較解析

吉本達也, AKYOL Turgut Yigit, 佐藤修正, 平川英樹, 浅水恵理香

植物微生物研究会研究交流会講演要旨集　29th　2019

ISSN： 1341-0652
マメ科植物-根粒菌共生関係の多様性創出に関連する根粒菌ゲノム領域

番場大, 青木誠志朗, 梶田忠, 瀬戸口浩彰, 綿野泰行, 佐藤修正, 土松隆志

植物微生物研究会研究交流会講演要旨集　29th　2019

ISSN： 1341-0652
日本におけるイワオウギ-根粒菌共生系の系統地理学的解析

長谷川慎平, 川井友裕, 瀬尾直登, 池田啓, 佐藤修正, 矢崎一史, 高梨功次郎, 高梨功次郎

日本植物分類学会大会研究発表要旨集　18th (CD-ROM)　2019
環境要因(宮崎,宮城,千葉)がダイズコアコレクションの表現型に及ぼす影響について

橋口拓勇, 橋口正嗣, 田中秀典, 佐藤修正, 林篤司, 兒玉晋洋, 七夕高也, 磯部祥子, 中谷明弘, 明石良

育種学研究　21　2019

ISSN： 1344-7629
農耕地管理強度に沿ったアーバスキュラー菌根菌群集の入れ子構造:その生存戦略とインパクト

丹羽理恵子, 佐藤修正, 佐藤修正, 平川英樹, 吉田重信, 佐藤孝, 鈴木貴恵, 佐藤匠, 俵谷圭太郎, 福永亜矢子, 小八重善裕, 大友量, 林正紀, 唐澤敏彦, 神山拓也, 丸山隼人, 江沢辰広

日本土壌肥料学会講演要旨集(Web)　65　2019

ISSN： 2424-0575
菌根菌叢・細菌叢同定ウェブインターフェースの開発

平川英樹, 丹羽理恵子, 佐藤修正, 江沢辰広

日本植物細胞分子生物学会大会・シンポジウム講演要旨集　37th　2019
3-1-8 農耕地管理強度に沿ったアーバスキュラー菌根菌群集の入れ子構造：その生存戦略とインパクト（3-1 土壌生物の生態と機能，2019年静岡大会）

丹羽理恵子, 小八重善裕, 大友量, 林正紀, 唐澤敏彦, 神山拓也, 丸山隼人, 江沢辰広, 佐藤修正, 平川英樹, 吉田重信, 佐藤孝, 鈴木貴恵, 佐藤匠, 俵谷圭太郎, 福永亜矢子

日本土壌肥料学会講演要旨集　65　(0)　24-24　2019
Publisher: 一般社団法人日本土壌肥料学会
DOI： 10.20710/dohikouen.65.0_24_2 　

ISSN： 0288-5840
全ゲノム配列解析と交互接種実験から探るマメ科植物‐根粒菌間の共生特異性の進化

番場大, 青木誠志朗, 梶田忠, 瀬戸口浩彰, 綿野泰行, 佐藤修正, 土松隆志

日本進化学会大会プログラム・講演要旨集(Web)　20th　130 (WEB ONLY)　2018/08/22
ダイズ成長過程における形質・環境計測値の相互関係のネットワーク解析

七夕高也, 磯部祥子, 林篤司, 田中秀典, 橋口正嗣, 明石良, 長谷川舞衣, 菊地正隆, 中谷明弘, 佐藤修正, 七夕小百合

育種学研究　20　97　2018/03/25

ISSN： 1344-7629
菌根菌叢および細菌叢のウェブ上解析インターフェースの開発

平川英樹, 丹羽理恵子, 佐藤修正, 江沢辰広

日本ゲノム微生物学会年会要旨集　12th　2018
Allium cepaにおける全ゲノム解読に向けた取り組みについて

執行正義, MOSTAFA Abdelrahman, MOSTAFA Abdelrahman, 佐藤修正, 平川英樹, 辻村真衣, 寺地徹, 豊田敦

園芸学研究別冊　17　(1)　2018

ISSN： 1881-8307
現地農家圃場等におけるネギへのAM菌資材の接種効果

鈴木貴恵, 丹羽理恵子, 丹羽理恵子, 宇野亨, 田島亮介, 伊藤豊彰, 伊藤豊彰, 佐藤修正, 平川英樹, 吉田重信, 江沢辰広, 齋藤雅典, 齋藤雅典

日本土壌肥料学会講演要旨集　64　2018

ISSN： 0288-5840
ミヤコグサが土壌微生物叢を操る仕組み

中川知己, 中川知己, 佐伯和彦, 豊岡公徳, 佐藤繭子, 平川英樹, 大澤美芙, 若崎眞由美, 福原舞, 福原舞, 川東拓司, 吉田彩恵, 菅沼教生, 三井久幸, 佐藤修正, 川口正代司, 川口正代司

日本植物生理学会年会(Web)　59th　2018
日本におけるオヤマノエンドウの系統地理学的解析

長谷川慎平, 川井友裕, 瀬尾直登, 池田啓, 佐藤修正, 矢崎一史, 高梨功次郎, 高梨功次郎

日本植物分類学会大会研究発表要旨集　17th　2018
オヤマノエンドウ-根粒菌共生系の日本の高山帯における分布変遷

長谷川慎平, 川井友裕, 瀬尾直登, 池田啓, 佐藤修正, 矢崎一史, 高梨功次郎, 高梨功次郎

日本植物学会大会研究発表記録　82nd　2018
マメ科高山植物イワオウギ共生根粒菌の系統解析

長谷川慎平, 川井友裕, 瀬尾直登, 佐藤修正, 矢崎一史, 高梨功次郎, 高梨功次郎

植物微生物研究会研究交流会講演要旨集　28th　2018

ISSN： 1341-0652
植物の成長環境の変化に関連する遺伝子機能を解明するための成長計測技術の開発

七夕高也, 林篤司, 高地伸夫, 磯部祥子, 田中秀典, 橋口正嗣, 明石良, 中谷明弘, 菊地正隆, 長谷川舞衣, 佐藤修正, 七夕小百合

電気学会全国大会講演論文集(CD-ROM)　2018　2018
ダイズ成長過程における個体形状の変化を網羅的に計測する画像解析手法の開発

七夕高也, 磯部祥子, 林篤司, 田中秀典, 橋口正嗣, 橋口拓勇, 明石良, 長谷川舞衣, 菊地正隆, 中谷明弘, 佐藤修正, 七夕小百合

育種学研究　20　2018

ISSN： 1344-7629
ミヤコグサの成長に関連する量的形質を推定する線形混合モデル

長谷川舞衣, 菊地正隆, 小林香織, 小林香織, 市原寿子, 佐藤修正, 権藤崇裕, 橋口正嗣, 橋口拓勇, 田中秀典, 磯部祥子, 明石良, 中谷明弘

日本分子生物学会年会プログラム・要旨集(Web)　41st　2018
日本各地より採集された野生ミヤコグサに共生する根粒菌の系統解析

番場大, 青木誠志郎, 梶田忠, 綿野泰行, 瀬戸口浩彰, 佐藤修正, 土松隆志

植物微生物研究会研究交流会講演要旨集　27th　37 (JA),38 (EN)　2017/12

ISSN： 1341-0652
日本各地における野生ミヤコグサ(Lotus japonicus)に共生している根粒菌の系統解析

番場大, 青木誠志郎, 梶田忠, 綿野泰行, 瀬戸口浩彰, 佐藤修正, 土松隆志

日本植物学会大会研究発表記録　81st　178　2017/09/01
日本各地の野生ミヤコグサに共生する根粒菌の単離と系統解析

番場大, 青木誠志郎, 梶田忠, 瀬戸口浩彰, 綿野泰行, 佐藤修正, 土松隆志

日本進化学会大会プログラム・講演要旨集(Web)　19th　112 (WEB ONLY)　2017/08/24
栽培バラの祖先種であるノイバラ(Rosa multiflora)のドラフトゲノム

中村典子, 平川英樹, 佐藤修正, 太田垣駿吾, 松本省吾, 田畑哲之, 田中良和

日本植物細胞分子生物学会大会・シンポジウム講演要旨集　35th　141　2017/08/20
アーバスキュラー菌根菌接種の残効が翌年のダイズ生育へ及ぼす影響

神山拓也, 丹羽理恵子, 安達克樹, 江沢辰広, 鈴木崇之, 佐藤修正, 佐藤修正, 平川英樹, 吉田重信

日本作物学会講演会要旨集　243rd　189-189　2017/03/29
Publisher: CROP SCIENCE SOCIETY OF JAPAN
DOI： 10.14829/jcsproc.243.0_189 　
日本のマメ科高山植物―根粒菌共生系の系統と宿主特異性

川井友裕, 瀬尾直登, 池田啓, 佐藤修正, 矢崎一史, 髙梨功次郎

日本植物分類学会第16回大会　16th　2017/03
A major locus involved in the formation of the radial oxygen loss barrier in adventitious roots of teosinte Zea nicaraguensis is located on the short-arm of chromosome 3. International-journal Peer-reviewed

Kohtaro Watanabe, Hirokazu Takahashi, Saori Sato, Shunsaku Nishiuchi, Fumie Omori, Al Imran Malik, Timothy David Colmer, Yoshiro Mano, Mikio Nakazono

Plant, cell & environment　40　(2)　304-316　2017/02

DOI： 10.1111/pce.12849 　

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A radial oxygen loss (ROL) barrier in roots of waterlogging-tolerant plants promotes oxygen movement via aerenchyma to the root tip, and impedes soil phytotoxin entry. The molecular mechanism and genetic regulation of ROL barrier formation are largely unknown. Zea nicaraguensis, a waterlogging-tolerant wild relative of maize (Zea mays ssp. mays), forms a tight ROL barrier in its roots when waterlogged. We used Z. nicaraguensis chromosome segment introgression lines (ILs) in maize (inbred line Mi29) to elucidate the chromosomal region involved in regulating root ROL barrier formation. A segment of the short-arm of chromosome 3 of Z. nicaraguensis conferred ROL barrier formation in the genetic background of maize. This chromosome segment also decreased apoplastic solute permeability across the hypodermis/exodermis. However, the IL and maize were similar for suberin staining in the hypodermis/exodermis at 40 mm and further behind the root tip. Z. nicaraguensis contained suberin in the hypodermis/exodermis at 20 mm and lignin at the epidermis. The IL with ROL barrier, however, did not contain lignin in the epidermis. Discovery of the Z. nicaraguensis chromosomal region responsible for root ROL barrier formation has improved knowledge of this trait and is an important step towards improvement of waterlogging tolerance in maize.
ミヤコグサはいかにして働かないcheating根粒菌を排除するのか?

中川知己, 中川知己, 佐伯和彦, 豊岡公徳, 佐藤繭子, 平川英樹, 大澤美芙, 若崎眞由美, 福原舞, 福原舞, 川東拓司, 吉田彩恵, 菅沼教生, 佐藤修正, 三井久幸, 岡崎伸, 川口正代司, 川口正代司

植物微生物研究会研究交流会講演要旨集　27th　2017

ISSN： 1341-0652
ミヤコグサに根粒菌の侵入阻害を誘導するBradyrhizobium elkanii USDA61株の3型分泌エフェクター及び宿主側因子の解析

日下部翔平, 金子貴一, 安田美智子, 三輪大樹, 岡崎伸, 佐伯和彦, 佐藤修正

植物微生物研究会研究交流会講演要旨集　27th　2017

ISSN： 1341-0652
日本の高山におけるマメ科植物と根粒菌の共生関係

高梨功次郎, 高梨功次郎, 川井友裕, 瀬尾直登, 池田啓, 佐藤修正, 矢崎一史

日本植物学会大会研究発表記録　81st　2017
マメ科高山植物オヤマノエンドウの系統地理学的解析

長谷川慎平, 川井友裕, 瀬尾直登, 佐藤修正, 矢崎一史, 高梨功次郎, 高梨功次郎

植物微生物研究会研究交流会講演要旨集　27th　2017

ISSN： 1341-0652
ミヤコグサの形質を推定する数理モデルの検討

長谷川舞衣, 菊地正隆, 市原寿子, 佐藤修正, 権藤崇裕, 橋口正嗣, 田中秀典, 磯部祥子, 明石良, 中谷明弘

日本生化学会大会(Web)　90th　2017
ネギにおけるアーバスキュラー菌根菌接種菌と土着菌との競合および接種効果発現に関わる環境要因

丹羽理恵子, 丸山隼人, 佐藤修正, 佐藤修正, 平川英樹, 吉田重信, 齋藤雅典, 齋藤雅典, 鈴木貴恵, 俵谷圭太郎, 佐藤匠, 江沢辰広

日本土壌肥料学会講演要旨集　62　29-29　2016/09/20
Publisher: 一般社団法人日本土壌肥料学会
DOI： 10.20710/dohikouen.62.0_29_3 　

ISSN： 0288-5840
アーバスキュラー菌根菌接種資材の作物根への定着に関わる生態的要因

丹羽理恵子, 丸山隼人, 佐藤修正, 平川英樹, 吉田重信, 大友量, 小八重善裕, 佐藤孝, 唐澤敏彦, 林正紀, 福永亜矢子, 安達克樹, 神山拓也, 江沢辰広

日本土壌微生物学会講演要旨集　2016　57　2016/06/06
メタゲノム解析によるダイズMethylobacterium属細菌のメチルアミン・ウレイド代謝の発見

南智之, 按田瑞恵, 三井久幸, 菅原雅之, 金子貴一, 佐藤修正, 佐藤修正, 池田成志, 原新太郎, 南澤究

日本土壌微生物学会講演要旨集　2016　17　2016/06/06
Allium cepaにおける超高密度連鎖地図作成の試み

山北和香, 竹富詩歩, 佐藤修正, 平田翔, 平川英樹, 田中啓介, 峯洋子, 山内直樹, 執行正義

園芸学研究別冊　15　(1)　2016

ISSN： 1881-8307
ミヤコグサのとの相互作用に関与するBradyrhizobium elkanii USDA61株の3型分泌エフェクターの解析

日下部翔平, 金子貴一, 安田美智子, 三輪大樹, 岡崎伸, 佐藤修正

植物微生物研究会研究交流会講演要旨集　26th　2016

ISSN： 1341-0652
根粒菌のエフェクターによるミヤコグサ根粒形成の制御

三輪大樹, 安田美智子, 増田幸子, 金子貴一, 佐藤修正, 岡崎伸

植物微生物研究会研究交流会講演要旨集　26th　2016

ISSN： 1341-0652
日本の高山帯から単離された根粒菌のゲノム解析

高梨功次郎, 池田啓, 瀬尾直登, 佐藤修正, 矢崎一史

日本農芸化学会大会講演要旨集(Web)　2016　2016

ISSN： 2186-7976
ネギ属トランスクリプトームデータベースAllium TDBを活用したAllium cepa連鎖地図の構築

藤戸聡史, 山下謙一郎, 山下謙一郎, 若生忠幸, 塚崎光, 塚崎光, 山北和香, 佐藤修正, 平川英樹, 執行正義

園芸学研究別冊　15　(2)　2016

ISSN： 1881-8307
日本のダイズリソースにおけるRj2遺伝型の分布

菅原雅之, 梅原洋佐, 千葉(柿崎)芳里, 佐藤修正, 加賀秋人, 石本政男, 南澤究

植物微生物研究会研究交流会講演要旨集　25th　39 (JA),40 (EN)　2015/12

ISSN： 1341-0652
大量の挿入配列を保有するダイズ根粒菌のゲノム解析 : 根粒菌の生成と消滅を示唆する共生アイランド爆発(2015年度大会講演要旨)

飯田隆之, 板倉学, 按田瑞恵, 菅原雅之, 伊沢剛, 大久保卓, 佐藤修正, 千葉(柿崎) 芳里, 南澤究

土と微生物　69　(2)　111-111　2015/10/01
Publisher: 日本土壌微生物学会
ISSN： 0912-2184
日本のダイズ根粒菌とダイズのRj2共生不和合性

菅原雅之, 鈴木悠太, 板倉学, 千葉(柿崎)芳里, 佐藤修正, 加賀秋人, 石本政男, 南澤究

土と微生物　69　(2)　124-124　2015/10/01
Publisher: 日本土壌微生物学会
ISSN： 0912-2184
3 ミヤコグサ根粒誘導性シスエレメントの同定及びその機能解析(関西支部講演会,2014年度各支部会)

三田村梨帆, 森毅, 多田安臣, 山本義治, 佐藤修正, 半田佳宏, 斎藤勝晴, 川口正代司, 田島茂行, 野村美加

日本土壌肥料学会講演要旨集　(61)　276-276　2015/09/09
Publisher: 一般社団法人日本土壌肥料学会
ISSN： 0288-5840
2 Genetic screening and prediction of genes function involved in nodule senescence in the L. japonicus and M. loti symbiosis

Chungopast S., Hirakawa H., Sato S., Handa Y., Saito K., Kawaguchi M., Tajima S., Nomura M.

Abstracts of the meeting, the Society of the Science of Soil and Manure　(61)　276-276　2015/09/09
Publisher: Japanese Society of Soil Science and Plant Nutrition
ISSN： 0288-5840
全ゲノム配列を使った日本産ミヤコグサの開花時期多様性に関わる遺伝的背景の比較

若林智美, Stig Andersen, 佐藤修正, 川口正代司, 瀬戸口浩彰

日本植物学会第79大会，新潟市， 9月5日〜8日. 2015年　2015/09
Limnothrix sp.ABRG5-3株のゲノム解読と他種シアノバクテリアゲノムとの比較

田島直幸, 兼崎友, 佐藤修正, 吉川博文, 丸山史人, 黒川顕, 太田啓之, 田畑哲之, 高根澤陽, 西澤智康, 朝山宗彦, 佐藤直樹

日本植物生理学会年会要旨集　56th　2015
ネギ単一異種染色体添加系統のRNA-Sequencingによるシャロット染色体マーカーの大量取得

山北和香, 佐藤修正, ABDELRAHMAN Mostafa, 平田翔, 平川英樹, 田中啓介, 峯洋子, 山内直樹, 執行正義

園芸学研究別冊　14　(2)　2015

ISSN： 1881-8307
ネギ属バイオリーソースを用いたトランスクリプトーム解析データの活用

執行正義, 佐藤修正, ABDELRAHMAN Mostafa, 平田翔, 平川英樹, 田中啓介, 峯洋子, 杉山信男, 山内直樹

園芸学研究別冊　14　(2)　2015

ISSN： 1881-8307
ソルガム,トランスクリプトームデータベースの更新

蒔田由布子, 嶋田勢津子, 川島美香, 栗山朋子, 平川英樹, 佐藤修正, 松井南

日本植物細胞分子生物学会大会・シンポジウム講演要旨集　33rd　2015
Aminobacter属に属するミヤコグサ根粒菌のゲノム解析

眞板寛子, 王明卓, 窪田和奈, 平川英樹, 平川英樹, 佐伯和彦, 佐藤修正

日本ゲノム微生物学会年会要旨集　9th　2015
ミヤコグサ根粒菌野生系統を用いた耐塩性関連遺伝子の探索

窪田和奈, 大澤美芙, 眞板寛子, 眞板寛子, 平川英樹, 佐藤修正, 佐伯和彦

植物微生物研究会研究交流会講演要旨集　25th　2015

ISSN： 1341-0652
ミヤコグサ根粒菌のNaCl耐性に関する比較ゲノムおよび分子遺伝学解析

窪田和奈, 大澤美芙, 眞板寛子, 眞板寛子, 平川英樹, 佐藤修正, 佐伯和彦

日本生化学会大会(Web)　88th　2015
ネギの発現遺伝子配列を活用したDNAマーカー

塚崎光, 谷口成紀, 佐藤修正, 平川英樹, 片寄裕一, 金森裕之, 伊藤剛, 福岡浩之, 山下謙一郎, 執行正義, 若生忠幸

農研機構野菜茶業研究所成果情報(Web)　2015　2015
根粒菌3型分泌系による根粒形成の制御機構

三輪大樹, OMAR Faruque, 増田幸子, 安田美智子, 金子貴一, 佐藤修正, 岡崎伸

植物微生物研究会研究交流会講演要旨集　25th　2015

ISSN： 1341-0652
高山マメ科植物の分布変遷に伴う共生根粒菌ゲノムの水平伝播

高梨功次郎, 池田啓, 瀬尾直登, 平川英樹, 佐藤修正, 矢崎一史

日本植物分類学会大会研究発表要旨集　14th　2015
マメ科高山植物の分散に伴う共生根粒菌ゲノムの水平伝播

高梨功次郎, 池田啓, 瀬尾直登, 佐藤修正, 矢崎一史

日本植物学会大会研究発表記録　79th　2015
マメ科高山植物から単離した共生根粒菌のゲノム配列

高梨功次郎, 池田啓, 瀬尾直登, 佐藤修正, 矢崎一史

植物微生物研究会研究交流会講演要旨集　25th　2015

ISSN： 1341-0652
マメ科野生集団の分散に伴う根粒菌共生アイランドの水平伝播

高梨功次郎, 池田哲, 瀬尾直登, 佐藤修正, 矢崎一史

日本ゲノム微生物学会年会要旨集　9th　2015
Metagenomic studies of activate sludge to search for genes and genomes with environmental and industrial importance

Takashi Abe, Toshiyoshi Nakata, Yosuke Kumagai, Shusei Sato, Hideki Hirakawa, Akihiro Kondo, Chihiro Sugimoto, Toshimichi Ikemura, Kazuhiko Matsui

GENES & GENETIC SYSTEMS　89　(6)　328-328　2014/12

ISSN： 1341-7568

eISSN： 1880-5779
P4-1-5 ミヤコグサのARN1は地上部と地下部間の成長バランスを制御する受容体キナーゼである(ポスター,4-1 植物の多量栄養素,2014年度東京大会)

矢野幸司, 寿崎拓哉, 梅原洋佐, 佐藤修正, 河内宏, 林誠, 川口正代司, 藤原徹

日本土壌肥料学会講演要旨集　(60)　57-57　2014/09/09
Publisher: 一般社団法人日本土壌肥料学会
ISSN： 0288-5840
P3-1-12 共生窒素固定を促進するダイズ根粒菌III型分泌系エフェクター(ポスター,3-1 土壌生物の生態と機能,2014年度東京大会)

鈴木悠太, Sanchez Cristina, 柿崎芳里, 佐藤修正, 金子貴一, 南澤究

日本土壌肥料学会講演要旨集　(60)　40-40　2014/09/09
Publisher: 一般社団法人日本土壌肥料学会
ISSN： 0288-5840
45 窒素濃度に応答して根系の発達を制御するミヤコグサARN1の解析(関東支部講演会,2013年度各支部会)

矢野幸司, 寿崎拓哉, 梅原洋佐, 佐藤修正, 田畑哲之, 河内宏, 林誠, 川口正代司, 藤原徹

日本土壌肥料学会講演要旨集　(60)　278-278　2014/09/09
Publisher: 一般社団法人日本土壌肥料学会
ISSN： 0288-5840
カーネーションのゲノム解読

八木雅史, 小杉俊一, 平川英樹, 大宮あけみ, 棚瀬幸司, 原田太郎, 岸本久太郎, 中山真義, 市村一雄, 小野崎隆, 山口博康, 佐々木伸大, 宮原平, 西崎雄三, 小関良宏, 中村典子, 鈴木孝征, 田中良和, 佐藤修正, 白澤健太, 磯部祥子, 宮村佳典, 渡辺安希子, 中山しのぶ, 岸田佳恵, 小原光代, 田畑哲之

園芸学研究別冊　13　(1)　215　2014/03/29

ISSN： 1881-8307
Limnothrix sp. ABRG5-3株のゲノム配列決定とシアノバクテリアの中での系統関係

田島直幸, 兼崎友, 佐藤修正, 吉川博文, 丸山史人, 黒川顕, 太田啓之, 田畑哲之, 高根澤陽, 西澤智康, 朝山宗彦, 佐藤直樹

日本植物生理学会年会要旨集　55th　2014
宿主変異体の窒素固定活性を規定する根粒菌因子の機能解析

下田宜司, 西ケ谷有輝, 山谷紘子, 山谷紘子, 丸山洋介, 佐伯和彦, 佐藤修正, 山崎俊正, 河内宏, 河内宏, 梅原洋佐, 林誠

植物微生物研究会研究交流会講演要旨集　24th　2014

ISSN： 1341-0652
Functional genomicsに向けたミヤコグサゲノム基盤情報の構築

佐藤修正, 佐藤修正, 平川英樹, 田畑哲之, GUPTA Vikas, MARKMANN Katharina, JIN Haojie, SANDAL Niels, STOUGAARD Jens, ANDERSEN Stig

日本植物生理学会年会要旨集　55th　2014
根粒原基を誘導するミヤコグサNINはCLE遺伝子を標的として根粒形成を抑制する

征矢野敬, 征矢野敬, 平川英樹, 佐藤修正, 佐藤修正, 林誠, 川口正代司

日本植物生理学会年会要旨集　55th　2014
ミヤコグサ根粒菌の共通性と多様性に関する比較ゲノム解析

眞板寛子, 平川英樹, 平川英樹, 窪田和奈, 佐伯和彦, 佐藤修正

日本ゲノム微生物学会年会要旨集　8th　2014
根へ照射する光が根粒形成および根粒菌の増殖に与える影響

下村彩, 下村彩, 宮崎信幸, 森内沙矢香, 永田真紀, 平川英樹, 佐藤修正, 田畑哲之, 有馬進, 有馬進, 鈴木章弘, 鈴木章弘

植物微生物研究会研究交流会講演要旨集　24th　2014

ISSN： 1341-0652
ミヤコグサエンドファイトRhizobium sp.KAW12のゲノム解析

金子貴一, 杉谷翔, 原田龍一, 平川英樹, 川原田泰之, RADUTOIU Elena Simona, 佐藤修正

植物微生物研究会研究交流会講演要旨集　24th　2014

ISSN： 1341-0652
メタゲノム解析による活性汚泥中に生息する有用な微生物の探索

熊谷鷹佑, 阿部貴志, 中田俊芳, 佐藤修正, 平川英樹, 近藤昭宏, 池村淑道, 松井和彦

日本ゲノム微生物学会年会要旨集　8th　2014
メタゲノム解析による活性汚泥中に生息する有用な微生物の探索

阿部貴志, 中田俊芳, 熊谷鷹佑, 佐藤修正, 平川英樹, 近藤昭宏, 杉本千尋, 池村淑道, 松井和彦

日本遺伝学会大会プログラム・予稿集　86th　2014
メタゲノム解析による活性汚泥中に生息する有用な微生物の探索

近藤昭宏, 阿部貴志, 中田俊芳, 熊谷鷹佑, 佐藤修正, 平川英樹, 杉本千尋, 池村淑道, 松井和彦

環境技術学会年次大会予稿集　14th　2014
ソルガム完全長cDNAライブラリーの構築と新規転写単位の発現解析

嶋田勢津子, 蒔田由布子, 近藤(栗山)朋子, 川島美香, 望月芳樹, 下山紗代子, 平川英樹, 佐藤修正, 豊田哲郎, 松井南

日本植物細胞分子生物学会大会・シンポジウム講演要旨集　32nd　2014
ナス全ゲノムの概要塩基配列

福岡浩之, 平川英樹, 白澤健太, 宮武宏治, 布目司, 根来里美, 大山暁男, 山口博隆, 佐藤修正, 磯部祥子, 田畑哲之

農研機構野菜茶業研究所成果情報(Web)　2014　2014
高山マメ科植物の分布変遷に伴う共生根粒菌ゲノムの伝搬と進化

高梨功次郎, 池田啓, 瀬尾直登, 佐藤修正, 矢崎一史

植物微生物研究会研究交流会講演要旨集　24th　2014

ISSN： 1341-0652
P25-41 共生不和合性を誘導するダイズ根粒菌のタイプIII型エフェクターの探索(ポスター発表)

岩野裕也, 鈴木悠太, 柿崎芳里, 菅原雅之, 佐藤修正, 南澤究

日本微生物生態学会講演要旨集　2014　259-259　2014
Publisher: 日本微生物生態学会
8倍体栽培種イチゴ(Fragaria x ananassa)のゲノム配列の解読

平川英樹, 白澤健太, 小杉俊一, 佐藤修正, 田畑哲之, 前田ふみ, 柳智博, QIN L, 磯部祥子

育種学研究　15　28　2013/10/12

ISSN： 1344-7629
8倍体栽培種イチゴ(Fragaria×x ananassa)と野生種のゲノム構造比較

平川英樹, 白澤健太, 小杉俊一, 佐藤修正, 田畑哲之, 前田ふみ, 柳智博, QIN T, 磯部祥子

園芸学研究別冊　12　(2)　138　2013/09/20

ISSN： 1881-8307
車軸藻植物門クレブソルミディウムのゲノム解析と脂質代謝系の進化過程の解析

HORI KOICHI, MARUYAMA FUMITO, FUJISAWA TAKANORI, TOGASHI TOMOAKI, YAMAMOTO MARE, MADOKA YUKA, SHIMOJIMA MIE, SEO MITSUNORI, SATO SHUSEI, YAMADA TAKUJI, MORI HIROSHI, TAJIMA NAOYUKI, MORIYAMA SO, IKEUCHI MASAHIKO, WATANABE MAI, WADA MOTOI, KOBAYASHI KOICHI, SAITO MASAKAZU, MASUDA TATSURU, SEKIMOTO(SASAKI) YUIKO, MASUGUCHI KIYOSHI, AWAI KOICHIRO, MASUDA SHINJI, IWAI MASAKO, NOBUSAWA TAKESHI, NARUSE TAKASHI, KONDO SATOSHI, SAITO TAKESHI, SATO RYOICHI, MURAKAWA MASATO, IHARA YUTA, OSHIMA(YAMADA) YUI, OTAKA KINUKA, SATO MASANORI

日本植物学会大会研究発表記録　77th　126　2013/08/20
ダイズの日長反応性を介した開花制御に関わる遺伝子を解明

渡邊啓史, 夏正俊, 坪倉康隆, 山崎俊正, 原田久也, 石本政男, 山田哲也, 穴井豊昭, 佐藤修正, 田畑啓之

農業生物資源研究所主要な研究成果　2012　10-11　2013/06

ISSN： 1347-4294
ネギにおけるESTマーカーの開発

塚崎光, 谷口成紀, 佐藤修正, 片寄裕一, 金森裕之, 栗田加奈子, 伊藤剛, 熊谷真彦, 福岡浩之, 山下謙一郎, 執行正義, MCCALLUM John, 若生忠幸

園芸学研究別冊　12　(1)　128　2013/03/23

ISSN： 1881-8307
ナス遺伝資源の高密度SNPタイピング

福岡浩之, 齊藤猛雄, 白澤健太, 佐藤修正, 平川英樹, 宮武宏治, 根来里美, 山口博隆, 布目司, 大山暁男, 松永啓, 斎藤新

園芸学研究別冊　12　(1)　130　2013/03/23

ISSN： 1881-8307
車軸藻綱クレブソルミディウムのゲノム解析と植物の陸上化要因の予測

HORI KOICHI, MARUYAMA FUMITO, FUJISAWA TAKANORI, TOGASHI TOMOAKI, YAMAMOTO MARE, SEO MITSUNORI, SATO SHUSEI, YAMADA TAKUJI, MORI HIROSHI, TAJIMA NAOYUKI, MORIYAMA SO, IKEUCHI MASAHIKO, WATANABE MAI, WADA MOTOI, KOBAYASHI KOICHI, SAITO MASAKAZU, MASUDA TATSURU, SEKIMOTO(SASAKI) YUKO, MASUGUCHI KIYOSHI, AWAI KOICHIRO, SHIMOJIMA MIE, MASUDA SHINJI, IWAI MASAKO, NOBUSAWA TAKESHI, NARUSE TAKASHI, KONDO SATOSHI, SAITO TAKESHI, SATO RYOICHI, MURAKAWA MASATO, IHARA YUTA, OSHIMA YUI, OTAKA KINUKA, SATO MASANORI, SONOBE KOHEI, ISHII MIDORI, OTANI RYOSUKE, KANAMORI MIYU, HOOGI RINA, MIYAZAKI DAICHI

日本植物生理学会年会要旨集　54th　220　2013/03/14
イネ低温障害の耐性に関わる第7染色体遺伝子座の探索

友田文, 小田晋, 正村光, 古井瑛恵, 佐伯研一, 遠藤貴司, 永野邦明, 佐藤修正, 東谷篤志

日本分子生物学会年会プログラム・要旨集(Web)　36th　2013
ミヤコグサ遠縁交雑RIL集団におけるレトロトランスポゾンの活性化

深井英吾, SANDAL N., 吉川学, 平川英樹, 梅原洋佐, 河内宏, 佐藤修正, STOUGAARD J., 廣近洋彦, 林誠

育種学研究　15　2013

ISSN： 1344-7629
ダイズ根粒菌elkanii USDA61のゲノム構造解析

宮澤幸樹, 飛彈英伸, 太田公平, 佐藤修正, 平川英樹, 田畑哲之, 岡崎伸, 佐伯和彦, 金子貴一

植物微生物研究会研究交流会講演要旨集　22nd　2013

ISSN： 1341-0652
ミヤコグサ根粒菌共生アイランドの伝搬と進化:宿主モデル系統MG20自生地採集株群に焦点をあてて

佐伯和彦, 谷佳美, 池田翠, 金子貴一, 眞板寛子, 平川英樹, 田畑哲之, 佐藤修正

植物微生物研究会研究交流会講演要旨集　22nd　2013

ISSN： 1341-0652
根への光照射による根粒形成阻害機構

下村彩, 師富千絵, 仲亜由美, 宮崎信幸, 平川英樹, 佐藤修正, 田畑哲之, 有馬進, 鈴木章弘

植物微生物研究会研究交流会講演要旨集　22nd　2013

ISSN： 1341-0652
根粒初期発生における細胞リプログラミングの制御機構

寿崎拓哉, 寿崎拓哉, 伊藤百代, 西田帆那, 西田帆那, 養老瑛美子, 養老瑛美子, 佐藤修正, 佐藤修正, 平川英樹, 武田直也, 武田直也, 川口正代, 川口正代

日本植物学会大会研究発表記録　77th　2013
ソルガム完全長cDNAの整備と,配列解析による新規転写単位の同定及びソルガムゲノムブラウザ(Sorgabase)の構築

嶋田勢津子, 近藤(栗山)朋子, 蒔田由布子, 望月芳樹, 下山紗代子, 平川英樹, 佐藤修正, 豊田哲郎, 松井南

日本植物細胞分子生物学会大会・シンポジウム講演要旨集　31st　2013
ダイズ根粒菌Bradyrhizobium elkaniiの比較ゲノム解析

宮澤幸樹, 佐藤修正, 平川英樹, 岡崎伸, 佐伯和彦, 金子貴一

植物微生物研究会研究交流会講演要旨集　23rd　2013

ISSN： 1341-0652
根への光照射による根粒形成阻害と根粒菌の増殖

下村彩, 宮崎信幸, 森内沙矢香, 山本直也, 平川英樹, 佐藤修正, 田畑哲之, 有馬進, 鈴木章弘

植物微生物研究会研究交流会講演要旨集　23rd　2013

ISSN： 1341-0652
Functional genomicsに向けたミヤコグサゲノム情報の更新

佐藤修正, 佐藤修正, 平川英樹, 田畑哲之, GUPTA V., MARKMANN K., JIN H., SANDAL N., STOUGAARD J., ANDERSEN S.U.

植物微生物研究会研究交流会講演要旨集　23rd　2013

ISSN： 1341-0652
ミヤコグサ根粒菌野生系統の耐塩性について

窪田和奈, 谷佳美, 眞板寛子, 平川英樹, 佐藤修正, 佐伯和彦

植物微生物研究会研究交流会講演要旨集　23rd　2013

ISSN： 1341-0652
ミヤコグサの種間交雑RIL集団におけるレトロトランスポゾンの活性化

深井英吾, SANDAL Niels, 吉川学, 平川英樹, 梅原洋佐, 河内宏, 佐藤修正, STOUGAARD Jens, 廣近洋彦, 林誠

日本植物生理学会年会要旨集　54th　2013
宿主変異体の窒素固定表現型を規定する根粒菌因子の同定

下田宜司, 山谷紘子, 佐伯和彦, 眞板寛子, 平川英樹, 佐藤修正, 西ケ谷有輝, 山崎俊正, 河内宏, 梅原洋佐, 林誠

植物微生物研究会研究交流会講演要旨集　23rd　2013

ISSN： 1341-0652
8倍体イチゴ連鎖地図を利用した萎黄病抵抗性連鎖マーカーの開発

橋爪不二夫, 浜中悠, 磯部祥子, 佐藤修正, 藤田絢香, 掛田克行, 森利樹

育種学研究　15　2013

ISSN： 1344-7629
Genome-wide SNP marker development and QTL identification for Genomic selection in red clover

S. Isobe, B. Boller, I. Klimenko, S. Kölliker, J. C. Rana, T. R. Sharma, K. Shirasawa, H. Hirakawa, S. Sato, S. Tabata

Breeding Strategies for Sustainable Forage and Turf Grass Improvement　29-36　2013/01/01
Publisher: Springer Netherlands
DOI： 10.1007/978-94-007-4555-1_3 　
トマトにおける大規模なSNPジェノタイプデータに基づく遺伝子の機能解析

平川英樹, 白澤健太, 大山暁男, 福岡浩之, 青木考, ROTHAN Christophe, 佐藤修正, 磯部祥子, 田畑哲之

育種学研究　14　294　2012/09/14

ISSN： 1344-7629
9-8 硝酸イオンによる根の伸長に関わるミヤコグサ新規因子の解析(9.植物の多量栄養素,2012年度鳥取大会)

矢野幸司, 寿崎拓哉, 佐藤修正, 田畑哲之, 河内宏, 梅原洋佐, 藤原徹, 川口正代司

日本土壌肥料学会講演要旨集　(58)　55-55　2012/09/04
Publisher: 一般社団法人日本土壌肥料学会
ISSN： 0288-5840
SSRマーカーによるイチゴの統合連鎖地図作成

磯部祥子, 前田ふみ, 橋爪不二夫, 辻明子, 石川正美, 森利樹, 平川英樹, 白澤健太, 佐藤修正, 田畑哲之

育種学研究　14　288　2012/03/29

ISSN： 1344-7629
ミヤコグサAtMOT1相同遺伝子の機能解析

箱山雅生, DUAN Guilan, 神谷岳洋, FABIEN Lombardo, 横田圭祐, 三輪大樹, 佐藤修正, 田畑哲之, ZHENG Chen, 渡部敏裕, 信濃卓郎, 林誠, 藤原徹

日本植物生理学会年会要旨集　53rd　374　2012/03/09
内在性レトロトランスポゾンLORE1によるマメ科モデル植物ミヤコグサの大規模遺伝子タギング系の開発

深井英吾, 征矢野敬, 梅原洋佐, 中山しのぶ, 平川英樹, 田畑哲之, 佐藤修正, 林誠

育種学研究　14　2012

ISSN： 1344-7629
ミヤコグサ根粒菌(Mesorhizobium loti)12株における遺伝子構造の比較解析

眞板寛子, 眞板寛子, 平川英樹, 佐伯和彦, 田畑哲之, 佐藤修正, 佐藤修正

日本ゲノム微生物学会年会要旨集　6th　2012
内在のレトロトランスポゾンLORE1を用いたミヤコグサの大規模遺伝子タギング系の開発

深井英吾, 深井英吾, 征矢野敬, 梅原洋佐, 中山しのぶ, 平川英樹, 田畑哲之, 佐藤修正, 林誠

日本植物生理学会年会要旨集　53rd　2012
ダイズ根粒菌Bradyrhizobium elkaniiのゲノム構造解析

金子貴一, 宮澤幸樹, 飛彈英伸, 渡辺安希子, 平川英樹, 田畑哲之, 佐藤修正

日本ゲノム微生物学会年会要旨集　6th　2012
内在のレトロトランスポゾンLORE1を用いたミヤコグサの大規模遺伝子タギング系

深井英吾, 深井英吾, 征矢野敬, 梅原洋佐, 中山しのぶ, 岸田佳恵, 平川英樹, 田畑哲之, 佐藤修正, 林誠

植物微生物研究会研究交流会講演要旨集　21st　2012

ISSN： 1341-0652
ダイズ根粒菌Bradyrhizobium japonicum strain USDA6^Tのゲノム構造解析

金子貴一, 眞板寛子, 内池伸和, 渡辺安希子, 山田学, 平川英樹, 南澤究, 佐藤修正

植物微生物研究会研究交流会講演要旨集　21st　2012

ISSN： 1341-0652
シバ属における核ゲノムの遺伝的構造解析および葉緑体ゲノム配列

田中秀典, 橋口正嗣, 平川英樹, 佐藤修正, 明石良, 明石良

育種学研究　14　2012

ISSN： 1344-7629
メタゲノム解析による活性汚泥中の微生物群集構造の解明

阿部貴志, 中田俊芳, 佐藤修正, 平川英樹, 近藤昭宏, 杉本千尋, 池村淑道, 松井和彦

日本ゲノム微生物学会年会要旨集　6th　2012
SSRマーカーを用いたメキシコおよびアジア・アフリカのジャトロファの系統解析

笹井知博, ALIPOUR Atefeh, 平川英樹, 佐藤修正, 辻本壽, COLMENERO Alfred Zamarripa, 酒井啓江, 土本卓, 福井希一

日本生物工学会大会講演要旨集　64th　2012
A MATE-type transporter responsible for iron supply to nodule infection zone of Lotus japonicus.

高梨功次郎, 横正健剛, 高橋宏和, 佐伯和彦, 杉山暁史, 佐藤修正, 田畑哲之, 中園幹生, 馬建鋒, 矢崎一史

第１５回国際分子・植物・微生物相互作用学会（IS-MPMI) 2012.7.29-2012.8.2　2012
イチゴの連鎖地図作成とうどんこ病抵抗性に関与するQTL同定

磯部祥子, 前田ふみ, 石川正美, 平川英樹, 白澤健太, 佐藤修正, 田畑哲之

園芸学研究別冊　10　(2)　154　2011/09/24

ISSN： 1881-8307
リョクトウの貯蔵害虫抵抗性に必要なゲノム領域の解析

石本政男, 寺石政義, LIU Shiming, 佐山貴司, 廣瀬亜矢, 中本有美, 横田侑子, 佐藤修正, 平川英樹, 加賀秋人

育種学研究　13　105　2011/09/23

ISSN： 1344-7629
EST‐SSRマーカーを利用したダイコンの高密度連鎖地図の作成

白澤健太, 小山麻希, 平川英樹, 佐藤修正, 田畑哲之, 藤岡隆司, 君塚(高木)千明, 酒井隆子, 磯部祥子

育種学研究　13　257　2011/09/23

ISSN： 1344-7629
大規模SNPデータに基づくトマト品種の遺伝子機能解析

平川英樹, 白澤健太, 佐藤修正, 磯部祥子, 田畑哲之

育種学研究　13　269　2011/09/23

ISSN： 1344-7629
シーケンスキャプチャー法によるナス遺伝子近傍領域の網羅的SNPs探索

福岡浩之, 白澤健太, 平川英樹, 佐藤修正, 宮武宏治, 根来里美, 大山暁男, 布目司, 山口博隆

育種学研究　13　46　2011/09/23

ISSN： 1344-7629
PHYBシグナリングを介した光の質と量による根粒形成制御機構

重山珠紀, 佐々木雅代, SURIYAGODA Lalith, 富永晃好, 平塚芳美, 内海俊樹, 阿部美紀子, 橋口正嗣, 明石良, 酒井達也, 稲田さやか, 佐藤修正, 金子貴一, 田畑哲之, 東江栄, 有馬進, 鈴木章弘

根の研究 = Root research　20　(2)　79-79　2011/06/25

ISSN： 0919-2182
4倍体マメ科牧草シロクローバの連鎖地図作成と他マメ科植物との比較

磯部祥子, 久野裕, 奥村健治, 佐藤修正, 白澤健太, 平川英樹, 田畑哲之

育種学研究　13　23　2011/03/29

ISSN： 1344-7629
カーネーションのSSRマーカー開発とDNA品種識別への利用

酒井啓江, 佐藤修正, 平川英樹, 田畑哲之, 磯部祥子

園芸学研究別冊　10　(2)　2011

ISSN： 1881-8307
Eucalyptus camaldulensisのドラフトゲノムおよび転写産物配列の解読

平川英樹, 中村保一, 金子貴一, 磯部祥子, 日尾野隆, 田畑哲之, 佐藤修正

日本分子生物学会年会プログラム・要旨集(Web)　34th　2011
Analyses of ABC proteins in nodlues of Lotus japonicus

Akifumi Sugiyama, Kojiro Takanashi, Shoju Fukuda, Nobukazu Shitan, Shusei Sato, Satoshi Tabata, Kazufumi Yazaki

International Symposium "Strategies of Plants against Global Environmental Change" 2011.12.8-9　2011
Expression and functional analysis of a legume full-size ABC protein, LjABCG1, of Lotus japonicas

kifumi Sugiyama, Shoju Fukuda, Kojiro Takanashi, Nobukazu Shitan, Shusei Sato, Satoshi Tabata, Kazufumi Yazaki

ABC2011 2011.11.16-17　2011
ミヤコグサ根粒で発現する MATE 型トランスポーターは根粒内の鉄転流に関与している

高梨功次郎, 高橋宏和, 横正健剛, 杉山暁史, 佐藤修正, 田畑哲之, 馬建鋒, 中園幹生, 矢崎一史

第21回植物微生物研究交流会 2011.9.20-2011.9.22　21st　2011

ISSN： 1341-0652
SSRマーカーに基づくダイズ統合連鎖地図

石本政男, 黄太瑛, 佐山貴司, 高橋将一, 高田吉丈, 中本有美, 船附秀行, 久野裕, 笹本茂美, 佐藤修正, 田畑哲之, 河野いづみ, 星雅子, 塙正義, 矢野千鶴, 夏正俊, 原田久也, 喜多村啓介

新しい研究成果北海道地域　2009　109-111　2010/11/30

ISSN： 0919-9152
根粒超着生ダイズ由来のMethylobacterium属細菌の分離と系統解析(2010年度大会一般講演要旨)

按田瑞恵, 池田成志, 佐藤修正, 田畑哲之, 江田志磨, 三井久幸, 南澤究

土と微生物　64　(2)　147-147　2010/10/01
Publisher: 日本土壌微生物学会
DOI： 10.18946/jssm.64.2_147_3 　

ISSN： 0912-2184
SSRマーカーを用いた日本および中国ラッカセイ品種の識別

内藤嘉磯, 鈴木茂, 長谷川誠, 桑田主税, 津金胤昭, 渡邉学, 室田有里, 久保山勉, 遠山和宏, 磯部祥子, 佐藤修正, 白澤健太, 笹本茂美, 田畑哲之

育種学研究　12　294　2010/09/24

ISSN： 1344-7629
SSRマーカーに基づくダイズ統合連鎖地図

石本政男, 黄太暎, 佐山貴司, 高橋将一, 高田吉丈, 中本有美, 船附秀行, 久野裕, 笹本茂美, 佐藤修正, 田畑哲之, 河野いづみ, 星雅子, 塙正義, 矢野千鶴, 夏正俊, 原田久也, 喜多村啓介

研究成果情報北海道農業　2009　228-229　2010/06/30

ISSN： 1340-8607
根粒超着生ダイズ由来のMethylobacterium属細菌の分離と系統解析

按田瑞恵, 池田成志, 佐藤修正, 田畑哲之, 江田志磨, 三井久幸, 南澤究

日本土壌微生物学会講演要旨集　2010　48　2010/05/21
ラッカセイにおけるSSRマーカーを用いた連鎖地図作成

内藤嘉磯, 鈴木茂, 長谷川誠, 渡邉学, 久保山勉, 遠山和宏, 磯部祥子, 佐藤修正, 白澤健太, 笹本茂美, 田畑哲之

育種学研究　12　330　2010/03/26

ISSN： 1344-7629
KazusaMart:RhizoBaseのデータ統合と管理

藤澤貴智, 岡本忍, 中尾光輝, 金子貴一, 佐藤修正, 中村保一

植物微生物研究会研究交流会講演要旨集　19th　(JA)85,(EN)85-86　2010/03

ISSN： 1341-0652
RhizoBaseの新機能

岡本忍, 中尾光輝, 藤澤貴智, 佐藤修正, 中村保一, 金子貴一

植物微生物研究会研究交流会講演要旨集　19th　(JA)30,(EN)31　2010/03

ISSN： 1341-0652
バクテリアエンドファイトAzospirillum sp.B510のゲノム構造解析

金子貴一, 南澤究, 中務弘基, 三井久幸, 川原田泰之, 中村保一, 田畑哲之, 佐藤修正

日本ゲノム微生物学会年会要旨集　4th　2010
バクテリアエンドファイトAzospirillum sp.B510のゲノム構造解析

金子貴一, 南澤究, 中務弘基, 三井久幸, 川原田泰之, 中村保一, 田畑哲之, 佐藤修正

植物微生物研究会研究交流会講演要旨集　19th　2010

ISSN： 1341-0652
大規模遺伝子破壊系統を用いた,ミヤコグサ根粒菌新規共生関連遺伝子の解析

中務弘基, 下田宜司, 中村保一, 田畑哲之, 佐藤修正

植物微生物研究会研究交流会講演要旨集　19th　2010

ISSN： 1341-0652
根粒菌Mesorhizobium loti NZP2037株における共生関連領域のアノテーション

眞板寛子, 中山しのぶ, 小原光代, 山田学, 平川英樹, 中村保一, 中村保一, 金子貴一, 佐藤修正, 田畑哲之, 佐伯和彦

日本ゲノム微生物学会年会要旨集　4th　2010
ミヤコグサゲノム情報の更新と比較ゲノム解析

佐藤修正, 平川英樹, 深井英吾, 金子貴一, 中村保一, 浅水恵理香, 加藤友彦, 田畑哲之

日本植物生理学会年会要旨集　51st　2010
根粒菌Mesorhizobium lotiの共生アイランドにおける比較解析

眞板寛子, 眞板寛子, 平川英樹, 中村保一, 中村保一, 金子貴一, 佐藤修正, 佐藤修正, 田畑哲之, 佐伯和彦

生化学　2010

ISSN： 0037-1017
ミヤコグサFEN1タンパク質は根粒菌の窒素固定能の発現に必須である

箱山雅生, 箱山雅生, 新實香緒里, 渡辺博和, 田畑亮平, 松原潤一, 佐藤修正, 中村保一, 田畑哲之, LI Jichun, 松本剛, 巽和行, 野村美加, 田島茂行, 石坂眞澄, 矢野幸司, 今泉(安楽)温子, 川口正代司, 河内宏, 菅沼教生

植物微生物研究会研究交流会講演要旨集　19th　2010

ISSN： 1341-0652
マメ科の植物ミヤコグサABCタンパク質LjABCG1の発現および機能解析

福田正充, 杉山暁史, 高梨功次郎, 士反伸和, 田畑哲之, 佐藤修正, 矢崎一史

日本植物生理学会年会要旨集　51st　2010
ミヤコグサ根粒で発現するMATE型トランスポーターの解析

高梨功次郎, 杉山暁史, 杉山暁史, 佐藤修正, 田畑哲之, 矢崎一史

日本植物生理学会年会要旨集　51st　2010
ミヤコグサABCタンパク質LjABCG1の発現および機能解析

福田正充, 杉山暁史, 高梨功二郎, 士反伸和, 佐藤修正, 田畑哲之, 矢崎一史

植物微生物研究会研究交流会講演要旨集　19th　2010

ISSN： 1341-0652
根粒超着生ダイズからのMethylobacterium属及びAurantimonas属細菌の分離

按田瑞恵, 池田成志, 江田志磨, 佐藤修正, 田畑哲之, 三井久幸, 南澤究

環境バイオテクノロジー学会大会プログラム講演要旨集　40th　39　2010
8-22 根粒着生変異と窒素施肥レベルに応答したダイズ葉の細菌群集構造変化(8.共生,2010年度北海道大会)

池田成志, 佐藤修正, 田畑哲之, 佐々木和浩, 佐藤雅志, 江田志磨, 三井久幸, 南澤究

日本土壌肥料学会講演要旨集　56　(0)　51-51　2010
Publisher: 一般社団法人日本土壌肥料学会
DOI： 10.20710/dohikouen.56.0_51_1 　

ISSN： 0288-5840
かずさアノテーションスイート:多様なゲノムアノテーションのための協働作業手法とツールの開発

岡本忍, 中尾光輝, 藤澤貴智, 佐藤修正, 金子貴一, 吉村英尚, 中平有香, 阿久津智子, 鐘ケ江弘美, 笠井真, 山本純子, 作田千代子, 鹿島裕子, 中村保一

生化学　ROMBUNNO.4P-1171　2010

ISSN： 0037-1017
Construction of linkage maps of cultivated tomato by a high-throughput SNP analysis

Shirasawa Kenta, Isobe Sachiko, Sato Shusei, Fukuoka Hiroyuki, Rothan Christophe, Tabata Satoshi

Plant and Cell Physiology Supplement　2010　(0)　732-732　2010
Publisher: The Japanese Society of Plant Physiologists
DOI： 10.14841/jspp.2010.0.0732.0 　

More details Close

Linkage maps of cultivated tomato were constructed to promote post-genome sequencing studies in tomato. We discovered 5,607 candidate SNPs by comparison of 49,972 contigs that derived from 229,086 ESTs registered in public databases. Out of the 5,607 candidate SNP markers, 1,536 were tested for polymorphism using Illumina GoldenGate system for two mapping populations, namely AMF2, consisting of "Ailsa Craig", "Micro-Tom", and its F₂ progeny, and MMF2, consisting of "M82", "Micro-Tom", and its F₂ progeny. As the results, a total of 646 and 639 SNP markers showed polymorphism in the AMF2 and the MMF2 populations, respectively, and were subjected to linkage analysis. A linkage map of the AMF2 consisted of 991 loci, including 646 SNPs and 345 SSRs, which were previously developed from EST and BAC-end sequences, and covered 1,468 cM. In the MMF2 population, a total 637 SNP loci were located onto 12 linkage groups representing 1,126 cM. The results in this study will contribute the advances in physiology, molecular genetics, and genomics in tomato.
1A-13 ダイズの根粒着生変異と窒素施肥に応答したアルファ・ガンマプロテオバクテリアの群集構造変化(口頭発表)

池田成志, 大久保卓, 金子貴一, 稲葉尚子, 前川富也, 江田志摩, 佐藤修正, 田畑哲之, 三井久幸, 南澤究

日本微生物生態学会講演要旨集　(25)　7-7　2009/11/21
Publisher: 日本微生物生態学会
ダイズ開花関連遺伝子GmphyA3の多様性解析

坪倉康隆, 渡辺啓史, 金森裕之, 山形晴美, 秀島瑠満子, XIA Z, 佐藤修正, 中本有美, 山中直樹, 高橋良二, 石本政男, 穴井豊昭, 田畑哲之, 片寄裕一, 原田久也

育種学研究　11　50　2009/09/25

ISSN： 1344-7629
ESTに由来するSNPマーカーを利用したトマトの品種間多型

白澤健太, 磯部祥子, 藤代維一, 佐藤修正, 田畑哲之

育種学研究　11　303　2009/09/25

ISSN： 1344-7629
ラッカセイ栽培種におけるEST由来SSRマーカーの開発

内藤嘉磯, 鈴木茂, 長谷川誠, 渡邉学, 久保山勉, 磯部祥子, 佐藤修正, 白澤健太, 笹本茂美, 田畑哲之

育種学研究　11　320　2009/09/25

ISSN： 1344-7629
トマトゲノム情報を利用したゲノムワイドSSRマーカーセットの開発

福岡浩之, 大山暁男, 白澤健太, 根来里美, 佐藤修正, 宮武宏治, 布目司, 山口博隆

育種学研究　11　110　2009/09/25

ISSN： 1344-7629
34 ミヤコグサSNARE遺伝子の機能解析(関西支部講演会,2008年度各支部会)

長岡功微菜, 古味光紗, 真鍋友美, 神吉陽輔, 浅水絵里香, 佐藤修正, 田畑哲之, 野村美加, 田島茂行

日本土壌肥料学会講演要旨集　(55)　302-302　2009/09/15
Publisher: 一般社団法人日本土壌肥料学会
ISSN： 0288-5840
P10-5 Characterization of a Lotus japonicus mutant showing strong reduction in Molybdenum accumulation

Lombardo Fabien, Miwa Hiroki, Sato Shusei, Tabata Satoshi, Chen Zheng, Watanabe Toshihiro, Shinano Takuro, Fujiwara Toru

Abstracts of the meeting, the Society of the Science of Soil and Manure　(55)　88-88　2009/09/15
Publisher: Japanese Society of Soil Science and Plant Nutrition
ISSN： 0288-5840
S6-15 非培養法による植物共生微生物の多様性解析 : 非培養法によるダイズ共生微生物の群集構造に対する根粒共生系及び窒素施肥の影響評価(S6.分子生態学的解析手法を研究室のルーチンワークに!パート2それによって見えるもの、見たいもの,6.土壌生物,2009年度京都大会)

池田成志, 大久保卓, 金子貴一, 稲葉尚子, 前川富也, 江田志摩, 佐藤修正, 田畑哲之, 三井久幸, 南澤究

日本土壌肥料学会講演要旨集　(55)　42-42　2009/09/15
Publisher: 一般社団法人日本土壌肥料学会
ISSN： 0288-5840
Nicotianamine synthase specifically expressed in root nodules of Lotus japonicus

T. Hakoyama, H. Watanabe, J. Tomita, A. Yamamoto, S. Sato, Y. Mori, H. Kouchi, N. Suganuma

PLANTA　230　(2)　309-317　2009/07

DOI： 10.1007/s00425-009-0944-0 　

ISSN： 0032-0935
異なる根粒形成表現型ダイズにおける細菌エンドファイトの多様性解析

大久保卓, 池田成志, 佐藤修正, 金子貴一, 田畑哲之, 江田志磨, 三井久幸, 南澤究

植物微生物研究会研究交流会講演要旨集　18th　(JA)51,(EN)52　2009/03

ISSN： 1341-0652
かずさアノテーション:オープンアノテーションデータベースとその利用方法~根粒菌とミヤコグサでの実証実験~

岡本忍, 中尾光輝, 佐藤修正, 藤澤貴智, 中村保一

植物微生物研究会研究交流会講演要旨集　18th　32　2009/03

ISSN： 1341-0652
ユーカリmicroRNAの発現とそのターゲット遺伝子の同定

加藤友彦, 佐藤修正, 金子貴一, 中村保一, 田畑哲之, 日尾野隆

日本植物生理学会年会要旨集　50th　2009
ミヤコグサゲノム解析の進捗と関連リソースの紹介

佐藤修正, 金子貴一, 中村保一, 浅水恵理香, 加藤友彦, 下田宜司, 中務弘基, 岡本忍, 田畑哲之

植物微生物研究会研究交流会講演要旨集　18th　2009

ISSN： 1341-0652
バクテリアエンドファイトAzospirillum sp.B510ゲノムの全塩基配列決定と解析

金子貴一, 南澤究, 佐藤修正, 中務弘基, 三井久幸, 川原田泰之, 中村保一, 田畑哲之

植物微生物研究会研究交流会講演要旨集　18th　2009

ISSN： 1341-0652
分子間ネットワークを基に選抜したミヤコグサ根粒菌共生関連遺伝子の変異株が示す表現型解析

中務弘基, 下田宜司, 下田宜司, 中村保一, 田畑哲之, 佐藤修正

植物微生物研究会研究交流会講演要旨集　18th　2009

ISSN： 1341-0652
ミヤコグサ根粒菌STM変異株の共生に関する表現型とタンパク質間相互作用情報を基にした新規共生関連遺伝子の機能類推

中務弘基, 下田宜司, 中村保一, 田畑哲之, 佐藤修正

日本分子生物学会年会講演要旨集　32nd　(Vol.1)　2009
根粒菌Mesorhizobium loti NZP2037株共生アイランドのアノテーション

眞板寛子, 中山しのぶ, 小原光代, 山田学, 平川英樹, 中村保一, 中村保一, 金子貴一, 佐藤修正, 田畑哲之, 佐伯和彦

日本分子生物学会年会講演要旨集　32nd　(Vol.2)　2009
共生窒素固定に必須なミヤコグサFEN1タンパク質の機能解析

箱山雅生, 箱山雅生, 新實香緒里, 渡辺博和, 田畑亮平, 松原潤一, 佐藤修正, 中村保一, 田畑哲之, 李基春, 松本剛, 巽和行, 石坂眞澄, 三井久幸, 今泉(安楽)温子, 川口正代司, 河内宏, 菅沼教生

日本植物生理学会年会要旨集　50th　2009
共生窒素固定に応答するミヤコグサABCタンパク質の解析

高梨功次郎, 杉山暁史, 佐藤修正, 田畑哲之, 矢崎一史

植物微生物研究会研究交流会講演要旨集　18th　2009

ISSN： 1341-0652
ミヤコグサ根粒の非感染細胞で発現するABCタンパク質の解析

高梨功次郎, 杉山暁史, 佐藤修正, 田畑哲之, 矢崎一史

日本植物生理学会年会要旨集　50th　2009
かずさアノテーションを用いた分散型ゲノムアノテーションの実証実験

岡木忍, 岡本忍, 中尾光輝, 藤沢貴智, 佐藤修正, 金子貴一, 中村保一

日本分子生物学会年会講演要旨集　32nd　(Vol.2)　19　2009
次世代シークエンサーを用いたラッカセイのcDNA解析

平川英樹, 白澤健太, 磯部祥子, 佐藤修正, 田畑哲之

日本分子生物学会年会講演要旨集　32nd　(Vol.1)　55　2009
10-183 Microbial community analysis of soybean stems by bacterial cell enrichment(Microbial community analysis)

Ookubo Takashi, Ikeda Seishi, Kaneko Takakazu, Rallos Lynn, Eda Shima, Mitsui Hisayuki, Satou Syuusei, Nakamura Yasukazu, Tabata Satoshi, Minamisawa Kiwamu

日本微生物生態学会講演要旨集　(24)　150-150　2008/11/25
Publisher: Japanese Society of Microbial Ecology
8-20 Screening of Mesorhizobium loti mutants for symbiotic N_2 fixation in Lotus japonicus

Thapanapongworakul Nanthipak, Dao Tan Van, Toma Kimihiko, Sato Shusei, Shimoda Yoshikazu, Tabata Satoshi, Nomura Mika, Tajima Shigeyuki

Abstracts of the meeting, the Society of the Science of Soil and Manure　(54)　63-63　2008/09/09
Publisher: Japanese Society of Soil Science and Plant Nutrition
ISSN： 0288-5840
ミヤコグサゲノム解析プロジェクトの進捗と遺伝子構成の特徴

佐藤修正, 中村保一, 金子貴一, 浅水恵理香, 加藤友彦, 田畑哲之

日本植物生理学会年会要旨集　49th　2008
窒素固定活性を制御するFEN1の機能解析

箱山雅生, 箱山雅生, 新實香緒里, 渡辺博和, 田畑亮平, 松原潤一, 佐藤修正, 中村保一, 田畑哲之, 今泉(安楽)温子, 川口正代司, 河内宏, 菅沼教生

植物微生物研究会研究交流会講演要旨集　17th　2008

ISSN： 1341-0652
ラン色細菌Synechocystis sp. PCC6803における酸性ストレス応答遺伝子slr0967欠損株による発現調節

太田尚孝, 太田尚孝, 柴田庸介, 長谷山陽平, 吉野由佳, 鈴木健裕, 森山淳, 池内昌彦, 榎並勲, 佐藤修正, 中村保一, 田畑哲之

日本植物生理学会年会要旨集　49th　2008
ミヤコグサのゲノム情報を利用したレセプターキナーゼ遺伝子の解析

下田宜司, 中村保一, 田畑哲之, 佐藤修正

植物微生物研究会研究交流会講演要旨集　17th　2008

ISSN： 1341-0652
ミヤコグサ根粒菌STM変異体を用いた共生関連遺伝子の分子間ネットワーク情報の評価と機能未知遺伝子の解析

中務弘基, 下田宜司, 中村保一, 田畑哲之, 佐藤修正

生化学　2008

ISSN： 0037-1017
ミヤコグサのenf変異体の性状解析

今里陽一郎, 山内彩可, 富永晃好, 穴井豊昭, 内海俊樹, 阿部美紀子, 九町健一, 東四郎, 橋口正嗣, 明石良, 佐藤修正, 金子貴一, 田畑哲之, 有馬進, 鈴木章弘

植物微生物研究会研究交流会講演要旨集　17th　2008

ISSN： 1341-0652
マメ科植物の比較ゲノム解析

佐藤修正, 中村保一, 金子貴一, 浅水恵理香, 加藤友彦, 田畑哲之

日本進化学会大会プログラム・講演要旨集(Web)　10th　2008
ミヤコグサの根粒形成に応答するABCB型ATP結合カセット蛋白質の解析

高梨功次郎, 杉山暁史, 佐藤修正, 田畑哲之, 矢崎一史

植物微生物研究会研究交流会講演要旨集　17th　2008

ISSN： 1341-0652
共生窒素固定に応答するミヤコグサABC蛋白質の解析

高梨功次郎, 杉山暁史, 佐藤修正, 田畑哲之, 矢崎一史

日本植物生理学会年会要旨集　49th　2008
根粒形成に関与するミヤコグサABCタンパク質LjPDR1(LjABCG1)の機能解析

杉山暁史, 高梨功次郎, 士反伸和, 佐藤修正, 田畑哲之, 矢崎一史

日本植物生理学会年会要旨集　49th　2008
シロイヌナズナvip6/elf8は有性生殖に必須の遺伝子である

白矢武士, 佐藤修正, 加藤友彦, 田畑哲之, 岩崎俊介

日本植物生理学会年会およびシンポジウム講演要旨集　649　2008

DOI： 10.14841/jspp.2008.0.0649.0 　
Involvement of a tobacco leucine-rich repeat-extensin in cell morphogenesis

Hiroshi Chida, Katsumi Yazawa, Seiichiro Hasezawa, Hiroaki Iwai, Shinobu Satoh

PLANT BIOTECHNOLOGY　24　(2)　171-177　2007/03

DOI： 10.5511/plantbiotechnology.24.171 　

ISSN： 1342-4580
シロイヌナズナのCa²⁺透過性機械受容チャネル候補の酵母細胞における機能

中野正貴, 寺島明日香, 山中拓哉, 中川祐子, 中川祐子, 池田光伸, 片桐健, 岸上明生, 戚智, 古市卓也, 辰巳仁史, 佐藤修正, 加藤友彦, 田畑哲之, 小島至, 飯田和子, 曽我部正博, 篠崎一雄, 飯田秀利

日本植物生理学会年会要旨集　48th　2007
ミヤコグサゲノム解析プロジェクトの進捗と比較ゲノム解析

佐藤修正, 中村保一, 金子貴一, 浅水恵理香, 加藤友彦, 笹本茂美, 小野章子, 渡邊安希子, 田畑哲之

日本植物生理学会年会要旨集　48th　2007
ミヤコグサゲノム構造解析と比較ゲノム解析

佐藤修正, 中村保一, 金子貴一, 浅水恵理香, 加藤友彦, 笹本茂美, 小野章子, 渡邊安希子, 田畑哲之

生化学　2007

ISSN： 0037-1017
生物の進化・多様性をもたらしたゲノム情報解明へ 6.植物の比較ゲノム解析

佐藤修正, 中村保一, 田畑哲之

実験医学　25　(2)　2007

ISSN： 0288-5514
かずさDNA研における有用植物(トマト,ユーカリ)およびバクテリアエンドファイトのゲノム配列解析プロジェクトの現状

金子貴一, 浅水恵理香, 中村保一, 佐藤修正, 福岡浩之, 南澤究, 笹本茂美, 渡邊安希子, 小野章子, 田畑哲之

日本植物生理学会年会要旨集　48th　2007
ラン色細菌Synechocystis sp.PCC6803における酸性ストレスに特異的に応答する遺伝子(slr0967とsll0939)の解析

森山淳, 長谷山陽平, 吉野由佳, 鈴木健裕, 外村紳一郎, 梅野伸彰, 池内昌彦, 榎並勲, 佐藤修正, 中村保一, 田畑哲之, 太田尚孝, 太田尚孝

日本植物学会大会研究発表記録　71st　2007
窒素固定活性を制御するミヤコグサFen1遺伝子のマップベースクローニング

箱山雅生, 新實香緒里, 渡辺博和, 田畑亮平, 松原潤一, 佐藤修正, 中村保一, 田畑哲之, 今泉(安楽)温子, 川口正代司, 河内宏, 菅沼教生

植物微生物研究会研究交流会講演要旨集　16th　2007

ISSN： 1341-0652
ミヤコグサのゲノム情報を利用したレセプターキナーゼ遺伝子の解析

下田宜司, 中村保一, 田畑哲之, 佐藤修正

生化学　2007

ISSN： 0037-1017
ミヤコグサのゲノム情報を利用したレセプターキナーゼ遺伝子の解析

下田宜司, 中村保一, 田畑哲之, 佐藤修正

日本植物生理学会年会要旨集　48th　2007
Gene expression analysis of tissue-reunion process in the Arabidopsis cut flowering stem

Masashi Asahina, Takashi Yamazaki, Shinjiro Yamaguchi, Yuji Kamiya, Hiroshi Kamada, Shinobu Satoh

PLANT AND CELL PHYSIOLOGY　48　S60-S60　2007

ISSN： 0032-0781
P-04. Establishment of red clover chromosome map by the improved chromosome image analyzing system, CHIAS4(Abstracts for the oral and the poster presentations,Abstracts of the Joint Meeting: the 58th Annual Meeting of the Society of Chromosome Research and the 17th Annual Meeting of the Chromosome Colloquium) :

HARA Masaki, KATAOKA Ryohei, KATO Seiji, ISOBE Sachiko, SATO Shusei, TABATA Satoshi, OHMIDO Nobuko

Chromosome science　10　(4)　124-124　2007
Publisher: Society of Chromosome Research
ISSN： 1344-1051
O-15. Construction of red clover (Trifolium pratense L.) chromosome map(Abstracts for the oral and the poster presentations,Abstracts of the Joint Meeting: the 58th Annual Meeting of the Society of Chromosome Research and the 17th Annual Meeting of the Chromosome Colloquium) :

KATAOKA Ryohei, HARA Masaki, KATO Seiji, ISOBE Sachiko, SATO Shusei, TABATA Satoshi, OHMIDO Nobuko

Chromosome science　10　(4)　115-115　2007
Publisher: Society of Chromosome Research
ISSN： 1344-1051
Is the flowering-associated protein VIP6/ELF8 essential for embryogenesis?

Takeshi Shiraya, Shusei Sato, Tomohiko Kato, Satoshi Tabata, Toshisuke Iwasaki

PLANT AND CELL PHYSIOLOGY　48　S190-S190　2007

ISSN： 0032-0781
Current status of genome sequencing projects of plants and endophytic bacteria at KDRI

Takakazu Kaneko, Erika Asamizu, Yasukazu Nakamura, Shusei Sato, Hiroyuki Fukuoka, Kiwamu Minamisawa, Shigemi Sasamoto, Akiko Watanabe, Akiko Ono, Satoshi Tabata

PLANT AND CELL PHYSIOLOGY　48　S254-S254　2007

ISSN： 0032-0781
Legume chromosome studies of Trifolium pratense and Lotus japonicus

Nobuko Ohmido, Seiji Kato, Ryohei Kataoka, Alciko Ishimaru, Sachiko Isobe, Shusei Sato, Satoshi Tabata

CHROMOSOME RESEARCH　15　56-56　2007

ISSN： 0967-3849
Functional analysis of MYB-like transcription factor multigene family in Lotus japonicus

Kazuko Yoshida, Rieko Iwasaka, Shusei Sato, Satoshi Tabata, Masaaki Sakuta

PLANT AND CELL PHYSIOLOGY　48　S66-S66　2007

ISSN： 0032-0781
Physiological function of AHK5 His-kinase in Arabidopsis thaliana

Ayako Iwama, Takafumi Yamashino, Yasushi Tanaka, Hitoshi Sakakibara, Tatsuo Kakimoto, Shusei Sato, Tomohiko Kato, Satoshi Tabata, Akira Nagatani, Takeshi Mizuno

PLANT AND CELL PHYSIOLOGY　48　S118-S118　2007

ISSN： 0032-0781
The construction of a linkage map of the soybean and the comparative genomics between the soybean and Lotus japonicus

Hiroshi Hisano, Shusei Sato, Shigemi Sasamoto, Tsuyuko Wada, Kyuya Harada, Satoshi Tabata

PLANT AND CELL PHYSIOLOGY　48　S254-S254　2007

ISSN： 0032-0781
Structural and comparative genome analysis of Lotus japonicus

Shusei Sato, Yasukazu Nakamura, Takakazu Kaneko, Erika Asamizu, Tomohiko Kato, Shigemi Sasamoto, Akiko Ono, Akiko Watanabe, Satoshi Tabata

PLANT AND CELL PHYSIOLOGY　48　S124-S124　2007

ISSN： 0032-0781
Functional characterization of Ca2+-permeable, stretchactivated ion channel candidates of Arabidopsis using yeast

Masataka Nakano, Asuka Terashima, Takuya Yamanaka, Yuko Nakagawa, Mitsunobu Ikeda, Takeshi Katagiri, Akio Kishigami, Zhi Qi, Takuya Furuichi, Hitoshi Tatsumi, Shusei Sato, Tomohiko Kato, Satoshi Tabata, Itaru Kojima, Kazuko Iida, Mashahiro Sokabe, Kazuo Shinozaki, Hidetoshi Iida

PLANT AND CELL PHYSIOLOGY　48　S228-S228　2007

ISSN： 0032-0781
Functional analysis of Lotus japonicus transcription factors identified in transcriptome analyses of the nodulation process

Erika Asamizu, Hiroshi Kouchi, Jillian Perry, Trevor Wang, Martin Parniske, Masayoshi Kawaguchi, Haruko Imaizumi-Anraku, Satoshi Tabata, Shusei Sato

PLANT AND CELL PHYSIOLOGY　48　S46-S46　2007

ISSN： 0032-0781
Characterization of receptor kinase genes family in Lotus japonicus

Yoshikazu Shimoda, Yasukazu Nakamura, Satoshi Tabata, Shusei Sato

PLANT AND CELL PHYSIOLOGY　48　S250-S250　2007

ISSN： 0032-0781
花成関連タンパク質VIP6/ELF8は胚発生に必須であるか？

白矢武士, 佐藤修正, 加藤友彦, 田畑哲之, 岩崎俊介

日本植物生理学会年会およびシンポジウム講演要旨集　693　2007
マメ科植物の比較ゲノム

佐藤修正, 久野裕, 田畑哲之

ゲノムから読み解く生命システム、細胞工学別冊　2007
2-OXOGLUTARATE-DEPENDENT DIOXYGENASES INVOLVED IN FLAVONOL SYNTHESIS IN LOTUS JAPONICUS

KONDO Kentaro, SHIMADA Norimoto, SATO Shusei, NAKAMURA Yasukazu, SASAKI Ryosuke, SAKURAI Nozomu, SHIBATA Daisuke, TABATA Satoshi, AYABE Shin-ichi, AOKI Toshio

119　104-104　2006/12/01

ISSN： 0918-9440
Promoter analysis of DAHP synthase multigene family in Lotus japonicus

YOSHIDA Kazuko, NAKAYA Yumi, IWASAKA Rieko, SATO Shusei, TABATA Satoshi, SAKUTA Masaaki

119　107-107　2006/12/01

ISSN： 0918-9440
Lotus japonicus CLAVATA2 negatively regulates nodulation

SATO Naoto, OKAMOTO Satoru, OKA KIRA Erika, FUKUHARA Izumi, OHTSUBO Yoko, NAKAGAWA Tomomi, SATO Shusei, TABATA Satoshi, PERRY Jillian, WANG Trevor, KAWAGUCHI Masayoshi

119　147-148　2006/12/01

ISSN： 0918-9440
Light-induced dissociation of SyPixD (cyanobacterial BLUF type photoreceptor) from SyPixE (response regulator).

K. Okajima, S. Sato, Y. Fukushima, A. Kita, Y. Ochiai, M. Katayama, S. Itoh, S. Tabata, M. Ikeuchi

Fifth East Asian Biophysics Symposium & Forty-Fourth Annual Meeting of the Biophysical Society of Japan.　0-0　2006/11/12
Legume genome evolution viewed through the Medicago truncatula and Lotus japonicus genomes (vol 103, pg 14959, 2006)

Steven B. Cannon, Lieven Sterck, Stephane Rombauts, Shusei Sato, Foo Cheung, Jerome Gouzy, Xiaohong Wang, Joann Mudge, Jayprakash Vasdewani, Thomas Scheix, Manuel Spannagl, Erin Monaghan, Christine Nicholson, Sean J. Humphray, Heiko Schoof, Klaus F. X. Mayer, Jane Rogers, Francis Quetier, Giles E. Oldroyd, Federic Debelle, Douglas R. Cook, Ernest F. Retzel, Bruce A. Roe, Christopher D. Town, Satoshi Tabata, Yves Van de Peer, Nevin D. Young

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA　103　(47)　18026-18026　2006/11

DOI： 10.1073/pnas.0609222103 　

ISSN： 0027-8424
P8-8 菌根・根粒共生に関わるヌクレオポリンNUP85の機能解析(8. 共生, 2006年度秋田大会講演要旨)

斎藤勝晴, 吉川真琴, 矢野幸司, 三輪大樹, 浅水恵理香, 佐藤修正, 田畑哲之, 今泉(安楽) 温子, 梅原洋佐, 河内宏, 室岡義勝, 長田敏行

日本土壌肥料学会講演要旨集　(52)　48-48　2006/09/05
Publisher: 一般社団法人日本土壌肥料学会
ISSN： 0288-5840
シロイヌナズナの伸展活性化Ca²⁺透過チャネル候補の分子遺伝学的研究

中川祐子, 中川祐子, 片桐健, 篠崎一雄, 戚智, 戚智, 古市卓也, 古市卓也, 岸上明生, 岸上明生, 辰巳仁史, 辰巳仁史, 曽我部正博, 曽我部正博, 佐藤修正, 加藤友彦, 田畑哲之, 小島至, 飯田和子, 寺島明日香, 寺島明日香, 中野正貴, 中野正貴, 池田光伸, 池田光伸, 山中拓哉, 山中拓哉, 飯田秀利, 飯田秀利

日本植物生理学会年会要旨集　47th　2006
共生窒素固定活性の発現を制御するミヤコグサSen1遺伝子のポジショナルクローニング

箱山雅生, 新實香緒里, 山本武史, 磯邉佐和, 佐藤修正, 中村保一, 田畑哲之, 熊谷浩高, 梅原洋佐, KRAUSE Katja, PETERSEN Thomas R., SANDAL Niels, STOUGAARD Jens, 野村美加, 田島茂行, 川口正代司, 河内宏, 菅沼教生

植物微生物研究会研究交流会講演要旨集　15th　2006

ISSN： 1341-0652
酵母two-hybrid解析系を用いたミヤコグサ根粒菌遺伝子産物の相互作用解析

下田宜司, 中村保一, 田畑哲之, 佐藤修正

植物微生物研究会研究交流会講演要旨集　15th　2006

ISSN： 1341-0652
ミヤコグサゲノム情報を利用したマメ科植物の比較ゲノム解析

佐藤修正, 中村保一, 金子貴一, 浅水恵理香, 加藤友彦, 加藤友彦, 笹本茂美, 小野章子, 渡邊安希子, 田畑哲之

日本植物生理学会年会要旨集　47th　2006
ミヤコグサにおけるマメ科特異的フラボノイド生合成酵素遺伝子の構造

嶋田典基, 佐藤修正, 中村保一, 金子貴一, 田畑哲之, 青木俊夫, 綾部真一

植物微生物研究会研究交流会講演要旨集　15th　2006

ISSN： 1341-0652
トマトとユーカリのゲノム塩基配列解析プロジェクトの現状

金子貴一, 佐藤修正, 中村保一, 笹本茂美, 小野章子, 渡邊安希子, 田畑哲之

日本植物生理学会年会要旨集　47th　2006
酵母Two-hybrid法によるミヤコグサ根粒菌タンパク質の相互作用解析

下田宜司, 中村保一, 田畑哲之, 佐藤修正

日本植物生理学会年会要旨集　47th　2006
ミヤコグサSen1遺伝子は共生窒素固定活性の発現に必須である

箱山雅生, 新實香緒里, 山本武史, 磯邉佐和, 佐藤修正, 中村保一, 田畑哲之, 熊谷浩高, 梅原洋佐, KRAUSE Katja, PETERSEN Thomas R., SANDAL Niels, STOUGAARD Jens, 野村美加, 田島茂行, UDVARDI Michael K., UDVARDI Michael K., 川口正代司, 河内宏, 菅沼教生

日本植物生理学会年会要旨集　47th　2006
O-32. Integration of linkage and chromosome maps of red clover(Trifolium pratense L.)(Abstracts of the oral and poster presentations) :

KATAOKA Ryohei, KATO Seiji, ISOBE Sachiko, SATO Shusei, TABATA Satoshi, OHMIDO Nobuko

Chromosome science　9　(4)　127-127　2006
Publisher: Society of Chromosome Research
ISSN： 1344-1051
アカクローバ高密度連鎖地図の作製と比較ゲノム解析

田畑哲之, 佐藤修正, 浅水恵理香, 片岡遼平, 近江戸伸子, 櫻井望, 金子貴一, 中村保一, KLIMENKO Irina, 奥村健治, 磯部祥子

日本植物生理学会年会要旨集　47th　2006
A large scale analysis of protein-protein interactions in Mesorhizobium loti

Y Shimoda, Y Nakamura, S Tabata, S Sato

PLANT AND CELL PHYSIOLOGY　47　S58-S58　2006

ISSN： 0032-0781
Mycorrhiza-induced protease genes in Lotus japonicus

N Takeda, S Kosuta, T Winzer, M Groth, SS Sato, T Kaneko, S Tabata, M Parniske

PLANT AND CELL PHYSIOLOGY　47　S58-S58　2006

ISSN： 0032-0781
Specific interaction between the blue light receptor PixD (BLUF) and PatA type response regulator PixE in cyanobacterium Synechocystis sp PCC 6803

K Okajima, S Sato, Y Ochiai, M Katayama, S Tabata, M Ikeuchi

PLANT AND CELL PHYSIOLOGY　47　S158-S158　2006

ISSN： 0032-0781
A novel fix symbiotic mutant of Lotus japonicus, Ljsym105, shows impaired development and premature deterioration of nodule infected cells and symbiosomes

MS Hossain, Y Umehara, S Sato, T Kaneko, S Tabata, H Kouchi

PLANT AND CELL PHYSIOLOGY　47　S218-S218　2006

ISSN： 0032-0781
Lotus japonicus Sen1 gene is crucial for expression of symbiotic nitrogen fixing activity

T Hakoyama, K Niimi, T Yamamoto, S Isobe, SS Sato, Y Nakamura, S Tabata, H Kumagai, Y Umehara, K Krause, TR Petersen, N Sandal, J Stougaard, M Nomura, S Tajima, MK Udvardi, M Kawaguchi, H Kouchi, N Suganuma

PLANT AND CELL PHYSIOLOGY　47　S59-S59　2006

ISSN： 0032-0781
A large scale genome analysis of a model legume, Lotus japonicus

Y Nakamura, E Asamizu, T Kaneko, T Kato, S Sato, S Tabata

PLANT AND CELL PHYSIOLOGY　47　S84-S84　2006

ISSN： 0032-0781
Systematic functional characterization of transcription factors whose expression is induced in the nodulation process of a model leguminous plant, Lotus japonicus

E Asamizu, H Kouchi, J Perry, T Wang, M Parniske, T Nakagawa, M Kawaguchi, S Tabata, S Sato

PLANT AND CELL PHYSIOLOGY　47　S171-S171　2006

ISSN： 0032-0781
Disruption of both AtMID1A and AtMID1B increases the Mg2+-sensitivity of Arabidopsis plants in a Ca2+-dependent manner

T Yamanaka, Y Nakagawa, A Terashima, T Katagiri, A Kishigami, T Furuichi, H Tatsumi, S Sato, T Kato, S Tabata, Kojima, I, K Iida, M Sokabe, K Shinozaki, H Iida

PLANT AND CELL PHYSIOLOGY　47　S34-S34　2006

ISSN： 0032-0781
Molecular cloning of LjSym101 that is required for rhizobial infection and nodule organogenesis

S Shibata, WL Chen, SS Sato, T Kaneko, N Sandal, J Stougaard, S Tabata, Y Umehara, H Kouchi

PLANT AND CELL PHYSIOLOGY　47　S58-S58　2006

ISSN： 0032-0781
Comprehensive structural analysis of the genome of red clover (Trifolium pratense L.)

S Tabata, S Sato, E Asamizu, R Kataoka, N Ohmido, N Sakurai, T Kaneko, Y Nakamura, Klimenko, I, K Okumura, S Isobe

PLANT AND CELL PHYSIOLOGY　47　S243-S243　2006

ISSN： 0032-0781
Comparative genome analysis of Lotus japonicus and other legumes

S Sato, Y Nakamura, T Kaneko, E Asamizu, T Kato, S Sasamoto, A Ono, A Watanabe, S Tabata

PLANT AND CELL PHYSIOLOGY　47　S84-S84　2006

ISSN： 0032-0781
Functional characterization of a Ca2+-permeable, stretch-activated channel candidate in Arabidopsis

Y Nakagawa, T Katagiri, K Shinozaki, Z Qi, T Furuichi, A Kishigami, H Tatsumi, M Sokabe, S Sato, T Kato, S Tabata, Kojima, I, K Iida, A Terashima, M Nakano, M Ikeda, T Yamanaka, H Iida

PLANT AND CELL PHYSIOLOGY　47　S34-S34　2006

ISSN： 0032-0781
Current status of genome sequencing projects of tomato and eucalyptus

T Kaneko, S Sato, Y Nakamura, S Sasamoto, A Ono, A Watanabe, S Tabata

PLANT AND CELL PHYSIOLOGY　47　S243-S243　2006

ISSN： 0032-0781
Expression analysis of LjPDR12, a Lotus japonicus PDR-type ABC protein gene

A Sugiyama, N Shitan, S Sato, S Tabata, K Yazaki

PLANT AND CELL PHYSIOLOGY　47　S202-S202　2006

ISSN： 0032-0781
Nucleolin is essential for growth in Arabidopsis thaliana

H Kojima, T Suzuki, S Sato, T Kato, S Tabata, K Nakamura

PLANT AND CELL PHYSIOLOGY　47　S183-S183　2006

ISSN： 0032-0781
根粒菌からみた共生システム

南澤究, 佐伯和彦, 佐藤修正, 下田宜司

蛋白質・核酸・酵素　51　2006
植物にもラノステロール合成酵素が存在する (第15回天然薬物の開発と応用シンポジウム講演要旨集) -- (一般講演)

澤井学, 佐藤修正, 金子貴一

薬学雑誌　125　196-199　2005/11/10
Publisher: 日本薬学会
ISSN： 0031-6903
8-11 菌根・根粒共生に関わるミヤコグサLjSYM85の解析(8.共生,日本土壌肥料学会 2005年度大会講演要旨集)

斎藤勝晴, 吉川真琴, 矢野幸司, 林誠, 室岡義勝, 佐藤修正, 田畑哲之, 今泉(安楽) 温子, 梅原洋佐, 河内宏, 川口正代司

日本土壌肥料学会講演要旨集　(51)　52-52　2005/09/06
Publisher: 一般社団法人日本土壌肥料学会
ISSN： 0288-5840
シロイヌナズナのCa²⁺透過性伸展活性化陽イオンチャネルの候補遺伝子AtMID1Bの機能解析

山中拓哉, 中川祐子, 片桐健, 古市卓也, 佐藤修正, 飯田和子, 小島至, 曽我部正博, 篠崎一雄

日本植物生理学会年会要旨集　46th　2005
ミヤコグサゲノム情報を利用した比較ゲノム解析

佐藤修正, 中村保一, 金子貴一, 浅水恵理香, 加藤友彦, 加藤友彦, 笹本茂美, 小野章子, 渡辺安希子, 田畑哲之

日本分子生物学会年会講演要旨集　28th　2005
ミヤコグサ Lotus japonicus ゲノム構造解析プロジェクトの進捗

中村保一, 浅水恵理香, 金子貴一, 加藤友彦, 佐藤修正, 笹本茂美, 村木章子, 渡辺安希子, 中山しのぶ, 田畑哲之

日本分子生物学会年会講演要旨集　28th　2005
酵母two-hybrid大規模解析系を用いたミヤコグサ根粒菌遺伝子産物の相互作用解析

佐藤修正, 中村保一, 田畑哲之

植物微生物研究会研究交流会講演要旨集　14th　2005

ISSN： 1341-0652
有用植物(トマト,ユーカリ)のゲノムシークエンシングプロジェクト

金子貴一, 佐藤修正, 中村保一, 笹本茂美, 小野章子, 渡辺安希子, 田畑哲之

日本分子生物学会年会講演要旨集　28th　2005
ミヤコグサの比較ゲノム解析

佐藤修正, 中村保一, 金子貴一, 浅水恵理香, 加藤友彦, 田畑哲之

日本植物生理学会年会要旨集　46th　2005
ユーカリのゲノム塩基配列決定プロジェクト

金子貴一, 佐藤修正, 中村保一, 田畑哲之

日本植物生理学会年会要旨集　46th　2005
ミヤコグサゲノムの大規模構造解析の進捗

中村保一, 浅水恵理香, 金子貴一, 加藤友彦, 佐藤修正, 田畑哲之

日本植物生理学会年会要旨集　46th　2005
酵母two-hybrid解析系を用いたミヤコグサ根粒菌遺伝子産物の相互作用解析

下田宜司, 中村保一, 田畑哲之, 佐藤修正

日本分子生物学会年会講演要旨集　28th　2005
Growth defect of Arabidopsis mutant which lack vacuolar H+-pyrophosphatase.

Y Nakanishi, S Wakami, M Inagaki, A Morikami, T Kato, S Tabata, S Sato, M Maeshima

PLANT AND CELL PHYSIOLOGY　46　S101-S101　2005

ISSN： 0032-0781
アカクローバの高密度連鎖地図の作成と開花特性に関するQTL解析

磯部祥子, 佐藤修正, 浅水恵理香, KLIMENKO Irina, KOZLOV Nicolai N, 奥村健治, 田畑哲之

日本草地学会誌　51　2005

ISSN： 0447-5933
マメ科モデル植物ミヤコグサ(Lotus japonicus)の形態等特性に関するQTL解析

権藤崇裕, 磯部祥子, 佐藤修正, 笹本茂美, 加藤友彦, 広井清貞, 奥村健治, 田畑哲之

北海道草地研究会報　(39)　2005

ISSN： 0910-8343
ゲノム構造比較と育種に向けたマメ科植物共通DNAマーカーの整備

久野裕, 笹本茂美, 磯部祥子, 佐藤修正, 原田久也, 中村保一, 田畑哲之

日本分子生物学会年会講演要旨集　28th　2005
アカクローバゲノムの構造解析

田畑哲之, 佐藤修正, 浅水理恵香, 片平遼平, 近江戸伸子, 笹本茂美, 桜井望, 金子貴一, 中村保一, 渡辺安希子, KLIMENKO Irina, 奥村健治, 磯部祥子

日本分子生物学会年会講演要旨集　28th　2005
Isolation and characterization of a mate-sterile mojyao mutant of Arabidopsis thaliana

T Ariizumi, K Hatakeyama, K Hinata, S Sato, T Kato, S Tabata, K Toriyama

PLANT AND CELL PHYSIOLOGY　46　S27-S27　2005

ISSN： 0032-0781
A stretch-activated calcium-permeable channel in Arabidopsis

H Iida, Y Nakagawa, T Katagiri, Z Qi, H Tatsumi, T Furuichi, A Kishigami, S Sato, T Kato, S Tabata, Kojima, I, K Iida, A Terashima, M Ikeda, T Yamanaka, K Shinozaki, M Sokabe

PLANT AND CELL PHYSIOLOGY　46　S22-S22　2005

ISSN： 0032-0781
Comparative genome analysis of Lotus japonicus

S Sato, Y Nakamura, T Kaneko, E Asamizu, T Kato, S Tabata

PLANT AND CELL PHYSIOLOGY　46　S137-S137　2005

ISSN： 0032-0781
Plant autophagy: Autophagy-defective mutants exhibit early senescence

K Yoshimoto, H Hanaoka, S Sato, T Kato, S Tabata, T Noda, Y Ohsumi

PLANT AND CELL PHYSIOLOGY　46　S18-S18　2005

ISSN： 0032-0781
Characterization of a novel Lotus japonicus symbiotic mutant, Lot1, that shows reduced nodule numberand distorted trichomes

Y Ooki, M Banba, K Yano, J Maruya, S Sato, S Tabata, K Saeki, M Hayashi, M Kawaguchi, K Izui, S Hata

Biological Nitrogen Fixation, Sustainable Agriculture and the Environment　41　233-233　2005
Isolation and characterization of polyubiquitin promoter in Lottus japonicus for gene expression system

M Kusakabe, T Maekawa, S Sato, S Tabata, Y Murooka, M Hayashi

PLANT AND CELL PHYSIOLOGY　46　S122-S122　2005

ISSN： 0032-0781
A large-scale genome analysis of Eucalyptus camaldulensis

T Kaneko, S Sato, Y Nakamura, S Tabata

PLANT AND CELL PHYSIOLOGY　46　S136-S136　2005

ISSN： 0032-0781
Map-based cloning of crinkle, which is required for infection thread development

T Hio, M Tansengco, K Yano, S Sato, S Tabata, M Kawaguchi, Y Murooka, M Hayashi

PLANT AND CELL PHYSIOLOGY　46　S123-S123　2005

ISSN： 0032-0781
Functional analysis of transcription factors whose expression is induced in the nodulation process of a model leguminous plant, Lotus japonicus

E Asamizu, S Sato, S Tabata

PLANT AND CELL PHYSIOLOGY　46　S122-S122　2005

ISSN： 0032-0781
Functional characterization of the Arabidopsis AtMID1B gene encoding a putative Ca2+-permeable, stretch-activated channel

T Yamanaka, Y Nakagawa, A Terashima, T Katagiri, A Kishigami, T Furuichi, H Tatsumi, S Sato, T Kato, S Tabata, K Iida, Kojima, I, M Sokabe, K Shinozaki, H Iida

PLANT AND CELL PHYSIOLOGY　46　S158-S158　2005

ISSN： 0032-0781
Current status of a large scale genome analysis of a model legume, Lotus japonicus.

Y Nakamura, E Asamizu, T Kaneko, T Kato, S Sato, S Tabata

PLANT AND CELL PHYSIOLOGY　46　S136-S136　2005

ISSN： 0032-0781
Plant autophagy: Autophagy-defective mutants exhibit early senescence

K Yoshimoto, H Hanaoka, S Sato, T Kato, S Tabata, T Noda, Y Ohsumi

PLANT AND CELL PHYSIOLOGY　46　S155-S155　2005

ISSN： 0032-0781
LjSYM30, the final gene of common signaling pathway is required for invasion of rhizobia and arbuscular mycorrhizal fungi

K Yano, K Vickers, S Sato, S Tabata, M Kawaguchi, Y Murooka, M Parniske, M Hayashi

PLANT AND CELL PHYSIOLOGY　46　S5-S5　2005

ISSN： 0032-0781

eISSN： 1471-9053
Involvement of stress, nitric oxide and rhizobial symbiosis on expression of globin gene family in Lotus japonicus

Y Shimoda, M Nagata, F Furuya, A Suzuki, M Abe, S Sato, T Kato, S Tabata, S Higashi, T Uchiumi

Biological Nitrogen Fixation, Sustainable Agriculture and the Environment　41　330-330　2005
Structures and functions of chalcone polyketide reductase genes in Lotus japonicus

N Shimada, S Sato, T Nakatsuka, Y Nakamura, M Nishihara, K Mishiba, S Yamamura, S Tabata, SI Ayabe, T Aoki

PLANT AND CELL PHYSIOLOGY　46　(0)　S52-S52　2005

ISSN： 0032-0781
ゲノミクス解析システムゲノム構造解析システム (バイオ高性能機器・新技術利用マニュアル) -- (生体高分子の包括的解析のためのシステム)

佐藤修正, 近江戸伸子, 中村保一

蛋白質核酸酵素　49　(11)　1828-1833,1459　2004/08
Publisher: 共立出版
ISSN： 0039-9450
シロイヌナズナのCa²⁺透過性伸展活性化陽イオンチャネル候補AtMID1Aの接触刺激応答における機能解析

中川祐子, 片桐健, 篠崎一雄, ZHI Q, 古市卓也, 曽我部正博, 佐藤修正, 小島至, 飯田和子

日本分子生物学会年会プログラム・講演要旨集　27th　2004
シロイヌナズナのCa²⁺透過性伸展活性化陽イオンチャネル候補AtMID1Aの発現と局在

寺島明日香, 中川祐子, 片桐健, 篠崎一雄, ZHI Q, 古市卓也, 佐藤修正, 小島至, 飯田和子

日本分子生物学会年会プログラム・講演要旨集　27th　2004
シロイヌナズナのCa²⁺透過性伸展活性化陽イオンチャネル遺伝子の単離と機能解析

中川祐子, 片桐健, 篠崎一雄, 戚智, 岸上明生, 古市卓也, 佐藤修正, 小島至, 飯田和子子

日本植物生理学会年会要旨集　45th　2004
ミヤコグサ Lotus japonicus ゲノムの大規模構造解析の推捗

中村保一, 浅水恵理香, 金子貴一, 加藤友彦, 佐藤修正, 田畑哲之

日本分子生物学会年会プログラム・講演要旨集　27th　2004
ユーカリのゲノム塩基配列決定プロジェクト

金子貴一, 佐藤修正, 中村保一, 田畑哲之

日本分子生物学会年会プログラム・講演要旨集　27th　2004
酵母two-hybrid大規模解析系を用いたラン藻遺伝子産物の相互作用推定

佐藤修正, 中村保一, 田畑哲之

日本植物生理学会年会要旨集　45th　2004
酵母two-hybrid大規模解析系を用いたミヤコグサ根粒菌遺伝子産物の相互作用解析

佐藤修正, 中村保一, 田畑哲之

日本分子生物学会年会プログラム・講演要旨集　27th　2004
アカクローバ高密度連鎖地図の作製

田畑哲之, 磯部祥子, IRINA K, 近江戸伸子, 桜井望, 佐藤修正

日本分子生物学会年会プログラム・講演要旨集　27th　2004
The Arabidopsis TCP16 gene encoding a putative transcription factor is essential for pollen development as a gametophytically acting factor

T Takeda, K Amano, C Nishimura, M Ohto, K Nakamura, S Sato, T Kato, S Tabata, C Ueguchi

PLANT AND CELL PHYSIOLOGY　45　S73-S73　2004

ISSN： 0032-0781
Functions of nonsymbiotic globin genes in Lotus japonicus

Y Shimoda, A Suzuki, M Abe, S Higashi, S Sato, S Tabata, T Uchiumi

PLANT AND CELL PHYSIOLOGY　45　S171-S171　2004

ISSN： 0032-0781
A large scale analysis of protein-protein interactions in Synechocystis sp PCC 6803

S Sato, Y Nakamura, S Tabata

PLANT AND CELL PHYSIOLOGY　45　S37-S37　2004

ISSN： 0032-0781
PamA, a novel PII binding protein, is involved in the transcriptions of nitrogen-related genes from phase-II.

T Osanai, S Sato, S Tabata, T Omata, K Tanaka

PLANT AND CELL PHYSIOLOGY　45　S195-S195　2004

ISSN： 0032-0781
Functional analysis of Sed5-like gene in Lotus japonicus

TH Mai, M Nomura, Y Hirashima, M Isomoto, E Okamoto, E Asamizu, S Sato, T Kato, S Tabata, K Takegawa, S Tajima

PLANT AND CELL PHYSIOLOGY　45　S169-S169　2004

ISSN： 0032-0781
TRINITY controls nodulation and mycorrhization concomitantly in Lotus japonicus

H Imaizumi-Anraku, N Takeda, Y Umehara, Y Murakami, M Yoshikawa, S Sato, E Asamizu, S Tabata, M Charpentier, L Mulder, J Perry, M Parniske, Y Murooka, H Kouchi, M Kawaguchi, M Hayashi, S Kawasaki

PLANT AND CELL PHYSIOLOGY　45　S137-S137　2004

ISSN： 0032-0781
Isolation and functional characterization of an Arabidopsis cDNA encoding a putative Ca2+-permeable stretch-activated channel

Y Nakagawa, T Katagiri, K Shinozaki, Z Qi, A Kishigami, T Furuichi, H Tatsumi, M Sokabe, S Sato, T Kato, S Tabata, Kojima, I, K Iida, M Ikeda, T Yamanaka, H Iida

PLANT AND CELL PHYSIOLOGY　45　S182-S182　2004

ISSN： 0032-0781
Large-scale gene expression analysis of the Lotus japonicus nodulation process by SAGE, and analysis of the promoter region responsible for the induction

E Asamizu, Y Nakamura, S Sato, S Tabata

PLANT AND CELL PHYSIOLOGY　45　S202-S202　2004

ISSN： 0032-0781
A soluble ABC protein, GCN, regulate root development in Arabidopsis

T Kato, S Sato, S Tabata

PLANT AND CELL PHYSIOLOGY　45　S2-S2　2004

ISSN： 0032-0781
Genetic analysis of infection thread mutants in Lotus japonicus

M Hayashi, M Tansengco, K Yano, H Imaizumi-Anraku, S Kawasaki, S Sato, S Tabata, M Kawaguchi, Y Murooka

PLANT AND CELL PHYSIOLOGY　45　S138-S138　2004

ISSN： 0032-0781
Functional analysis of Arabidopsis AtREV1 and AtREV7 genes which are involved in the error-prone TLS

S Takahashi, A Sakamoto, S Sato, T Kato, S Tabata, A Tanaka

PLANT AND CELL PHYSIOLOGY　45　S146-S146　2004

ISSN： 0032-0781
Phenotypic and genetic analysis of the Lotus japonicus symbiotic mutant 56M

H Kumagai, Y Umehara, S Sato, T Kaneko, S Tabata, H Kouchi

PLANT AND CELL PHYSIOLOGY　45　S187-S187　2004

ISSN： 0032-0781
Current status of a large scale genome analysis of a model legume, Lotus japonicus.

Y Nakamura, T Kaneko, E Asamizu, T Kato, S Sato, S Tabata

PLANT AND CELL PHYSIOLOGY　45　S37-S37　2004

ISSN： 0032-0781
Analysis of TRINITY gene that governs rhizobial and mycorrhizal symbioses

N Takeda, H Imaizumi-Anraku, GJ Wu, Y Umehara, Y Murakami, M Yoshikawa, S Sato, E Asamizu, S Tabata, M Charpentier, L Mulder, J Perry, M Parniske, Y Murooka, H Kouchi, M Kawaguchi, S Kawasaki, M Hayashi

PLANT AND CELL PHYSIOLOGY　45　S138-S138　2004

ISSN： 0032-0781
SYM82 of Lotus japonicus is required for symbiosis of rhizobia and arbuscular mycorrhizal fungi

K Yano, K Vickers, J Perry, S Sato, E Asamizu, S Tabata, M Kawaguchi, Y Murooka, M Parniske, M Hayashi

PLANT AND CELL PHYSIOLOGY　45　S138-S138　2004

ISSN： 0032-0781

eISSN： 1471-9053
Isolation and characterization of novel male-sterile nef1 mutant of Arabidopsis thaliana.

T Ariizumi, K Hatakeyama, K Hinata, R Inatsugi, Nishida, I, S Sato, T Kato, S Tabata, K Toriyama

PLANT AND CELL PHYSIOLOGY　45　S74-S74　2004

ISSN： 0032-0781
Analysis of Arabidopsis ATG8 family proteins involved in autophagy, a vacuolar degradation process

K Yoshimoto, H Hanaoka, S Sato, K Tomohiko, S Tabata, T Noda, Y Ohsumi

PLANT AND CELL PHYSIOLOGY　45　S110-S110　2004

ISSN： 0032-0781
Complete genome structure of the unicellular cyanobacterium Gloeobacter violaceus PCC 7421

T Kaneko, Y Nakamura, S Sato, M Mimuro, H Miyashita, T Tsuchiya, S Tabata

PLANT AND CELL PHYSIOLOGY　45　(0)　S129-S129　2004

ISSN： 0032-0781
シロイヌナズナ・ジーントラップラインにおける根維管束に特異的な遺伝子発現

小松悠太, 黒羽剛, 佐藤修正, 加藤友彦, 田畑哲之, 佐藤忍

根の研究 = Root research　12　(4)　219-219　2003/12/19

ISSN： 0919-2182
シロイヌナズナにおける時計関連APRR1/TOC1ファミリーの五重奏:APRR9の機能解析

伊藤照悟, 松鹿昭則, 山田寿美, 佐藤修正, 加藤友彦, 田畑哲之, 山篠貴史, 水野猛

日本分子生物学会年会プログラム・講演要旨集　26th　745　2003/11/25
単細胞性ラン藻Gloeobacter violaceus PCC 7421のゲノム構造解析

金子貴一, 中村保一, 佐藤修正, 三室守, 宮下英明, 土屋徹, 田畑哲之

日本分子生物学会年会プログラム・講演要旨集　26th　464　2003/11/25
ミヤコグサのオキシドスクアレン閉環酵素遺伝子の解析 (第14回天然薬物の開発と応用シンポジウム講演要旨集) -- (一般講演遺伝子工学を用いた有効成分の生産)

澤井学, 綾部真一, 佐藤修正

薬学雑誌　123　196-199　2003/11/06
Publisher: 日本薬学会
ISSN： 0031-6903
ミヤコグサ(Lotus japonicus)ゲノムの大規模構造解析の進捗

中村保一, 金子貴一, 浅水恵理香, 加藤友彦, 佐藤修正, 田畑哲之

日本分子生物学会年会プログラム・講演要旨集　26th　2003
ダイズ根粒菌Bradyrhizobium japonicumのゲノム構造解析

金子貴一, 中村保一, 佐藤修正, 南沢究, 内海俊樹, 田畑哲之

日本農芸化学会大会講演要旨集　2003　2003
酵母two-hybrid大規模解析系を用いたラン藻機能未知遺伝子産物の相互作用推定

佐藤修正, 中村保一, 田畑哲之

日本分子生物学会年会プログラム・講演要旨集　26th　2003
Characterization of type-A ARRs implicated in phosphorelay signal transduction in A-thaliana

K TakatoshiaAo, H Yamada, T Kato, S Sato, S Tabata, T Mizuno

PLANT AND CELL PHYSIOLOGY　44　S125-S125　2003

ISSN： 0032-0781
Characterization of a novel family of WNK protein kinases with reference to circadian rhythms in A.thaliana.

Y Kishi, N Nakamichi, M Kojima, T Yamashino, T Kato, S Sato, S Tabata, T Mizuno

PLANT AND CELL PHYSIOLOGY　44　S35-S35　2003

ISSN： 0032-0781
Characterization of type-B response regulators implicated in His-Asp phosphorrelay signal transduction in A-thaliana

Y Tajima, A Imamura, T Kiba, H Yamada, T Kato, S Sato, S Tabata, T Mizuno

PLANT AND CELL PHYSIOLOGY　44　S125-S125　2003

ISSN： 0032-0781
Structures of the genes involved in 5-deoxyisoflavonoid biosynthesis in Lotus japonicus

N Shimada, T Aoki, S Sato, T Kaneko, S Tabata, S Ayabe

PLANT AND CELL PHYSIOLOGY　44　S96-S96　2003

ISSN： 0032-0781
Global gene expression analysis of the Lotus japonicus nodulation process by SAGE, and generation of novel 3 ' cDNA fragments

E Asamizu, Y Nakamura, S Sato, S Tabata

PLANT AND CELL PHYSIOLOGY　44　S131-S131　2003

ISSN： 0032-0781
Progress in Lotus japonicus genome sequencing project

S Sato, Y Nakamura, T Kaneko, E Asamizu, T Kato, S Tabata

PLANT AND CELL PHYSIOLOGY　44　S132-S132　2003

ISSN： 0032-0781
Functional analysis of Arabidopsis TCP10 gene

T Takeda, T Kato, S Sato, S Tabata, C Ueguchi

PLANT AND CELL PHYSIOLOGY　44　S147-S147　2003

ISSN： 0032-0781
Analysis of T-DNA insertion mutants of 3-hydroxy-3-methylglutaryl-CoA reductase genes in Arabidopsis

Y Kamide, M Suzuki, N Nagata, H Kato, S Sato, T Kato, S Tabata, S Yoshida, T Muranaka

PLANT AND CELL PHYSIOLOGY　44　S185-S185　2003

ISSN： 0032-0781
The APRR1/TOC1 family of circadian-related genes in Arabidopsis thaliana: Functional analysis of APRR5

E Sato, N Nakamichi, T Yamashino, T Kato, S Sato, S Tabata, T Mizuno

PLANT AND CELL PHYSIOLOGY　44　S34-S34　2003

ISSN： 0032-0781
High-temperature injury to early development of tapetum cells in barley Hordeum vulgare L.

M Abiko, T Sakata, H Takahashi, E Asamizu, S Sato, S Tabata, M Kihara, K Ito, A Higashitani

PLANT AND CELL PHYSIOLOGY　44　S135-S135　2003

ISSN： 0032-0781
Functional analysis of GCN proteins by gene trap mutagenesis in Arabidopsis

T Kato, S Sato, S Tabata

PLANT AND CELL PHYSIOLOGY　44　S130-S130　2003

ISSN： 0032-0781
Complete genome structure of the thylakoid-less cyanobacterium Gloeobacter violaceus PCC 7421

T Kaneko, Y Nakamura, S Sato, S Tabata

PLANT AND CELL PHYSIOLOGY　44　S118-S118　2003

ISSN： 0032-0781
Analysis of AtAPG8 families in plant autophagy

K Yoshimoto, H Hanaoka, T Noda, S Sato, T Kato, S Tabata, Y Ohsumi

PLANT AND CELL PHYSIOLOGY　44　S202-S202　2003

ISSN： 0032-0781
Characterization of HPt factors (AHP) implicated in His-Asp phosphorelay signal transduction in A-thaliana

Y Tanaka, T Suzuki, T Kato, S Sato, S Tabata, T Mizuno

PLANT AND CELL PHYSIOLOGY　44　S125-S125　2003

ISSN： 0032-0781
Relation between bHLH factors and clock mechanism in Arabidopsis thaliana

T Yamashino, T Fujimori, S Sato, T Kato, S Tabata, T Mizuno

PLANT AND CELL PHYSIOLOGY　44　S35-S35　2003

ISSN： 0032-0781
A trans-zeatin riboside in root xylem sap negatively regulates adventitious root formation on cucumber hypocotyls. International-journal

Takeshi Kuroha, Hisashi Kato, Tadao Asami, Shigeo Yoshida, Hiroshi Kamada, Shinobu Satoh

Journal of experimental botany　53　(378)　2193-200　2002/11

DOI： 10.1093/jxb/erf077 　

ISSN： 0022-0957
ゲノム解析の進展「ポストゲノムシークエンス」時代のシロイヌナズナゲノム解析 (植物の形づくり--遺伝子からみた分子メカニズム) -- (研究方法の進展)

加藤友彦, 佐藤修正, 田畑哲之

蛋白質核酸酵素　47　(12)　1506-1511　2002/09
Publisher: 共立出版
ISSN： 0039-9450
Improved salt tolerance in Arabidopsis by overexpression of an STO gene, and screening of a sto mutant.

NAGAOKA S., SATO S., KATO T., TABATA S., NAKAMURA M., NAGATANI A., TAKANO T.

4　(1)　239-239　2002/03/30

ISSN： 1344-7629
ミヤコグサにおけるジヒドロフラボノール還元酵素のアントシアニンおよび縮合型タンニン生合成への関与

佐々木亮介, 嶋田典基, 青木俊夫, 佐藤修正, 中村保一, 田畑哲之, 綾部真一

植物微生物研究会研究交流会講演要旨集　12th　2002

ISSN： 1341-0652
ミヤコグサ(Lotus japonicus)のジヒドロフラボノール還元酵素遺伝子の構造と発現

嶋田典基, 佐々木亮介, 青木俊夫, 佐藤修正, 中村保一, 田畑哲之, 綾部真一

日本植物学会大会研究発表記録　66th　2002
ミヤコグサのゲノム構造解析

田畑哲之, 金子貴一, 中村保一, 浅水恵理香, 加藤友彦, 佐藤修正

生化学　74　(8)　2002

ISSN： 0037-1017
ミヤコグサのファイトアレキシン生合成系遺伝子

嶋田典基, 明石智義, 青木俊夫, 佐藤修正, 中村保一, 田畑哲之, 綾部真一

植物微生物研究会研究交流会講演要旨集　12th　2002

ISSN： 1341-0652
ラン藻ゲノム構造解析と構造比較

金子貴一, 中村保一, 佐藤修正, 田畑哲之

日本植物生理学会年会要旨集　42nd　2002
Knockout of Arabidopsis 3-hydroxy-3-methylglutaryl-CoA reductase genes for analyzing mevalonate pathway(Abstracts of The 37th Annual Meeting of the Japanese Society for Chemical Regulation of Plants)

Kamide Yukiko, Suzuki Masashi, Nagata Noriko, Sato Shusei, Kato Tomohiko, Tabata Satoshi, Yoshida Shigeo, Muranaka Toshiya

Regulation of Plant Growth & Development　37　(2)　210-210　2002
Publisher: The Japanese Society for Chemical Regulation of Plants
DOI： 10.18978/jscrp.37.2_210_1 　

ISSN： 1346-5406
KNOCKOUT OF ARABIDOPSIS 3-HYDROXY-3-METHYLGLUTARYL-COA REDUCTASE GENES FOR ANALYZING MEVALONATE PATHWAY

Kamide Yukiko, Suzuki Masashi, Nagata Noriko, Sato Shusei, Kato Tomohiko, Tabata Satoshi, Yoshida Shigeo, Muranaka Toshiya

The Janapese Society for Chemical Regulation of Plants, Abstract　37　33-34　2002
Publisher: The Janapese Society for Chemical Regulation of Plants
DOI： 10.18978/jscrpanb.37.0_33 　

ISSN： 0919-1887

More details Close

In higher plants, isoprenoids are synthesized via mevalonate (MVA) pathway and non-mevalonate (MEP) pathway. These pathways are not independent each other; at least metabolic crosstalk between these pathways exists. Mutants which have a defect on MVA or MEP pathway are effective to understand metabolic flow and crosstalk between the pathway. Arabidopsis cla1 mutant is known as a MEP pathway mutant, however, effective MVA pathway mutant is not known. Arabidopsis has two genes (HMG1,HMG2) encoding 3-hydroxy-3-methylglutaryl-CoA reductase (HMGR). We screened Arabidopsis T-DNA tagged lines and isolated two lines of hmg1 and one line of hmg2 mutant. (Fig. 1) In hmg1 seedling, the elongation of roots and hypocotyl was inhibited under dark condition and the development of leaves was also inhibited under light condition. This phenotype is similar to that of lovastatin (inhibitor of HMGR) treated to wild type Arabidopsis plants. In reproductive phase, the flower stork of hmg1 showed remarkable dwarf phenotype and sterility. In addition, hmg1 displayed rapid senescence of mature leaves and internodes of flower storks. On the other hands, no phenotypic difference was observed between hmg2 and WT. Considering these results, HMG1 may be involved in the elongation of flower storks, the fertility, and the aging of Arabidopsis plants.
Functional analysis of plastidic dicarboxylate transporters in Arabidopsis thaliana

M Taniguchi, Y Taniguchi, M Kawasaki, S Sato, T Kato, S Tabata, H Miyake, T Sugiyama

PLANT AND CELL PHYSIOLOGY　43　S50-S50　2002

ISSN： 0032-0781
Gene expression analysis of Lotus japonicus nodulation process using the micro-SAGE method

E Asamizu, S Sato, S Tabata

PLANT AND CELL PHYSIOLOGY　43　S207-S207　2002

ISSN： 0032-0781
Studies on physiological function of vacuolar H+-pyrophosphatase with a T-DNA insertion mutant

S Wakami, Y Nakanishi, M Inagaki, A Morikami, T Suzuki, T Kato, S Tabata, S Sato, M Maeshima

PLANT AND CELL PHYSIOLOGY　43　S101-S101　2002

ISSN： 0032-0781
High-temperature injury and gene expression during development of barley pollen mother cells.

M Abiko, T Sakata, H Takahashi, E Asamizu, S Sato, S Tabata, K Ito, A Higashitani

PLANT AND CELL PHYSIOLOGY　43　S33-S33　2002

ISSN： 0032-0781
Functional analysis of the histidine kinase, CKII.

K Kinoshita, Y Hashimoto, T Kato, S Sato, S Tabata, T Kakimoto

PLANT AND CELL PHYSIOLOGY　43　S33-S33　2002

ISSN： 0032-0781
Functional analysis of Arabidopsis TCP gene family

T Takeda, S Sato, T Kato, S Tabata, C Ueguchi

PLANT AND CELL PHYSIOLOGY　43　S137-S137　2002

ISSN： 0032-0781
Complete genomic sequences and comparative analyses of cyanobacteria

T Kaneko, Y Nakamura, S Sato, S Tabata

PLANT AND CELL PHYSIOLOGY　43　S123-S123　2002

ISSN： 0032-0781
A large scale genome analysis of Lotus japonicus - I. Genome sequencing and mapping

S Sato, Y Nakamura, T Kaneko, T Kato, E Asamizu, S Tabata

PLANT AND CELL PHYSIOLOGY　43　S124-S124　2002

ISSN： 0032-0781
Functional analysis of a ribosomal protein gene involved in gynoecium development

T Nishimura, T Wada, S Sato, T Kato, S Tabata, K Okada

PLANT AND CELL PHYSIOLOGY　43　S181-S181　2002

ISSN： 0032-0781
A large scale genome analysis of Lotus japonicus - II. Annotation pipeline and WWW database

Y Nakamura, S Sato, T Kaneko, E Asamizu, T Kato, S Tabata

PLANT AND CELL PHYSIOLOGY　43　S124-S124　2002

ISSN： 0032-0781
Expression analysis by gene trap mutagenesis in Arabidopsis thaliana

T Kato, S Sato, S Tabata

PLANT AND CELL PHYSIOLOGY　43　S209-S209　2002

ISSN： 0032-0781
Function of phosphatidylglycerol in Arabidopsis thaliana

M Hagio, Sakurai, I, S Sato, T Kato, S Tabata, H Wada

PLANT AND CELL PHYSIOLOGY　43　S149-S149　2002

ISSN： 0032-0781
Regulatory mechanisms of plant development through cytokinins.

T Kakimoto, K Miyawaki, M Higuti, T Inoue, K Kinoshita, M Matsumoto, T Kato, S Sato, S Tabata

PLANT AND CELL PHYSIOLOGY　43　S19-S19　2002

ISSN： 0032-0781
シロイヌナズナゲノムの機能解析 (ゲノムサイエンスの新たなる挑戦) -- (第2部ゲノムの機能解析から生命の多様性に迫る 4.植物)

佐藤修正, 加藤友彦, 田畑哲之

蛋白質核酸酵素　46　(16)　2493-2498　2001/12
Publisher: 共立出版
ISSN： 0039-9450
マメ科のモデル植物ミヤコグサのゲノム解析

佐藤修正, 金子貴一, 中村保一, 浅水恵理香, 加藤友彦, 田畑哲之

日本植物生理学会年会要旨集　41st　2001
ミヤコグサ根粒菌Mesorhizobium lotiのゲノム塩基配列解析

中村保一, 金子貴一, 佐藤修正, 田畑哲之

日本植物生理学会年会要旨集　41st　2001
Comparison and characterization of cis-regulatory regions in some embryo-specific and ABA-responsive carrot genes, DcECPs

Sukmin Ko, Siripong Thitamadee, Heping Yang, Chang-Ho Eun, Kimiyo Sage-Ono, Katsumi Higashi, Shinobu Satoh, Hiroshi Kamada

Plant Biotechnology　18　(1)　45-54　2001
Publisher: Japanese Society for Plant Cell and Molecular Biology
DOI： 10.5511/plantbiotechnology.18.45 　

ISSN： 1347-6114 1342-4580
A large scale genome analysis of Lotus japonicus :

Sato Shusei, Kaneko Takakazu, Nakamura Yasukazu, Asamizu Erika, Katoh Tomohiko, Tabata Satoshi

Plant and cell physiology　42　s189　2001
Publisher: Japanese Society of Plant Physiologists
ISSN： 0032-0781
GENOME SEQUENCE ANALYSIS OF Mesorhizobium loti : A SYMBIONT OF Lotus japanicus :

NAKAMURA Yasukazu, KANEKO Takakazu, SATO Shusei, TABATA Satoshi

Plant and cell physiology　42　s189　2001
Publisher: Japanese Society of Plant Physiologists
ISSN： 0032-0781
LARGE-SCALE STRUCTURAL ANALYSIS OF cDNAs IN MODEL PLANT SPECIES :

ASAMIZU Erika, NAKAMURA Yasukazu, MIURA Kenji, KUCHO Kenichi, INOUE Yoshihiro, FUKUZAWA Hideya, NAKAJIMA Maiko, SAGA Naotsune, SATO Shusei, TABATA Satoshi

Plant and cell physiology　42　s190　2001
Publisher: Japanese Society of Plant Physiologists
ISSN： 0032-0781
ゲノム情報モデル植物シロイヌナズナのゲノム塩基配列決定

佐藤修正, 田畑哲之

蛋白質核酸酵素　46　(1)　61-65　2001/01
Publisher: 共立出版
ISSN： 0039-9450
シロイヌナズナゲノムプロジェクトゲノム塩基配列決定と全塩基配列再注釈の進行状況

中村保一, 金子貴一, 加藤友彦, 佐藤修正, 浅水恵理香, 小谷博一, 田畑哲之

日本植物生理学会年会要旨集　40th　2000
シロイヌナズナ,ミヤコグサ,クラミドモナス,スサビノリのEST解析

浅水恵理香, 中村保一, 佐藤修正, 福沢秀哉, 中嶋舞子, 田畑哲之

日本植物生理学会年会要旨集　40th　2000
マメ科植物ミヤコグサ,ミヤコグサ根粒菌のゲノム解析

田畑哲之, 金子貴一, 中村保一, 浅水恵理香, 加藤友彦, 佐藤修正

日本分子生物学会年会プログラム・講演要旨集　23rd　2000
シロイヌナズナゲノムプロジェクト X ゲノム塩基配列構造解析状況と情報公開データベースKAOS

中村保一, 金子貴一, 佐藤修正, 加藤友彦, 浅水恵理香, 小谷博一, 田畑哲之

日本分子生物学会年会プログラム・講演要旨集　23rd　2000
FUNCTIONAL GENOMICS IN Arabidopsis thaliana : EXPRESSION ANALYSIS OF THE TARGET GENES BY GENE AND ENHANCER TRAP MUTAGENESIS :

KATO Tomohiko, SATO Shusei, TABATA Satoshi

Plant and cell physiology　41　s174　2000
Publisher: Japanese Society of Plant Physiologists
ISSN： 0032-0781
The Arabidopsis Genome Project; Current Status of Sequencing and Re-annotation :

NAKAMURA Yasukazu, KANEKO Takakazu, KATO Tomohiko, SATO Shusei, ASAMIZU Erika, KOTANI Hirokazu, TABATA Satoshi

Plant and cell physiology　41　s173　2000
Publisher: Japanese Society of Plant Physiologists
ISSN： 0032-0781
EST analyses of Arabidopsis thaliana, Lotus japonicus, Chlamydomonas reinhardtii, and Porphyra yezoensis :

ASAMIZU Erika, NAKAMURA Yasukazu, SATO Shusei, FUKUZAWA Hideya, NAKAJIMA Maiko, TABATA Satoshi

Plant and cell physiology　41　s173　2000
Publisher: Japanese Society of Plant Physiologists
ISSN： 0032-0781
Functional analysis of Arabidopsis MADS-box gene FRUITFULL :

SATO Shusei, Ferrandiz Cristina, Yanofsky Martin F.

Plant and cell physiology　41　s214　2000
Publisher: Japanese Society of Plant Physiologists
ISSN： 0032-0781
ANALYSIS OF AUTOPHAGY IN HIGHER PLANTS :

HANAOKA Hideki, NODA Takeshi, SHIRANO Yumiko, SATO Shusei, KATO Tomohiko, HAYASHI Hiroaki, SHIBATA Daisuke, TABATA Satoshi, OHSUMI Yoshinori

Plant and cell physiology　41　s32　2000
Publisher: Japanese Society of Plant Physiologists
ISSN： 0032-0781
LARGE SCALE cDNA SEQUENCING OF Arabidopsis thaliana

ASAMIZU Erika, SATO Shusei, NAKAMURA Yasukazu, TABATA Satoshi

40　s29-s29　1999/03

ISSN： 0032-0781
COLLECTION AND UTILIZATION OF T-DNA TAG LINES GENERATED FOR FUNCTIONAL GENOMICS IN Arabidopsis thaliana

KATO Tomohiko, SATO Shusei, TABATA Satoshi

40　s29-s29　1999/03

ISSN： 0032-0781
PROGRESS IN Arabidopsis thaliana GENOME SEQUENCING PROJECT

TABATA Satoshi, KANEKO Takakazu, NAKAMURA Yasukazu, KATO Tomohiko, KOTANI Hirokazu, ASAMIZU Erika, MIYAJIMA Nobuyuki, SATO Shusei

40　s29-s29　1999/03

ISSN： 0032-0781
CELL WALL ANALYSIS OF TEMPERATURE SENSITIVE MUTANT acwl OF A. thaliana

SATO Shigeru, KATO Tomohiko, KAKEGAWA Koichi, ISHII Tadashi, LIU Yao-Guang, TAKABE Keiji, KUGA Shigenori, SATO Shusei, NAKAMURA Yasukazu, TABATA Satoshi, SHIBATA Daisuke

40　s154-s154　1999/03

ISSN： 0032-0781
シロイヌナズナゲノム塩基配列決定プロジェクトの進捗状況

田畑哲之, 金子貴一, 中村保一, 加藤友彦, 小谷博一, 浅水恵理香, 宮嶋伸行, 佐藤修正

日本植物生理学会年会要旨集　39th　1999
シロイヌナズナ,ミヤコグサ,クラミドモナス,スサビノリのEST解析

浅水恵理香, 中村保一, 佐藤修正, 渡辺安希子, 福沢秀哉, 中嶋舞子, 田畑哲之

日本分子生物学会年会プログラム・講演要旨集　22nd　1999
シロイヌナズナのcDNA大規模解析プロジェクト

浅水恵理香, 佐藤修正, 中村保一, 田畑哲之

日本植物生理学会年会要旨集　39th　1999
シロイヌナズナゲノムプロジェクト IX. ゲノム塩基配列解析の進行状況

中村保一, 金子貴一, 加藤友彦, 佐藤修正, 小谷博一, 浅水恵理香, 田畑哲之

日本分子生物学会年会プログラム・講演要旨集　22nd　1999
The Arabidopsis genome project ; VIII. Development of integrated sequence information display system

NAKAMURA Yasukazu, SATO Shusei, MIYAJIMA Nobuyuki, TABATA Satoshi

21　236-236　1998/12/01
The Arabidopsis genome project ; VI. Sequence analysis of chromosome 3 and 5

SATO Shusei, KANEKO Takakazu, KOTANI Hirokazu, NAKAMURA Yasukazu, ASAMIZU Erika, KATO Tomohiko, MIYAJIMA Nobuyuki, TABATA Satoshi

21　236-236　1998/12/01
The Arabidopsis genome project VII ; Large scale sequencing of cDNAs

ASAMIZU Erika, SATO Shusei, NAKAMURA Yasukazu, TABATA Satoshi

21　236-236　1998/12/01
Characterization of a C. elegans recA-like gene Ce-rdh-1.

TAKANAMI Takako, TAKAHASHI Hideyuki, SATO Shusei, ISHIHARA Takeshi, KATSURA Isao, HIGASHITANI Atsushi

21　383-383　1998/12/01
THE Arabidopsis GENOME PROJECT IV : A LARGE SCALE cDNA SEQUENCING

ASAMIZU Erika, SATO Shusei, KOTANI Hirokazu, NARUO Kaoru, TABATA Satoshi

39　S116-S116　1998/05

ISSN： 0032-0781
THE Arabidopsis GENOME PROJECT III. SEQUENCE ANALYSIS OF CHROMOSOME III AND V

SATO Shusei, KOTANI Hirokazu, NAKAMURA Yasukazu, ASAMIZU Erika, KANEKO Takakazu, MIYAJIMA Nobuyuki, TABATA Satoshi

39　S116-S116　1998/05

ISSN： 0032-0781
DEVELOPMENT OF HIGH DENSITY GENE FILTER OF Synechocystis sp. PCC6803 GENOME

KANEKO Takakazu, NAKAMURA Yasukazu, SATO Shusei, SASAMOTO Shigemi, TABATA Satoshi

39　S41-S41　1998/05

ISSN： 0032-0781
シロイヌナズナのゲノム解析プロジェクト III. 3番及び5番染色体塩基配列解析

佐藤修正, 小谷博一, 中村保一, 浅水恵理香, 金子貴一, 宮嶋伸行, 田畑哲之

日本植物生理学会年会要旨集　38th(1998)　1998
Characterization; Genome sizes and morphology of sex chromosomes in hemp (Cannabis sativa L.)

Koichi Sakamoto, Yukio Akiyama, Kiichi Fukui, Hiroshi Kamada, Shinobu Satoh

Cytologia　63　(4)　459-464　1998
Publisher: Japan Mendel Society
DOI： 10.1508/cytologia.63.459 　

ISSN： 0011-4545
シロイヌナズナのゲノム解析 (ゲノムサイエンス--生命の全体像の解明をめざして) -- (第2部国際的プロジェクトの動向)

佐藤修正, 小谷博一, 田畑哲之

蛋白質核酸酵素　42　(17)　3078-3080　1997/12
Publisher: 共立出版
ISSN： 0039-9450
Enhanced phosphate uptake in transgenic tobacco cells producing an Arabidopsis high affinity phosphate transporter at high levels.

S Okumura, N Mitsukawa, Y Shirano, S Sato, D Shibata

PLANT PHYSIOLOGY　114　(3)　995-995　1997/07

ISSN： 0032-0889
Arabidopsis genome sequencing project II. Construction of Arabidopsis thaliana genome data opening system

NAKAMURA Yasukazu, MIYAJIMA Nobuyuki, SATO Shusei, KOTANI Hirokazu, KANEKO Takakazu, ASAMIZU Erika, TABATA Satoshi

38　s143　1997/03

ISSN： 0032-0781
Arabidopsis GENOME SEQUENCING PROJECT I. PHYSICAL MAP CONSTRUCTION AND DNA SEQUENCING STRATEGY

SATO Shusei, KOTANI Hirokazu, NAKAMURA Yasukazu, ASAMIZU Erika, KANEKO Takakazu, MIYAJIMA Nobuyuki, TABATA Satoshi

38　s142　1997/03

ISSN： 0032-0781
ENTIRE GENETIC INFORMATION IN Synechocystis sp.strain PCC6803 GENOME

KANEKO Takakazu, KOTANI Hirokazu, SATO Shusei, NAKAMURA Yasukazu, TANAKA Ayako, ASAMIZU Erika, MIYAJIMA Nobuyuki, SUGIURA Masahiro, TABATA Satoshi

38　s16　1997/03

ISSN： 0032-0781
Arabidopsis genome project. IV. Construction of annotation and data opening systems.

中村保一, 宮嶋伸行, 佐藤修正, 田畑哲之

日本分子生物学会年会プログラム・講演要旨集　20th　1997
Genome analysis project for Arabidopsis. II. Development of genome information analysis method and open system of analysis data.

中村保一, 宮嶋伸行, 佐藤修正, 小谷博一, 金子貴一, 浅水恵理香, 田畑哲之

日本植物生理学会年会要旨集　37th(1997)　1997
Blue-green alga ( Synechocystis ). Analysis of all genetic information of sp. strain PCC6803.

金子貴一, 小谷博一, 佐藤修正, 中村保一, 田中亜矢子, 浅水恵理香, 宮嶋伸行, 杉浦昌弘, 田畑哲也

日本植物生理学会年会要旨集　37th(1997)　1997
Genome analysis project for Arabidopsis. I. Preparation of physical map and basic arrangement determination method.

佐藤修正, 小谷博一, 中村保一, 浅水恵理香, 金子貴一, 宮嶋伸行, 田畑哲之

日本植物生理学会年会要旨集　37th(1997)　1997
ラン藻(Synechocystis sp. PCC6803)ゲノムの構造解析 XI. IS様配列の解析

田畑哲之, 金子貴一, 佐藤修正, 田中亜矢子, 浅水恵理香, 杉浦昌弘, 小谷博一

日本分子生物学会年会プログラム・講演要旨集　19　751-751　1996/08/01
ラン藻(Synechocystis sp. stain PCC6803)に存在する3種類の巨大プラスミドの構造解析

浅水恵理香, 金子貴一, 佐藤修正, 小谷博一, 田中亜矢子, 宮島伸行, 杉浦昌弘, 田畑哲之

日本分子生物学会年会プログラム・講演要旨集　19　752-752　1996/08/01
減数分裂期特異的recA様遺伝子に相同性を持つマウス及びヒト遺伝子の解析

佐藤修正, 浅水恵理香, 関直彦, 田畑哲之

日本分子生物学会年会プログラム・講演要旨集　19　770-770　1996/08/01
GENOME SEQUENCING PROJECT OF A CYANOBACTERIUM Synechocystis sp. strain PCC6803

KANEKO Takakazu, SATO Shusei, KOTANI Hirokazu, TANAKA Ayako, ASAMIZU Erika, MIYAJIMA Nobuyuki, HIROSAWA Makoto, SAZUKA Takashi, SUGIURA Masahiro, TABATA Satoshi

37　51-51　1996/03

ISSN： 0032-0781
Structure analysis and characteristics of all genomes of blue-green alga.

小谷博一, 金子貴一, 佐藤修正, 田中亜矢子, 浅水恵理香, 中村保一, 宮島伸行, 杉浦昌弘, 田畑哲之

日本農芸化学会関西支部講演会講演要旨集　395th　1996
Regulation of serine protease gene expression during the sexual differentiation induced by nitrogen starvation in S. pombe.

高瀬尚文, 永田晶子, 佐藤修正, 田畑哲之, 岩淵雅樹, 堀田康雄

日本分子生物学会年会プログラム・講演要旨集　17th　1994
Analysis of regulatory mechanism of expression of budding yeast serine protease genes induced by nitrogen starvation.

高瀬尚文, 永田晶子, 佐藤修正, 田畑哲之, 岩淵雅樹, 堀田康雄

日本細胞生物学会大会講演要旨集　47th　1994

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Research Projects 20

Elucidation of molecular mechanism of chiasma localization in bunching onion and its application to bulb onion breeding

Offer Organization: Japan Society for the Promotion of Science

System: Grants-in-Aid for Scientific Research

Category: Grant-in-Aid for Scientific Research (B)

Institution: Yamaguchi University

2024/04/01 - 2027/03/31
Multi-omics study for targeting genes related to heat tolerance and functionality in leaf bunching onion cultivar

Offer Organization: Japan Society for the Promotion of Science

System: Grants-in-Aid for Scientific Research

Category: Grant-in-Aid for Scientific Research (B)

Institution: Yamaguchi University

2021/04/01 - 2024/03/31
窒素固定共生のリコンストラクション

佐藤修正

Offer Organization: 科学技術振興機構

System: 戦略的な研究開発の推進未来社会創造事業探索加速型

Institution: 東北大学

2020 - 2024

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マメ科植物は窒素固定菌を細胞内に取り込むことにより大気中の窒素をアンモニアに変換し、窒素栄養として利用することができます。このような窒素固定共生を行う植物は、マメ科植物を含むマメ目のみならず、ブナ目、バラ目、ウリ目の植物にも存在しています。窒素固定クレードと呼ばれるこれらの植物群の分子系統解析から、約1億年前にこれらの共通祖先で窒素固定共生の能力が確立され、その後窒素固定クレードの植物の多くが遺伝子機能の欠失によりその能力を失ったことが示唆されています。このような背景を考慮し、本研究では、窒素固定クレードに属する植物を対象として、進化の過程で失われた共生関連遺伝子群を明らかにし、それらの遺伝子群を戻す “復元”(リコンストラクション)のアプローチで窒素固定共生の能力を非マメ科植物に付与する技術の開発を行います。この技術により、化学肥料の削減や貧栄養土壌での耕作安定化を通じて低炭素社会の実現に貢献することを目指します。
圃場におけるダイズ根粒菌集団管理法の開発

原新太郎, 佐藤修正

Offer Organization: 日本学術振興会

System: 科学研究費助成事業

Category: 基盤研究(C)

2020/04/01 - 2023/03/31

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前年度に引き続き、ダイズ根粒菌の系統解析を次世代シーケンサーで行うために必要なデータベースの整理を行った。すでに取得していた300以上のBradyrhizobiumのゲノムについて、全ての菌株が共通してもつシングルコピー遺伝子を抽出して解析を行うことで、昨年度までに行っていた全ゲノム比較よりも正確な系統樹を作成することができた。この系統樹に、窒素固定や根粒共生、硝化脱窒などの機能遺伝子の情報を付与して系統ごとの特徴を確認し、グループ分けを行った。続いて、10系統のダイズ品種を宮城県鹿島台圃場で栽培し、生育前半、開花期、子実肥大期の根粒を収穫し、rpoB遺伝子をターゲットとしたアンプリコン解析を行った。特定のダイズ品種（Peckingなど）は他とは明らかに異なる菌叢であることが明らかとなった。一方、ダイズ以外の緑肥植物を宮城県鹿島台圃場で栽培し、根に生息するBradyrhizobium属細菌の解析を行ったところ、植物種によってBradyrhizobiumが異なる傾向を見出した。BradyrhizobiumのrpoBのアンプリコン解析では、Bradyrhizobium以外のrpoB遺伝子の増幅など、ノイズを適切に取り除くことが重要なポイントとなる。効率的かつ再現度の高い解析を行うために、全てのBacteriaのrpoB遺伝子を網羅的に含むデータベースを作成し、Bradyrhizobium属細菌以外のrpoB遺伝子を取り除くパイプラインの作成に着手した。
Novel solar UVB adaptation strategic mechanism in plants, which have not function of CPD photoreactivation in chloroplast.

Offer Organization: Japan Society for the Promotion of Science

System: Grants-in-Aid for Scientific Research

Category: Grant-in-Aid for Scientific Research (B)

Institution: Tohoku University

2020/04/01 - 2023/03/31
細胞内共生成立後の宿主による根粒菌選別機構の解明と土壌根粒菌叢への影響の評価

佐藤修正

Offer Organization: 日本学術振興会

System: 科学研究費助成事業

Category: 基盤研究(B)

Institution: 東北大学

2020/04/01 - 2023/03/31

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宿主によるCheating根粒菌（感染能力を持つが窒素固定を行わない根粒菌）への制裁機能の欠失変異体（pink4変異体）を用いて、圃場から単離した感染表現型や窒素固定レベルの異なる4種類のCheating根粒菌株（w4、 S24、 S33、S35）を用いて、pink4変異体とその親株のMG-20系統にそれぞれ接種して形成された根粒組織からRNAを抽出しトランスクリプトーム解析を実施した。MG-20系統とpink4変異体との間で発現が変動した遺伝子に着目して接種菌株間での変動パターンを指標にクラスタリングを行なった結果、菌株の窒素固定能と相関して変動する遺伝子群に内膜系の形成やタンパク質分解に関与する遺伝子群が含まれることを見出した。 4種類のCheating根粒菌株のうち、窒素固定能低下・喪失の原因が不明であったS24株とS35株について、詳細な比較ゲノム解析を行なった結果、S24株の共生アイランドの配列は、ISで構成される可変領域を含めw4株の共生アイランドとほぼ同一の配列であり、圃場内で水平伝搬が生じたことが示唆された。同様にS35株の共生アイランドの配列は、S33株の共生アイランドとほぼ同一の配列であり、Mesorhizobium属のゲノムからAminobactor属のゲノムに属を超えた水平伝搬が生じたものと推定された。ミヤコグサ系統との組み合わせにより窒素固定活性が大きく変動することを見出した鳥取県で採取した根粒菌株（113株）と青森県で採取した根粒菌株（131株）を用いて、89系統のミヤコグサ野生系統に対する接種実験を行い、表現型情報の収集を行なった。得られた表現型のうち乾燥重量の菌株間の比を表現型値としてGWAS解析を行なった結果、5番染色体に有意なピークが認められ、根粒菌株との組み合わせによる窒素固定活性の制御に関与する遺伝子座を同定することができた。
Development of core collocation in garlic genetic resources through integrated omics analysis and its evaluation for functionality

SHIGYO MASAYOSHI

Offer Organization: Japan Society for the Promotion of Science

System: Grants-in-Aid for Scientific Research

Category: Grant-in-Aid for Scientific Research (B)

Institution: Yamaguchi University

2017/04/01 - 2020/03/31

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Our research via the use of unique genetic resources was carried out enable a holistic approach to profile the phytochemical composition as well as its related gene expression of alliums for functional material studies, through collaborative development of resources for metabolomics-high throughput chemical profiling by mass spectrometry, together with transcriptomics assay metadata by RNA-Seq. The metabolomics analysis of worldwide germplasm collection in garlic (Allium sativum L.) proved to be effective in evaluating its genetic diversity. Our main focus was to select useful food and/or medical materials amongst the mapping various genotypes and phenotypes. An omics approach could be utilized to characterize variation in these genetic stocks, developing capability and plant materials to support metabolomics-informed plant breeding studies.
Organelle damage and UVB resistance induced by differences in CPD photolyase organelle localization among plants

HIDEMA Jun

Offer Organization: Japan Society for the Promotion of Science

System: Grants-in-Aid for Scientific Research

Category: Grant-in-Aid for Scientific Research (B)

Institution: Tohoku University

2017/04/01 - 2020/03/31

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Cyclobutane pyrimidine dimer (CPD) photolyase, which repairs UVB-induced DNA damage, CPD, is essential for plants living in the sun. In the rice plant, rice CPD photolyase is expressed and targeted to not only the nucleus and the mitochondria but also the chloroplasts. This protein repairs UVB-induced CPDs in all three genomes. Therefore, rice CPD photolyase is a nuclear, mitochondrial and chloroplast triple-targeting protein. On the other hand, in some plants such as Arabidopsis thaliana, the transfer signal sequence for PHR to transfer to chloroplast is deleted, and it cannot be transferred to chloroplast. In such plants, autophagy, which removes damaged chloroplasts and mitochondria, is actively functioning, and Arabidopsis lacking autophagy shows UVB sensitivity. Therefore, autophagy plays an important role in UVB resistance.
Development of new genetic resources of rice against global climate change

Higashitani Atsushi, ODA Susumu, TOMODA Aya, HOSONUMA Nobutaka, SHAO Zhenhua, ZHANG Lin

Offer Organization: Japan Society for the Promotion of Science

System: Grants-in-Aid for Scientific Research

Category: Grant-in-Aid for Scientific Research (B)

Institution: Tohoku University

2015/04/01 - 2018/03/31

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We performed genome and post genome analyses using Oryza sativa japonica cv. "Sasanishiki" and "Hitomebore". The former is susceptible to cold injury and panicle blast disease, and the latter is tolerant to both injuries. We here found that qCT-7 involved in the tolerance to cold injury did not link to the tolerance against panicle blast disease. In addition, Through these studies, we aim to develop new genetic resources that contribute to the stable supply of rice under abnormal weather on a global scale.
Application of integrated omics analyses by using Allium bio-resources to onion breeding

Masayoshi Shigyo, HIRAKAWA Hideki, NAKABAYASHI Ryo

Offer Organization: Japan Society for the Promotion of Science

System: Grants-in-Aid for Scientific Research

Category: Grant-in-Aid for Scientific Research (B)

Institution: Yamaguchi University

2014/04/01 - 2017/03/31

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Our research via the use of unique genetic resources was carried out enable a holistic approach to profile the phytochemical composition as well as its related gene expression of alliums for plant breeding studies, through collaborative development of resources for metabolomics-high throughput chemical profiling by mass spectrometry, together with transcriptmics assay metadata by RNA-Seq. The metabolomics analysis of eight monosomic addition lines proved to be effective in revealing the effects of single alien chromosomes from shallot on the production of several functional chemical compounds in the different organs of A. fistulsoum. Our main focus was to map the resistance gene of shallot with SNP markers together with mQTLs by using the mapping population derived from F1 between shallot and onion DHs. An omics approach could be utilized to characterize variation in these genetic stocks, developing capability and plant materials to support metabolomics-informed plant breeding studies.
Mechanisms of symbiotic evolution and N2O mitigation of soybean bradyrhizobia

Minamisawa Kiwamu

Offer Organization: Japan Society for the Promotion of Science

System: Grants-in-Aid for Scientific Research

Category: Grant-in-Aid for Scientific Research (A)

Institution: Tohoku University

2014/04/01 - 2017/03/31

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Rj2 restricts nodulation by specific rhizobial strains including Bradyrhizobium diazoefficiens USDA122. We identified a T3SS effector gene that induces the incompatibility to Rj2-soybeans. These results suggested that hosts monitor the rhizobial T3SS effector during infection and reject nodulation via host R protein. B. diazoefficiens is able to scavenge the greenhouse gas N2O through the N2O reductase. Comparative analysis of Nos(++) mutant genomes showed that nasS mutation of resulted in Nos(++) phenotype. nasS mutation induced nosZ via NasT. NO3(-) addition dissociated the NasS-NasT complex in vitro, suggesting the release of the activator NasT. Disruption of nasT led to a marked decrease in nosZ transcription. Thus NasST regulates the NO3(-) -mediated response of nosZ gene. EMSA analysis suggested that nos expression is subjected to antitermination on both H1 and H2 hairpins upstream of nosR.
Analysis of genetic factors involved in interaction between rhizobium and host plant through type III secretion system

Sato Shusei, KANEKO TAKAKAZU

Offer Organization: Japan Society for the Promotion of Science

System: Grants-in-Aid for Scientific Research

Category: Grant-in-Aid for Challenging Exploratory Research

Institution: Tohoku University

2014/04/01 - 2016/03/31

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In an attempt to accumulate the information on the interaction between rhizobium and legume plants medicated by type III secretion system (T3SS) effectors, we conducted molecular genetic analyses using a model legume Lotus japonicus and Bradyrhizobium elkanii. As the results of infection analysis and Tn5 mutant screening, we identified that two types of immune responses, block of infection and prevention of nodule maturation, induced by different effectors. Based on the QTL analysis using RILs and GWAS using wild accessions of L. japonicus, we detected multiple candidate loci related to the responses caused by T3SS effectors.
Genomic information of an endophyte of Lotus japonicus to facilitate investigation on the symbiosis

KANEKO Takakazu, SATO Shusei, HIRAKAWA Hideki

Offer Organization: Japan Society for the Promotion of Science

System: Grants-in-Aid for Scientific Research

Category: Grant-in-Aid for Scientific Research (C)

Institution: Kyoto Sangyo University

2013/04/01 - 2016/03/31

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The complete nucleotide sequence of the genome of a Lotus japonicus endophyte was determined. For sequencing, a cosmid genomic library was constructed, and the library is available as a tool for post genomics. The 2974 clones, all of which have been mapped on the genome, contain inserts of approximately 28 kb. The genome of the endophyte consists of a chromosome (4779007 bp) and two plasmids (2509446 bp and 614482 bp). The genome comprises 7703 protein-encoding genes, three copies of rRNA gene clusters and 54 tRNA genes. Fourty-two percent of the protein-encoding sequences shown sequence similarity to genes of known function were classified into SEED subsystems. Compared with other Rhizobium species, no gene for either nitrogen fixation nor nodulation was notable characteristics of this endophyte. Three gene clusters related to the protein secretion classified into T3SS or T4SS were identified. These may be involved in the plant-microbe interactions.
Molecular mechanism of floral diversification in orchids

KANNO AKIRA, MII MASAHIRO, HANDA TAKASHI, YUKAWA TOMOHISA, SATO SYUSEI

Offer Organization: Japan Society for the Promotion of Science

System: Grants-in-Aid for Scientific Research

Category: Grant-in-Aid for Scientific Research (B)

Institution: Tohoku University

2013/04/01 - 2016/03/31

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In order to understand the molecular mechanism of the orchid-specific floral organs such as lip, column, pollinium, we established the cultivation system and Agrobacterium-mediated transformation system in Psygmorchis pusilla. We also analyzed the optimal condition for mutant generation with ion beam and EMS. cDNA fragments related to floral development were isolated from Psygmorchis pusilla and Habenaria radiata.
Deduction of minimum sysmbiosis island gene sets for Lotus rhizobia

SAEKI Kazuhiko, SATO Shusei

Offer Organization: Japan Society for the Promotion of Science

System: Grants-in-Aid for Scientific Research

Category: Grant-in-Aid for Scientific Research (C)

Institution: Nara Women's University

2011 - 2013

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In an attempt to deduce the rhizobial minimum symbiosis gene sets for mutualism between Mesorhizobium loti and Lotus species, we compared nucleotide sequences of symbiosis islands of three M. loti strains and found 155 genes are completely conserved among them. We made controllable promoters and new selectable markers to be used with M. loti strains. We also made a temperature sensitive derivative of the broad-host range vector pBBR1MCS2, by mutagenesis of its rep gene. In addition, we performed Next Generation Sequencing analysis of several M. loti strains and mapped the obtained reads on the genome sequence of the strain MAFF303099. The results supported the divergence of main chromosomes among M. loti strains with conserved core structure of symbiosis island.
Comparative genomics of Bradyrhizobia toward uncovering relationshipbetween the genetic elements and the biological effects in soybean symbiosis

KANEKO Takakazu, SATO Shusei, MINAMISAWA Kiwamu

Offer Organization: Japan Society for the Promotion of Science

System: Grants-in-Aid for Scientific Research

Category: Grant-in-Aid for Scientific Research (B)

Institution: Kyoto Sangyo University

2009 - 2012

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The nucleotide sequences of the genomes of four Bradyrhizobial strains were determined.Comparison of their genome structures, especially constitution of the genomic islands,was explored based on the genomic information. A significantly high level of sequenceconservation was detected in symbiosis islands on USDA110 and USDA6 genomes. Diversityof the symbiosis islands of B.japonicum and B.elkanii represented some differentsymbiotic aspects between them.
ミヤコグサとのシンテニーを利用したダイズのゲノム構造の解析

原田久也, 佐藤修正, 近江戸伸子

Offer Organization: 日本学術振興会

System: 科学研究費助成事業

Category: 特定領域研究

Institution: 独立行政法人農業生物資源研究所

2008 - 2009

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1. ミスズダイズと秣食豆公503に由来するRILの連鎖地図を基準にして、ミヤコグサの塩基配列情報を利用して比較地図を作製した。F2連鎖地図を用いた結果と同様にダイズの染色体はミヤコグサ連鎖ブロックのモザイクとなっていた。相同染色体は1対ずつで、染色体レベルでは2倍体である。 2. Williams82のゲノム塩基配列から同祖領域を探索したところ、領域の大きさは最大約12.4MBにわたっていることがわかった。同祖領域の分布は極めて複雑でダイズゲノムは複数の倍加と再編成を経て形成されたと考えられる 3. ミヤコグサの花の対称性に関わる遺伝子cyc3のオーソログGmcyc3aを含むBACクローンとGmcyc3aの同祖遺伝子Gmcyc3bを含むBACクローンを異なる蛍光色素でラベルしてパキテン期染色体に同時に貼り付けるとそれぞれ同じ領域にシグナルが観察され、一方のシグナルが強いところは他方のシグナルが弱く見かけ上2つのシグナルがはっきりと認められた。同じことが、同祖遺伝子NFR1a、NFR1bなどでも観察された。また開花期関連遺伝子FT3を含むダイズのTACクローンと相同なミヤコグサのTACクローンは同じ位置にシグナルが見られ強弱が逆転していた。一般にミヤコグサのTACクローンはダイズのBACクローンに比較してシグナルが弱かった。 4. ダイズのゲノムはマメ科植物の中で、極めて特異的であることがわかった。マクロシンテニー、マイクロシンテニーの解析から、倍加と再編成の結果、現在のゲノム構造が生じたと考えられる。ホモロジーの極めて高い同祖遺伝子は、一般に2つ存在していてそれは最も新しい時期の倍加による結果だと考えられる。それらの遺伝子間では機能の分業が生じていて、ダイズは遺伝子レベルでも2倍体としてのシステムを獲得していると言える。
Construction of physical maps and sequence analyses for the regions covering the important trait loci in soybean

HARADA Kyuya, SATO Shusei

Offer Organization: Japan Society for the Promotion of Science

System: Grants-in-Aid for Scientific Research

Category: Grant-in-Aid for Scientific Research (A)

2006 - 2009

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The purpose of this study is annotation of the genes located in the important trait loci in soybean. The genes were predicted in the regions including autoregulation gene Nts1 and it's homoeologs GmCLV1A ; ortholog of Nod factor receptor gene GmNFR1, flowering time-related loci, FT1, FT2 and FT3 ; homologs of flowering control gene FT, GmFTs ; homologs of phytochrome A gene, GmphyA1 and GmphyA2 ; the locus for 7S globulin-deficiency, Scg-1. The responsible genes for FT1, FT2, FT3, Scg1 and Dt1 loci were identified.
ミヤコグサとのシンテニーを利用したダイズのゲノム構造の解析

原田久也, 佐藤修正

Offer Organization: 日本学術振興会

System: 科学研究費助成事業

Category: 特定領域研究

2006 - 2007

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ダイズでは、共生関連遺伝子3、完全長cDNA53、窒素代謝関連酵素遺伝子14、種子特異的転写制御因子ホモログ6の位置情報が新たに得られた。これらのマーカーをミスズダイズと秣食豆公503を両親とするF_2連鎖地図上(マーカー数1277)に統合してシンテニー解析に用いた。主にダイズ連鎖地図上のマーカーに対するミヤコグサオルソログの位置を同定することにより、301の共通マーカーの位置を決定した。比較的長いシンテニーブロックが連鎖群1とL、3とH、4とA1の間に見られたが一般的にはダイズの染色体はシンテニーを示すミヤコグサのゲノム断片のモザイクとなっていた。ダイズの連鎖群A1とA2、A1とK、A2とG、A2とL、A2とM、B1とB2、B2とC1、B2とDlb、C1とC2、DlaとDlb、GとM、IとL、IとN、NとO、LとG、LとI、LとN、NとIの間に重複している領域が存在すること、パラログがゲノム中に散在していることがわかった。Nodファクター受容体遺伝子GmNFRla、GmNFRlbおよび開花期関連遺伝子FT2a、FT2bを含むBACコンティグの塩基配列を決定して各遺伝子の近傍の配列とミヤコグサのオルソログ周辺の配列を比較したところダイズパラログ近傍とミヤコグサオルソログ近傍で同時に高いマイクロシンテニーがあることが明らかになった。遺伝子のコード領域のアミノ酸配列レベルではダイズパラログ間で85-100%,ダイズとミヤコグサ間で75-90%の相同性があった。この結果からダイズの倍数化は比較的新しいものが含まれていることが示唆された。
ミヤコグサを基準としたダイズのゲノム特性の解明

原田久也, 篠崎一雄, 梅澤泰史, 佐藤修正

Offer Organization: 日本学術振興会

System: 科学研究費助成事業

Category: 特定領域研究

Institution: 千葉大学

2005 - 2005

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ダイズの完全長cDNAライブラリーの19,436クローンについて末端領域塩基配列を決定した。品質の低い配列を削除して、19,103(両端15,019、片端4,084)が解析の対象になった。スプライスバリアントを独立と見なすと独立クローンの数は10,261となり、重複率は46.3%であった。独立クローンについてアノテーションを行なった。ライブラリーの品質が高いことが判明したので、クローンの充実には既存のライブラリーからさらにクローンをピックアップすることで十分に達成できると判断し、新たに2万クローンを単離して末端領域塩基配列を決定した。完全長cDNAクローンの両端塩基配列から設計したプライマーによるPCR産物を制限酵素の組み合わせApaI/RsaI、AluI/HaeIIIで処理後SSCP法で多型解析を行なうため、処理条件、泳動条件を検討した。その結果PCR産物は変性溶液に溶解後、95℃、5分加熱後直ちに氷上に保存すること、多型解析は非変性不連続電気泳動法により、4℃で、200V、7時間行なうことによりよい結果が得られることがわかった。この手法をCAS-SSCP(cleaved amplified sequence-single strand conformation polymorphism)法と名づけた。完全長cDNAの塩基配列から設計したプライマーで増幅産物が得られたもののうち、CAS-SSCP法で約40%が両親間で多型を示した。現在までにマッピング可能な48のマーカーが得られた。ダイズの組換え近交系を用いて、23クローンのマッピングが終了した。またミヤコグサの根粒で強く発現しているcDNAクローン19をRFLP法により同じ組換え近交系を用いてマッピングした。ミヤコグサのオルソログを同定して、今までのマーカーを含めて全体で261の共通マーカーの位置を決定することが出来た。これらのマーカーに基づきミヤコグサを中心にダイズとの比較地図を作製した。今までのシンテニーブロックが伸びたり、新たなブロックが加わった領域があり、比較地図を充実することが出来た。

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