Details of the Researcher

PHOTO

Satoshi Murata
Section
Graduate School of Engineering
Job title
Professor
Degree
  • 博士(工学)(名古屋大学)

  • 工学修士(名古屋大学)

Profile
1985年 名古屋大学工学部航空学科卒業
1987年 名古屋大学大学院工学研究科博士前期課程航空工学専攻修了
1987年 通商産業省工業技術院機械技術研究所研究員
1994年 同 主任研究官
1998年 米国Johns Hopkins大学機械工学科客員研究員
2001年 東京工業大学大学院総合理工学研究科知能システム科学専攻助教授
2010年 東北大学大学院工学研究科バイオロボティクス専攻教授

Committee Memberships 41

  • BIOMOD Foundation Board member

    2016/11 - Present

  • New Generation Computing Area Editor

    2016/10 - Present

  • 計測自動制御学会 論文集編集委員会 委員

    2011/04 - Present

  • 計測自動制御学会 論文集編集委員会 委員

    2011/04 - Present

  • 計測自動制御学会 調査研究会 分子ロボティクス研究会 主査

    2010/03 - Present

  • 計測自動制御学会 調査研究会 分子ロボティクス研究会 主査

    2010/03 - Present

  • DNA Computing Steering Committee member

    2009/06 - Present

  • 計測自動制御学会 システム情報部門 運営委員

    2009/04 - Present

  • 計測自動制御学会 システム情報部門 運営委員

    2009/04 - Present

  • 日本機械学会 校閲委員

    2005/04 - Present

  • DNA Computing Steering Committee

    2005/04 - Present

  • 形の科学会 運営委員

    2005/04 - Present

  • DNA Computing Program Committee

    2005/04 - Present

  • 日本機械学会 校閲委員

    2005/04 - Present

  • DNA Computing Steering Committee

    2005/04 - Present

  • 形の科学会 運営委員

    2005/04 - Present

  • DNA Computing Program Committee

    2005/04 - Present

  • DNA20 Program committee Program Committee Chair

    2013/09 - 2014/09

  • DNA20 Program committee Program Committee Chair

    2013/09 - 2014/09

  • 科学技術振興機構研究開発戦略センター 科学技術未来戦略ワークショップ 細胞ICT 専門委員

    2011/11 - 2012/03

  • 科学技術振興機構研究開発戦略センター 科学技術未来戦略ワークショップ 細胞ICT 専門委員

    2011/11 - 2012/03

  • 日本ロボット学会 論文査読小委員会委員

    2009/04 - 2012/03

  • 日本ロボット学会 論文査読小委員会委員

    2009/04 - 2012/03

  • 計測自動制御学会 システム情報部門 SSI2011プログラム委員

    2011/07 - 2011/11

  • 計測自動制御学会 システム情報部門 SSI2011プログラム委員

    2011/07 - 2011/11

  • 日本ロボット学会 評議委員、論文賞委員

    2007/04 - 2011/03

  • 日本ロボット学会 評議委員、論文賞委員

    2007/04 - 2011/03

  • 計測自動制御学会 システム情報部門学術講演会 実行委員長

    2009/04 - 2010/03

  • 日本ロボット学会 会誌編集委員

    2009/04 - 2010/03

  • 計測自動制御学会 システム情報部門学術講演会 実行委員長

    2009/04 - 2010/03

  • 日本ロボット学会 会誌編集委員

    2009/04 - 2010/03

  • 計測自動制御学会 自律分散部会 委員

    2008/04 - 2009/03

  • DARS2008 Program Committee

    2008/04 - 2009/03

  • 計測自動制御学会 自律分散部会 委員

    2008/04 - 2009/03

  • DARS2008 Program Committee

    2008/04 - 2009/03

  • DARS2006 Program Committee

    2006/04 - 2007/03

  • DARS2006 Program Committee

    2006/04 - 2007/03

  • 計測自動制御学会 自律分散部会 運営委員(幹事)

    2005/04 - 2006/03

  • 計測自動制御学会 自律分散部会 運営委員(幹事)

    2005/04 - 2006/03

  • DARS2004 Program Committee

    2004/04 - 2005/03

  • DARS2004 Program Committee

    2004/04 - 2005/03

Show all ︎Show first 5

Professional Memberships 6

  • 日本生物物理学会

  • SSFJ

  • JSME

  • ISNSCE

  • RSJ

  • SICE

︎Show all ︎Show first 5

Research Interests 4

  • Emergent System

  • Distributed Autonomous System

  • DNA nanoengineering

  • molecular robotics

Research Areas 3

  • Informatics / Intelligent robotics /

  • Informatics / Perceptual information processing /

  • Informatics / Biological, health, and medical informatics /

Awards 11

  1. Best Poster Award, DNA Computing and Moleuclar Programming DNA21

    2015/08/21 ISNSCE Molecular information processing in micro gel beads with entrapped DNAs

  2. Excellent Poster Award, CBI Annual Conference 2014

    2014/11/30 CBI Single-molecular Activity Measurement of Enzymes Attached to DNA origami

  3. グットデザイン賞、M-TRAN IIIの開発(チーフデザイナー)

    2007/04 経済産業省

  4. Best Paper Award

    2006/04 Distributed Autonomous Robotic systems

  5. ロボティクス・メカトロニクス部門 ROBOMEC表彰

    2004/04 日本機械学会

  6. Best Paper Award

    2002/04 Distributed Autonomous Robotic systems

  7. 注目発明選定

    1999/04 特許庁

  8. Best Paper Award

    1998/04 Distributed Autonomous Robotic systems

  9. 機械技術研究所研究業績賞

    1997/04 機械技術研究所

  10. 計測自動制御学会論文賞

    1996/04 計測自動制御学会

  11. IEEE Trans. Industrial Electronics Outstanding Transaction Paper Award

    1992/04 IEEE Industrial Electronics Society

Show all ︎Show 5

Papers 205

  1. Intra- and Interbead Communications by an Anchored DNA Structure and Cascaded DNA Reactions

    Ibuki Kawamata, Satoru Yoshizawa, Keita Abe, Masahiro Takinoue, Shin-Ichiro M. Nomura, Satoshi Murata

    ACS Synthetic Biology 2025/03/14

    Publisher: American Chemical Society (ACS)

    DOI: 10.1021/acssynbio.4c00709  

    ISSN: 2161-5063

    eISSN: 2161-5063

  2. Programming Pattern Formation by DNA Reaction-diffusion System with Designed Base Sequences

    Keita ABE, Satoshi MURATA, Ibuki KAWAMATA

    Seibutsu Butsuri 65 (1) 14-16 2025

    Publisher: Biophysical Society of Japan

    DOI: 10.2142/biophys.65.14  

    ISSN: 0582-4052

    eISSN: 1347-4219

  3. Transmembrane DNA Sequence Signaling via Hybridization

    Kai Yoshida, Keita Abe, Yusuke Sato, Ibuki Kawamata, Richard James Archer, Hideaki T. Matsubayashi, Shogo Hamada, Satoshi Murata, Shin-ichiro Nomura

    2024/07/16

    DOI: 10.26434/chemrxiv-2024-571kp  

  4. Autonomous assembly and disassembly of gliding molecular robots regulated by a DNA-based molecular controller

    Ibuki Kawamata, Kohei Nishiyama, Daiki Matsumoto, Shosei Ichiseki, Jakia J. Keya, Kohei Okuyama, Masatoshi Ichikawa, Arif Md. Rashedul Kabir, Yusuke Sato, Daisuke Inoue, Satoshi Murata, Kazuki Sada, Akira Kakugo, Shin-ichiro M. Nomura

    Science Advances 10 (22) 2024/05/31

    Publisher: American Association for the Advancement of Science (AAAS)

    DOI: 10.1126/sciadv.adn4490  

    eISSN: 2375-2548

    More details Close

    In recent years, there has been a growing interest in engineering dynamic and autonomous systems with robotic functionalities using biomolecules. Specifically, the ability of molecular motors to convert chemical energy to mechanical forces and the programmability of DNA are regarded as promising components for these systems. However, current systems rely on the manual addition of external stimuli, limiting the potential for autonomous molecular systems. Here, we show that DNA-based cascade reactions can act as a molecular controller that drives the autonomous assembly and disassembly of DNA-functionalized microtubules propelled by kinesins. The DNA controller is designed to produce two different DNA strands that program the interaction between the microtubules. The gliding microtubules integrated with the controller autonomously assemble to bundle-like structures and disassemble into discrete filaments without external stimuli, which is observable by fluorescence microscopy. We believe this approach to be a starting point toward more autonomous behavior of motor protein–based multicomponent systems with robotic functionalities.

  5. Liquid DNA Coacervates form Porous Capsular Hydrogels via Viscoelastic Phase Separation on Microdroplet Interface

    Masamune Morita, Tetsuro Sakamoto, Shin‐ichiro M. Nomura, Satoshi Murata, Miho Yanagisawa, Masahiro Takinoue

    Advanced Materials Interfaces 2024/05

    DOI: 10.1002/admi.202300898  

  6. Multi-Reconfigurable DNA Origami Nanolattice Driven by the Combination of Orthogonal Signals

    Kotaro Watanabe, Ibuki Kawamata, Satoshi Murata, Yuki Suzuki

    JACS Au 3 (5) 1435-1442 2023/04/27

    Publisher: American Chemical Society (ACS)

    DOI: 10.1021/jacsau.3c00091  

    ISSN: 2691-3704

    eISSN: 2691-3704

  7. [Review] From Molecular Robotics to Molecular Cybernetics: The First Step Toward Chemical Artificial Intelligence Invited

    Akinori Kuzuya, Shin-Ichiro M. Nomura, Taro Toyota, Takashi Nakakuki, Satoshi Murata

    IEEE Transactions on Molecular, Biological, and Multi-Scale Communications 2023

    DOI: 10.1109/TMBMC.2023.3304243  

  8. Self-replication and Mutation of Polymeric Molecules Simulated by Simplified Chemistry

    Taisei Mori, Ibuki Kawamata, Satoshi Murata

    2022 Tenth International Symposium on Computing and Networking Workshops (CANDARW) 2022/11

    Publisher: IEEE

    DOI: 10.1109/candarw57323.2022.00083  

  9. Autonomous and Programmable Strand Generator Implemented as DNA and Enzymatic Chemical Reaction Cascade

    Ibuki Kawamata, Shin-ichiro M. Nomura, Satoshi Murata

    New Generation Computing 40 (2) 723-736 2022/02/27

    Publisher: Springer Science and Business Media LLC

    DOI: 10.1007/s00354-022-00156-4  

    ISSN: 0288-3635

    eISSN: 1882-7055

  10. Web Server with a Simple Interface for Coarse-grained Molecular Dynamics of DNA Nanostructures

    Yudai Yamashita, Kotaro Watanabe, Satoshi Murata, Ibuki Kawamata

    Chem-Bio Informatics Journal 21 28-38 2021/04/30

    Publisher: Chem-Bio Informatics Society

    DOI: 10.1273/cbij.21.28  

    ISSN: 1347-6297

    eISSN: 1347-0442

  11. Online Biomolecular Design Competition Across University Boundaries

    Satoshi MURATA, Akinori KUZUYA, Kei FUJIWARA, Junichi TAIRA, Ibuki KAWAMATA, Yusuke SATO, Masahiro TAKINOUE, Shin-ichiro M. NOMURA, Akira KAKUGO, Yutaka HORI, Keita ABE

    Journal of JSEE 69 (4) 4_31-4_39 2021

    Publisher: Japanese Society for Engineering Education

    DOI: 10.4307/jsee.69.4_31  

    ISSN: 1341-2167

    eISSN: 1881-0764

  12. Cascaded pattern formation in hydrogel medium using the polymerisation approach

    Keita Abe, Satoshi Murata, Ibuki Kawamata

    Soft Matter 17 (25) 6160-6167 2021

    Publisher: Royal Society of Chemistry (RSC)

    DOI: 10.1039/d1sm00296a  

    ISSN: 1744-683X

    eISSN: 1744-6848

    More details Close

    <p>A novel reaction-diffusion system utilizing two-segment DNA polymerisation is proposed. Produced pattern is immobilised in a hydrogel medium, which enables cascaded reaction for further pattern formation.</p>

  13. A large, square-shaped, DNA origami nanopore with sealing function on a giant vesicle membrane

    Shoji Iwabuchi, Ibuki Kawamata, Satoshi Murata, Shin-ichiro M. Nomura

    Chemical Communications 57 (24) 2990-2993 2021

    Publisher: Royal Society of Chemistry (RSC)

    DOI: 10.1039/d0cc07412h  

    ISSN: 1359-7345

    eISSN: 1364-548X

    More details Close

    <p>DNA origami nanopore with large size of a 10 nm square, equipping a tunable lid, enables size-selective molecular transportation through the lipid membrane of giant vesicle.</p>

  14. DNA Ring Motif with Flexible Joints Peer-reviewed

    Shiyun Liu, Satoshi Murata, Ibuki Kawamata

    Micromachines 11 (11) 987-987 2020/10/31

    Publisher: MDPI AG

    DOI: 10.3390/mi11110987  

    eISSN: 2072-666X

    More details Close

    The invention of DNA origami has expanded the geometric complexity and functionality of DNA nanostructures. Using DNA origami technology, we develop a flexible multi-joint ring motif as a novel self-assembling module. The motif can connect with each other through self-complementary sequences on its segments. The flexible joints can be fixed in a straightened position as desired, thereby allowing the motif to take various shapes. We can adjust the number of flexible joints and the number of connectable segments, thereby enabling programmable self-assembly of the motif. We successfully produced the motif and evaluated several self-assembly patterns. The proposed multi-joint ring motif can provide a novel method for creating functional molecular devices.

  15. Programming Methods for DNA-Based Reaction–Diffusion Systems

    Keita Abe, Satoshi Murata

    New Generation Computing 38 (2) 379-393 2020/05/01

    Publisher: Springer Tokyo

    DOI: 10.1007/s00354-020-00094-z  

    ISSN: 1882-7055 0288-3635

  16. Formation of DNA micro-skeleton structures in water-in-oil microdroplets

    Masamune Morita, Shin-Ichiro M. Nomura, Satoshi Murata, Miho Yanagisawa, Masahiro Takinoue

    21st International Conference on Miniaturized Systems for Chemistry and Life Sciences, MicroTAS 2017 159-160 2020

    Publisher: Chemical and Biological Microsystems Society

  17. Design Automation of Polyomino Set That Self-Assembles into a Desired Shape International-journal Peer-reviewed

    Matsumura, Yuta, Kawamata, Ibuki, Murata, Satoshi

    26th International Conference on DNA Computing and Molecular Programming (DNA 26) 174 8:1-8:15 2020

    Publisher: Schloss Dagstuhl--Leibniz-Zentrum fur Informatik

    DOI: 10.4230/LIPIcs.DNA.2020.8  

    More details Close

    The problem of finding the smallest DNA tile set that self-assembles into a desired pattern or shape is a research focus that has been investigated by many researchers. In this paper, we take a polyomino, which is a non-square element composed of several connected square units, as an element of assembly and consider the design problem of the minimal set of polyominoes that self-assembles into a desired shape. We developed a self-assembly simulator of polyominoes based on the agent-based Monte Carlo method, in which the potential energy among the polyominoes is evaluated and the simulation state is updated toward the direction to decrease the total potential. Aggregated polyominoes are represented as an agent, which can move, merge, and split during the simulation. In order to search the minimal set of polyominoes, two-step evaluation strategy is adopted, because of enormous search space including many parameters such as the shape, the size, and the glue types attached to the polyominoes. The feasibility of the proposed method is shown through three examples with different size and complexity.

  18. Large deformation of a DNA origami nanoarm through the cumulative actuation of tension-adjustable modules. Peer-reviewed

    Suzuki Y, Kawamata I, Mizuno K, Murata S

    Angewandte Chemie (International ed. in English) 2020/01

    DOI: 10.1002/anie.201916233  

    ISSN: 1433-7851

  19. DNA Origami “Quick” Refolding Inside of a Micron-Sized Compartment Peer-reviewed

    Taiki Watanabe, Yusuke Sato, Hayato Otaka, Ibuki Kawamata, Satoshi Murata, Shin-Ichiro M. Nomura

    Molecules 1 (25) 8 2020

    DOI: 10.3390/molecules25010008  

  20. Pattern Formation on Discrete Gel Matrix Based on DNA Computing Peer-reviewed

    Hosoya Takuto, Kawamata Ibuki, Nomura Shin-ichiro M, Murata Satoshi

    NEW GENERATION COMPUTING 37 (1) 97-111 2019/01

    DOI: 10.1007/s00354-018-0047-1  

    ISSN: 0288-3635

  21. Isothermal amplification of specific DNA molecules inside giant unilamellar vesicles Peer-reviewed

    Yusuke Sato, Ken Komiya, Ibuki Kawamata, Satoshi Murata, Shin-ichiro M. Nomura

    Chemical Communications 55 (62) 9084-9087 2019

    DOI: 10.1039/C9CC03277K  

  22. Environment-Dependent Self-Assembly of DNA Origami Lattices on Phase-Separated Lipid Membranes Peer-reviewed

    Yusuke Sato, Masayuki Endo, Masamune Morita, Masahiro Takinoue, Hiroshi Sugiyama, Satoshi Murata, Shin-ichiro M. Nomura, Yuki Suzuki

    Advanced Materials Interfaces 5 (14) 1800437-1800437 2018/07

    Publisher: Wiley

    DOI: 10.1002/admi.201800437  

    ISSN: 2196-7350

  23. Diffusion modulation of DNA by toehold exchange Peer-reviewed

    Thanapop Rodjanapanyakul, Fumi Takabatake, Keita Abe, Ibuki Kawamata, Shinichiro M. Nomura, Satoshi Murata

    Physical Review E (97) 2018/05

  24. Construction of T-Motif-Based DNA Nanostructures through Enzymatic Reactions. International-journal Peer-reviewed

    Ryo Kageyama, Ibuki Kawamata, Kaori Tanabe, Yuki Suzuki, Shin-Ichiro M Nomura, Satoshi Murata

    Chembiochem : a European journal of chemical biology 19 (8) 873-876 2018/04/16

    DOI: 10.1002/cbic.201700682  

    More details Close

    The most common way to fabricate DNA nanostructures is to mix individually synthesized DNA oligomers in one pot. However, if DNA nanostructures could be produced through enzymatic reactions, they could be applied in various environments, including in vivo. Herein, an enzymatic method developed to construct a DNA nanostructure from a simple motif called a T-motif is reported. A long, repeated structure was replicated from a circular template by rolling circle amplification and then cleaved into T-motif segments by restriction enzymes. These motifs have been successfully assembled into a ladder-like nanostructure without purification or controlled annealing. This approach is widely applicable to constructing a variety of DNA nanostructures through enzymatic reactions.

  25. Non natural tiny-wet machine: Molecular robot Peer-reviewed

    Sato Yusuke, Hiratsuka Yuichi, Kawamata Ibuki, Murata Satoshi, Nomura M. Shin-ichiro

    2017 International Symposium on Micro-NanoMechatronics and Human Science (MHS) 2017/12

    DOI: 10.1109/MHS.2017.8305293  

  26. Revolving Vernier Mechanism Controls Size of Linear Homomultimer Peer-reviewed

    Takeo Uchida, Keita Abe, Yuma Endo, Shosei Ichiseki, Satoru Akita, Shiyun Liu, Sho Aradachi, Masataka Saito, Akihiko Fukuchi, Taiyo Kikkawa, Theo Dammaretz, Ibuki Kawamata, Yuki Suzuki, Shin-ichiro M. Nomura, Satoshi Murata

    SMALL 13 (41) 2017/11

    DOI: 10.1002/smll.201702158  

    ISSN: 1613-6810

    eISSN: 1613-6829

  27. Discretization of Chemical Reactions in a Periodic Cellular Space Peer-reviewed

    Fumi Takabatake, Ibuki Kawamata, Ken Sugawara, Satoshi Murata

    NEW GENERATION COMPUTING 35 (3) 213-223 2017/07

    DOI: 10.1007/s00354-017-0009-z  

    ISSN: 0288-3635

    eISSN: 1882-7055

  28. Stepping operation of a rotary DNA origami device Peer-reviewed

    Takahiro Tomaru, Yuki Suzuki, Ibuki Kawamata, Shin-ichiro M. Nomura, Satoshi Murata

    CHEMICAL COMMUNICATIONS 53 (55) 7716-7719 2017/07

    DOI: 10.1039/c7cc03214e  

    ISSN: 1359-7345

    eISSN: 1364-548X

  29. DNA cytoskeleton for stabilizing artificial cells Peer-reviewed

    Chikako Kurokawa, Kei Fujiwara, Masamune Morita, Ibuki Kawamata, Yui Kawagishi, Atsushi Sakai, Yoshihiro Murayama, Shin-ichiro M. Nomura, Satoshi Murata, Masahiro Takinoue, Miho Yanagisawa

    PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 114 (28) 7228-7233 2017/07

    DOI: 10.1073/pnas.1702208114  

    ISSN: 0027-8424

  30. Unzipping and shearing DNA with electrophoresed nanoparticles in hydrogels Peer-reviewed

    Keitel Cervantes-Salguero, Ibuki Kawamata, Shin-ichiro M. Nomura, Satoshi Murata

    PHYSICAL CHEMISTRY CHEMICAL PHYSICS 19 (21) 13414-13418 2017/06

    DOI: 10.1039/c7cp02214j  

    ISSN: 1463-9076

    eISSN: 1463-9084

  31. Micrometer-sized molecular robot changes its shape in response to signal molecules Peer-reviewed

    Yusuke Sato, Yuichi Hiratsuka, Ibuki Kawamata, Satoshi Murata, Shin-ichiro M. Nomura

    SCIENCE ROBOTICS 2 (4) 2017/03

    DOI: 10.1126/scirobotics.aal3735  

    ISSN: 2470-9476

  32. How to Develop Students’ Creativity? ~A Case of Student Competition of Biomolecular Design Invited Peer-reviewed

    Satoshi Murata, Ibuki Kawamata, Shin-ichiro M. Nomura

    Proceeding of IEEE-ICCSE2016 13-20 2016/08

  33. Reversible Gel-Sol Transition of a Photo-Responsive DNA Gel Peer-reviewed

    Daisuke Kandatsu, Keitel Cervantes-Salguero, Ibuki Kawamata, Shogo Hamada, Shin-ichiro M. Nomura, Kenzo Fujimoto, Satoshi Murata

    CHEMBIOCHEM 17 (12) 1118-1121 2016/06

    DOI: 10.1002/cbic.201600088  

    ISSN: 1439-4227

    eISSN: 1439-7633

  34. Supramolecular 1-D polymerization of DNA origami through a dynamic process at the 2-dimensionally confined air-water interface Peer-reviewed

    Yusuke Yonamine, Keitel Cervantes-Salguero, Kosuke Minami, Ibuki Kawamata, Waka Nakanishi, Jonathan P. Hill, Satoshi Murata, Katsuhiko Ariga

    PHYSICAL CHEMISTRY CHEMICAL PHYSICS 18 (18) 12576-12581 2016/05

    DOI: 10.1039/c6cp01586g  

    ISSN: 1463-9076

    eISSN: 1463-9084

  35. 22aBW-6 Micro-emulsions with cytoskeleton structure of self-assembled DNA microgels

    Kurokawa C., Fujiwara K., Morita M., Murata S., Takinoue M., Yanagisawa M.

    Meeting Abstracts of the Physical Society of Japan 71 3266-3266 2016

    Publisher: The Physical Society of Japan (JPS)

    DOI: 10.11316/jpsgaiyo.71.1.0_3266  

    ISSN: 2189-079X

  36. Universal Totalistic Asynchonous Cellular Automaton and Its Possible Implementation by DNA Peer-reviewed

    Teijiro Isokawa, Ferdinand Peper, Ibuki Kawamata, Nobuyuki Matsui, Satoshi Murata, Masami Hagiya

    UNCONVENTIONAL COMPUTATION AND NATURAL COMPUTATION, UCNC 2016 9726 182-195 2016

    DOI: 10.1007/978-3-319-41312-9_15  

    ISSN: 0302-9743

  37. Discrete DNA Reaction-Diffusion Model for Implementing Simple Cellular Automaton Peer-reviewed

    Ibuki Kawamata, Satoru Yoshizawa, Fumi Takabatake, Ken Sugawara, Satoshi Murata

    UNCONVENTIONAL COMPUTATION AND NATURAL COMPUTATION, UCNC 2016 9726 168-181 2016

    DOI: 10.1007/978-3-319-41312-9_14  

    ISSN: 0302-9743

  38. Pattern Formation and Computation by Autonomous Chemical Reaction Diffusion Model Inspired by Cellular Automata Peer-reviewed

    Ibuki Kawamata, Takuto Hosoya, Fumi Takabatake, Ken Sugawara, Shin-ichiro M. Nomura, Teijiro Isokawa, Ferdinand Peper, Masami Hagiya, Satoshi Murata

    2016 FOURTH INTERNATIONAL SYMPOSIUM ON COMPUTING AND NETWORKING (CANDAR) 215-221 2016

    DOI: 10.1109/CANDAR.2016.55  

    ISSN: 2379-1888

  39. In situ 2D-extraction of DNA wheels by 3D through-solution transport. Peer-reviewed

    Yonamine Y, Cervantes-Salguero K, Nakanishi W, Kawamata I, Minami K, Komatsu H, Murata S, Hill JP, Ariga K

    Physical chemistry chemical physics : PCCP 17 (48) 32122-32125 2015/12

    DOI: 10.1039/C5CP05765E  

    ISSN: 1463-9076

    eISSN: 1463-9084

  40. Self-replication of DNA rings Peer-reviewed

    Junghoon Kim, Junwye Lee, Shogo Hamada, Satoshi Murata, Sung Ha Park

    NATURE NANOTECHNOLOGY 10 (6) 528-U102 2015/06

    DOI: 10.1038/NNANO.2015.87  

    ISSN: 1748-3387

    eISSN: 1748-3395

  41. Polymorphic Ring-Shaped Molecular Clusters Made of Shape-Variable Building Blocks Peer-reviewed

    Keitel Cervantes-Salguero, Shogo Hamada, Shin-ichiro M. Nomura, Satoshi Murata

    NANOMATERIALS 5 (1) 208-217 2015/03

    DOI: 10.3390/nano5010208  

    ISSN: 2079-4991

  42. Polymorphic Ring-Shaped Molecular Clusters Made of Shape-Variable Building Blocks Peer-reviewed

    Keitel Cervantes-Salguero, Shogo Hamada, Shin-ichiro M. Nomura, Satoshi Murata

    NANOMATERIALS 5 (1) 208-217 2015/03

    DOI: 10.3390/nano5010208  

    ISSN: 2079-4991

  43. Yusuke Yonamine, Keitel Cervantes-Salguero, Waka Nakanishi, Ibuki Kawamata, Kosuke Minami, Hirokazu Komatsu, Satoshi Murata, Jonathan P. Hillab, Katsuhiko Ariga. Peer-reviewed

    Yusuke Yonamine, Keitel Cervantes-Salguero, Waka Nakanishi, Ibuki Kawamata, Kosuke Minami, Hirokazu Komatsu, Satoshi Murata, Jonathan, P. Hillab, Katsuhiko Ariga

    Physical Chemistry Chemical Physics 17 32122-32125 2015

    DOI: 10.1039/C5CP05765E  

  44. Lattice-Based Modular Self-Reconfigurable Systems Peer-reviewed

    Kohji Tomita, Haruhisa Kurokawa, Eiichi Yoshida, Akiya Kamimura, Satoshi Murata, Shigeru Kokaji

    Robots and Lattice Automata, The series Emergence, Complexity and Computation 13 77-96 2014/10/12

  45. DNA ナノテクノロジーのためのアウトリーチツールの開発と評価 Peer-reviewed

    吉澤 慧, 藤原 慶, 野村 M, 慎一郎, 村田 智

    形の科学会誌 29 (2) 2014/09

  46. Introducing Micrometer-Sized Artificial Objects into Live Cells: A Method for Cell-Giant Unilamellar Vesicle Electrofusion Peer-reviewed

    Akira C. Saito, Toshihiko Ogura, Kei Fujiwara, Satoshi Murata, Shin-ichiro M. Nomura

    PLOS ONE 9 (9) 2014/09

    DOI: 10.1371/journal.pone.0106853  

    ISSN: 1932-6203

  47. Molecular Robots with Sensors and Intelligence Invited Peer-reviewed

    Masami Hagiya, Akihiko Konagaya, Satoshi Kobayashi, Hirohide Saito, Satoshi Murata

    ACCOUNTS OF CHEMICAL RESEARCH 47 (6) 1681-1690 2014/06

    DOI: 10.1021/ar400318d  

    ISSN: 0001-4842

    eISSN: 1520-4898

  48. 2P315 Toward creating an autonomous mobile artificial amoeba(28. Bioengineering,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

    Tanaka Yoshiaki, Hiratsuka Yuichi, Fujiwara Kei, Murata Satoshi, M. Nomura Shinichiro

    Seibutsu Butsuri 54 (1) S247 2014

    Publisher: The Biophysical Society of Japan General Incorporated Association

    DOI: 10.2142/biophys.54.S247_3  

  49. 3SAA-01 Molecular Robotics - Perspectives and Motivation(Development of Molecular Robots equipped with Sensors and Intelligence,Symposium,The 52th Annual Meeting of the Biophysical Society of Japan(BSJ2014))

    Murata Satoshi

    Seibutsu Butsuri 54 (1) S135 2014

    Publisher: The Biophysical Society of Japan General Incorporated Association

    DOI: 10.2142/biophys.54.S135_6  

  50. 2P179 Introducing micro-meter size objects into live cells mediated by cell-GUV electrofusion(12. Cell biology,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

    Saito Akira C., Ogura Toshihiko, Fujiwara Kei, Murata Satoshi, Nomura Shinichiro M.

    Seibutsu Butsuri 54 (1) S224 2014

    Publisher: The Biophysical Society of Japan General Incorporated Association

    DOI: 10.2142/biophys.54.S224_5  

  51. On DNA-based gellular automata Peer-reviewed

    Masami Hagiya, Shaoyu Wang, Ibuki Kawamata, Satoshi Murata, Teijiro Isokawa, Ferdinand Peper, Katsunobu Imai

    Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 8553 (8553) 177-189 2014

    Publisher: Springer Verlag

    DOI: 10.1007/978-3-319-08123-6_15  

    ISSN: 1611-3349 0302-9743

  52. DNA Computing and Molecular Programming: 20th International Conference, DNA 20 Kyoto, Japan, September 22-26, 2014 Proceedings Peer-reviewed

    Satoshi Murata, Satoshi Kobayashi

    Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 8727 2014

    Publisher: Springer Verlag

    DOI: 10.1007/978-3-319-11295-4  

    ISSN: 1611-3349 0302-9743

  53. Quantitative analysis of molecular-level DNA crystal growth on a 2D surface Peer-reviewed

    Junwye Lee, Shogo Hamada, Si Un Hwang, Rashid Amin, Junyoung Son, Sreekantha Reddy Dugasani, Satoshi Murata, Sung Ha Park

    SCIENTIFIC REPORTS 3 2013/07

    DOI: 10.1038/srep02115  

    ISSN: 2045-2322

  54. Layer-by-layer assembly of photonic crystal using DNA Peer-reviewed

    Yoshinori Kimura, Shohei Kaneda, Teruo Fujii, Satoshi Murata

    Electronics and Communications in Japan 96 (5) 42-49 2013/05

    DOI: 10.1002/ecj.11377  

    ISSN: 1942-9533 1942-9541

  55. 2P314 Stability of designed high-order DNA structures under unconventional conditions(28. Bioengineering,Poster)

    Endo Masahiro, Fujiwara Kei, Murata Satoshi, Nomura Shin-ichiro

    Seibutsu Butsuri 53 (1) S211 2013

    Publisher: The Biophysical Society of Japan General Incorporated Association

    DOI: 10.2142/biophys.53.S211_1  

  56. 2P315 Self-assembly and reconfiguration of multiple-sized closed structures made of DNA origami units(28. Bioengineering,Poster)

    Cervantes Keitel, Hamada Shogo, Nomura Shin-ichiro, Murata Satoshi

    Seibutsu Butsuri 53 (1) S211 2013

    Publisher: The Biophysical Society of Japan General Incorporated Association

    DOI: 10.2142/biophys.53.S211_2  

  57. 3P124 Design and construction of a DNA microcapsule toward lightresponsive molecular robots(05A. Nucleic acid: Structure & Property,Poster)

    Tsuganezawa Yuichi, Morita Masamune, Hamada Shogo, Nomura Shin-ichiro M., Fujimoto Kenzo, Murata Satoshi, Takinoue Masahiro

    Seibutsu Butsuri 53 (1) S232 2013

    Publisher: The Biophysical Society of Japan General Incorporated Association

    DOI: 10.2142/biophys.53.S232_3  

  58. Molecular Robotics: A New Paradigm for Artifacts Invited Peer-reviewed

    Satoshi Murata, Akihiko Konagaya, Satoshi Kobayashi, Hirohide Saito, Masami Hagiya

    NEW GENERATION COMPUTING 31 (1) 27-45 2013/01

    DOI: 10.1007/s00354-012-0121-z  

    ISSN: 0288-3635

  59. Size-Controllable DNA Rings with Copper-Ion Modification Peer-reviewed

    Junwye Lee, Shogo Hamada, Rashid Amin, Sunho Kim, Atul Kulkarni, Taesung Kim, Yonghan Roh, Satoshi Murata, Sung Ha Park

    SMALL 8 (3) 374-377 2012/02

    DOI: 10.1002/smll.201101561  

    ISSN: 1613-6810

    eISSN: 1613-6829

  60. 1PT226 Artificial Panspermia by Molecular Robots(The 50th Annual Meeting of the Biophysical Society of Japan)

    Endo Masahiro, Fujiwara Kei, Hamada Syougo, Murata Satoshi, Nomura Shin-ichiro M

    Seibutsu Butsuri 52 S107 2012

    Publisher: The Biophysical Society of Japan General Incorporated Association

    DOI: 10.2142/biophys.52.S107_1  

  61. 3PT112 Adsorption of DNA ring onto Liposome(The 50th Annual Meeting of the Biophysical Society of Japan)

    Kumagai Yumiko, Hamada Shogo, Nomura Shin-ichiro, Murata Satoshi

    Seibutsu Butsuri 52 S159 2012

    Publisher: The Biophysical Society of Japan General Incorporated Association

    DOI: 10.2142/biophys.52.S159_4  

  62. 3PT113 Substrate-Assisted Self-Assembly of DNA Nanostructure on lipid bilayer(The 50th Annual Meeting of the Biophysical Society of Japan)

    Kudo Shogo, Hamada Shogo, Nomura Shin-ichiro, Murata Satoshi

    Seibutsu Butsuri 52 S159 2012

    Publisher: The Biophysical Society of Japan General Incorporated Association

    DOI: 10.2142/biophys.52.S159_5  

  63. The future of self-organizing robots Peer-reviewed

    Satoshi Murata, Haruhisa Kurokawa

    Springer Tracts in Advanced Robotics 77 235-246 2012

    DOI: 10.1007/978-4-431-54055-7_10  

    ISSN: 1610-7438 1610-742X

  64. Hardware and software Peer-reviewed

    Satoshi Murata, Haruhisa Kurokawa

    Springer Tracts in Advanced Robotics 77 211-233 2012

    DOI: 10.1007/978-4-431-54055-7_9  

    ISSN: 1610-7438 1610-742X

  65. Basics in mathematics and distributed algorithms Peer-reviewed

    Satoshi Murata, Haruhisa Kurokawa

    Springer Tracts in Advanced Robotics 77 59-75 2012

    DOI: 10.1007/978-4-431-54055-7_4  

    ISSN: 1610-7438 1610-742X

  66. Self-organization of motion Peer-reviewed

    Satoshi Murata, Haruhisa Kurokawa

    Springer Tracts in Advanced Robotics 77 173-209 2012

    DOI: 10.1007/978-4-431-54055-7_8  

    ISSN: 1610-7438 1610-742X

  67. Designing by self-organization Peer-reviewed

    Satoshi Murata, Haruhisa Kurokawa

    Springer Tracts in Advanced Robotics 77 1-18 2012

    DOI: 10.1007/978-4-431-54055-7_1  

    ISSN: 1610-7438 1610-742X

  68. Prototypes of self-organizing robots Peer-reviewed

    Satoshi Murata, Haruhisa Kurokawa

    Springer Tracts in Advanced Robotics 77 105-130 2012

    DOI: 10.1007/978-4-431-54055-7_6  

    ISSN: 1610-7438 1610-742X

  69. Self-organization of biological systems Peer-reviewed

    Satoshi Murata, Haruhisa Kurokawa

    Springer Tracts in Advanced Robotics 77 19-35 2012

    DOI: 10.1007/978-4-431-54055-7_2  

    ISSN: 1610-7438 1610-742X

  70. Robotic metamorphosis Peer-reviewed

    Satoshi Murata, Haruhisa Kurokawa

    Springer Tracts in Advanced Robotics 77 131-171 2012

    DOI: 10.1007/978-4-431-54055-7_7  

    ISSN: 1610-7438 1610-742X

  71. Artificial self-assembly and self-repair Peer-reviewed

    Satoshi Murata, Haruhisa Kurokawa

    Springer Tracts in Advanced Robotics 77 77-103 2012

    DOI: 10.1007/978-4-431-54055-7_5  

    ISSN: 1610-7438 1610-742X

  72. Theoretical model of substrate-assisted self-assembly of DNA nanostructures Invited Peer-reviewed

    Shogo Hamada, Satoshi Murata

    RSC ADVANCES 2 (19) 7406-7412 2012

    DOI: 10.1039/c2ra20764h  

    ISSN: 2046-2069

  73. Algorithmic Self-assembly of Single-duplex DNA Nanostructures Invited Peer-reviewed

    Shogo Hamada, Satoshi Murata

    INTERNATIONAL JOURNAL OF UNCONVENTIONAL COMPUTING 7 (1-2) 25-37 2011

    ISSN: 1548-7199

    eISSN: 1548-7202

  74. Layer-by-layer assembly of photonic crystal using DNA Peer-reviewed

    Yoshinori Kimura, Shohei Kaneda, Teruo Fujii, Satoshi Murata

    IEEJ Transactions on Sensors and Micromachines 131 (8) 286-291 2011

    DOI: 10.1541/ieejsmas.131.286  

    ISSN: 1341-8939 1347-5525

  75. Construction of a genetic AND gate under a new standard for assembly of genetic parts Peer-reviewed

    Shotaro Ayukawa, Akio Kobayashi, Yusaku Nakashima, Hidemasa Takagi, Shogo Hamada, Masahiko Uchiyama, Katsuyuki Yugi, Satoshi Murata, Yasubumi Sakakibara, Masami Hagiya, Masayuki Yamamura, Daisuke Kiga

    BMC Genomics 11 (4) 2010/12/02

    DOI: 10.1186/1471-2164-11-S4-S16  

    ISSN: 1471-2164

  76. DNAナノ構造の自己組織化 Invited Peer-reviewed

    村田 智

    応用電子物性分科会誌 16 (3) 89-91 2010/07/26

  77. The Mechanism of Cell Cycle Arrest Front Progression Explained by a KLUH/CYP78A5-dependent Mobile Growth Factor in Developing Leaves of Arabidopsis thaliana Peer-reviewed

    Toshiya Kazama, Yasunori Ichihashi, Satoshi Murata, Hirokazu Tsukaya

    PLANT AND CELL PHYSIOLOGY 51 (6) 1046-1054 2010/06

    DOI: 10.1093/pcp/pcq051  

    ISSN: 0032-0781

  78. Substrate-assisted Self-assembly of DNAnanostructure and its application in Molecular Robotics Invited Peer-reviewed

    Satoshi Murata

    Proc. FNANO2010 2010/04

  79. Extending the Geometrical Design of DNA Nanostructures Peer-reviewed

    Shogo Hamada, Satoshi Murata

    NATURAL COMPUTING 2 (3) 157-164 2010

    DOI: 10.1007/978-4-431-53868-4_18  

    ISSN: 1867-2914

  80. Precise Simulation Model for DNA Tile Self-Assembly Peer-reviewed

    Kenichi Fujibayashi, Satoshi Murata

    IEEE TRANSACTIONS ON NANOTECHNOLOGY 8 (3) 361-368 2009/05

    DOI: 10.1109/TNANO.2008.2011776  

    ISSN: 1536-125X

  81. Graph-rewriting automata as a natural extension of cellular automata Peer-reviewed

    Kohji Tomita, Haruhisa Kurokawa, Satoshi Murata

    Understanding Complex Systems 2009 291-309 2009

    DOI: 10.1007/978-3-642-01284-6_14  

    ISSN: 1860-0832 1860-0840

  82. Toward Flexible and Scalable Self-reconfiguration of M-TRAN Peer-reviewed

    Haruhisa Kurokawa, Kohji Tomita, Akiya Kamimura, Satoshi Murata

    DISTRIBUTED AUTONOMOUS ROBOTIC SYSTEMS 8 405-+ 2009

    DOI: 10.1007/978-3-642-00644-9_36  

  83. Error suppression mechanisms for DNA tile self-assembly and their simulation Peer-reviewed

    Kenichi Fujibayashi, David Yu Zhang, Erik Winfree, Satoshi Murata

    Natural Computing 8 (3) 589-612 2009

    DOI: 10.1007/s11047-008-9093-9  

    ISSN: 1567-7818

  84. Substrate-Assisted Assembly of Interconnected Single-Duplex DNA Nanostructures Peer-reviewed

    Shogo Hamada, Satoshi Murata

    ANGEWANDTE CHEMIE-INTERNATIONAL EDITION 48 (37) 6820-6823 2009

    DOI: 10.1002/anie.200902662  

    ISSN: 1433-7851

    eISSN: 1521-3773

  85. Toward reliable algorithmic self-assembly of DNA tiles: A fixed-width cellular automaton pattern Peer-reviewed

    Kenichi Fujibayashi, Rizal Hariadi, Sung Ha Park, Erik Winfree, Satoshi Murata

    NANO LETTERS 8 (7) 1791-1797 2008/07

    DOI: 10.1021/nl0722830  

    ISSN: 1530-6984

  86. Tutorial on programming natural systems: Part 1. Molecular systems: DNA-based nanosystems Peer-reviewed

    Satoshi Murata, Milan N. Stojanovic

    New Generation Computing 26 (3) 297-312 2008/05

    DOI: 10.1007/s00354-008-0047-7  

    ISSN: 0288-3635

  87. Distributed self-reconfiguration of M-TRAN III modular robotic system Peer-reviewed

    Haruhisa Kurokawa, Kohji Tomita, Akiya Kamimura, Shigeru Kokaji, Takashi Hasuo, Satoshi Murata

    INTERNATIONAL JOURNAL OF ROBOTICS RESEARCH 27 (3-4) 373-386 2008/03

    DOI: 10.1177/0278364907085560  

    ISSN: 0278-3649

    eISSN: 1741-3176

  88. Automatic modular assembly system and its distributed control Peer-reviewed

    Yuzuru Terada, Satoshi Murata

    INTERNATIONAL JOURNAL OF ROBOTICS RESEARCH 27 (3-4) 445-462 2008/03

    DOI: 10.1177/0278364907085562  

    ISSN: 0278-3649

    eISSN: 1741-3176

  89. Stepwise assembly of DNA tile on surfaces Peer-reviewed

    Kotaro Somei, Shohei Kaneda, Teruo Fujii, Satoshi Murata

    DNA COMPUTING 4848 182-+ 2008

    ISSN: 0302-9743

  90. DNA-based Nanosystems Peer-reviewed

    Satoshi Murata, Milan Stojanovic

    New Generation Computing 2008

  91. Toward a scalable modular robotic system - Navigation, docking, and integration of M-TRAN Peer-reviewed

    Satoshi Murata, Kiyoharu Kakomura, Haruhisa Kurokawa

    IEEE ROBOTICS & AUTOMATION MAGAZINE 14 (4) 56-63 2007/12

    DOI: 10.1109/M-RA.2007.908984  

    ISSN: 1070-9932

  92. Self-reconfigurable robots - Shape-changing cellular robots can exceed conventional robot flexibility Peer-reviewed

    Satoshi Murata, Haruhisa Kurokawa

    IEEE ROBOTICS & AUTOMATION MAGAZINE 14 (1) 71-78 2007/03

    DOI: 10.1109/MRA.2007.339607  

    ISSN: 1070-9932

    eISSN: 1558-223X

  93. Multistate part for mesoscale self-assembly Peer-reviewed

    Daiko Tsutsumi, Satoshi Murata

    Proceedings of the SICE Annual Conference 890-895 2007

    DOI: 10.1109/SICE.2007.4421110  

  94. Emerging cell array based on reaction-diffusion Peer-reviewed

    Shuhei Miyashita, Satoshi Murata

    Artificial Life and Robotics 11 (1) 32-36 2007/01

    DOI: 10.1007/s10015-006-0394-8  

    ISSN: 1433-5298

  95. A robustness distributed system with sensing and fault detection for large-scale sensor networks Peer-reviewed

    Kiyohiko Hattori, Keiki Takadama, Satoshi Murata, Hiroshi Furuya

    PROCEEDINGS OF SICE ANNUAL CONFERENCE, VOLS 1-8 1157-1161 2007

  96. Self-reconfigurable modular robot M-TRAN: distributed control and communication. Peer-reviewed

    Haruhisa Kurokawa, Kohji Tomita, Akiya Kamimura, Shigeru Kokaji, Takashi Hasuo, Satoshi Murata

    Proceedings of the 1st International Conference on Robot Communication and Coordination, ROBOCOMM 2007, Athens, Greece, October 15-17, 2007 21 2007

    Publisher: ICST/ACM

    DOI: 10.4108/ICST.ROBOCOMM2007.2119  

  97. 非円形歯車を用いた可変剛性間接 Peer-reviewed

    松田壮史, 村田 智

    日本ロボット学会誌 25 (3) 429-439 2007

    Publisher: The Robotics Society of Japan

    DOI: 10.7210/jrsj.25.429  

    ISSN: 0289-1824

    More details Close

    This paper presents design of a new antagonistic variable stiffness hinge using noncircular gears. First, we show a method to convert a torsion spring to an arbitrary nonlinear torsion spring by nonuniform circular motion of noncircular gears. This nonlinear torsion spring is called ρ2-Spring. Next, a pair of ρ2-Springs are connected antagonistically to comprise a variable stiffness joint. Moreover, the design method of ρ2-Spring and β2-Hinge which have arbitrary characteristic is developed. We explain the characteristics of this joint theoretically and evaluate its capability of wide range stiffness. We also present experimental results of the prototype.

  98. 剛性分布制御による環状ロボットの運動生成 Peer-reviewed

    松田壮史, 村田 智

    日本ロボット学会誌 25 (2) 231-240 2007

    Publisher: The Robotics Society of Japan

    DOI: 10.7210/jrsj.25.231  

    ISSN: 0289-1824

    More details Close

    This paper proposes a new method of locomotion control named "Stiffness Distribution Control (SDC) " to realize various locomotion of a closed loop robot with mechanical softness on the ground. SDC directly defines a reference stiffness coefficient at each hinge by a SDC string, which represents distribution of stiffness coefficient. This simple method does not need costly calculation at all and thus is suitable for controlling closed loop robots. We build a closed loop robot "BIYOn" with newly designed variable stiffness hinges. SDC is experimented on the robot and effectiveness of SDC is verified in practice. A two-stage systematic optimization approach for SDC strings, which is composed of "hinge-wise optimization method" and "collective descent optimization method, " is also developed to obtain efficient locomotions. The former is the method focused on functions of each hinge in desired locomotion, and the latter is to optimize the solutions based on local solutions ontained in the first stage. This approach does not require a large amount of computation to get global optimal SDC strings. By this approach, we succeed in obtaining a fast and smooth rolling motion and a sudden stopping motion.

  99. Asynchronous graph-rewriting automata and simulation of synchronous execution Peer-reviewed

    Kohji Tomita, Satoshi Murata, Haruhisa Kurokawa

    ADVANCES IN ARTIFICIAL LIFE, PROCEEDINGS 4648 865-+ 2007

    ISSN: 0302-9743

  100. Self-description for construction and computation on graph-rewriting automata Peer-reviewed

    Kohji Tomita, Satoshi Murata, Haruhisa Kurokawa

    Artificial Life 13 (4) 383-396 2007

    DOI: 10.1162/artl.2007.13.4.383  

  101. Thermodynamic simulations of DNA tile self-assembly Peer-reviewed

    Kenichi Fujibayashi, Satoshi Murata

    2nd International Conference on Nano-Networks 1-6 2007

  102. Design of DNA spike oscillator Peer-reviewed

    Kohta Suzuki, S. Murata

    Unconventional Computing 2007 163-175 2007

  103. Asynchronous cell division model for morphogenesis of plant leaves Peer-reviewed

    Toshiya Kazama, Satoshi Murata

    5th International Workshop on Functional-Structural Plant Models (FSPM07) 1-3 2007

  104. Automatic generation of self-replicating patterns in graph automata Peer-reviewed

    Kohji Tomita, Haruhisa Kurokawa, Satoshi Murata

    INTERNATIONAL JOURNAL OF BIFURCATION AND CHAOS 16 (4) 1011-1018 2006/04

    DOI: 10.1142/S0218127406015258  

    ISSN: 0218-1274

    eISSN: 1793-6551

  105. Self-reconfigurable M-TRAN structures and walker generation Peer-reviewed

    H Kurokawa, E Yoshida, K Tomita, A Kamimura, S Murata, S Kokaji

    ROBOTICS AND AUTONOMOUS SYSTEMS 54 (2) 142-149 2006/02

    DOI: 10.1016/j.robot.2005.09.023  

    ISSN: 0921-8890

  106. Modular structure assembly using gradient field Peer-reviewed

    Yuzuru Terada, Satoshi Murata

    2006 IEEE/RSJ INTERNATIONAL CONFERENCE ON INTELLIGENT ROBOTS AND SYSTEMS, VOLS 1-12 604-+ 2006

  107. A microfluidic device for DNA tile self-assembly Peer-reviewed

    K Somei, S Kaneda, T Fujii, S Murata

    DNA COMPUTING 3892 325-335 2006

    DOI: 10.1007/11753681_25  

    ISSN: 0302-9743

  108. Distributed metamorphosis control of a modular robotic system M-TRAN Peer-reviewed

    Haruhisa Kurokawa, Kohji Tomita, Akiya Kamimura, Satoshi Murata, Yuzuru Terada, Shigeru Kokaji

    DISTRIBUTED AUTONOMOUS ROBOTIC SYSTEMS 7 115-124 2006

    DOI: 10.1007/4-431-35881-1-12  

  109. Concept of Inflatable Tensegrity for Large Space Structures Peer-reviewed

    Hiroshi Furuya, Makiko Nakahara, Satoshi Murata, Daisuke Jodoi, Yuzuru Terada, Keiki Takadama

    AIAA/ASME/ASCE/AHS/ASC Structures, Structural Dyanamics, and Materials Conference AIAA2006-1700 1-9 2006

  110. Hybridization in a Microfluidic Device for DNA Tile Self-Assembly Peer-reviewed

    Koutaro Somei, Shohei Kaneda, Teruo Fujii, Satoshi Murata

    Foundation of NanoScience (FNANO06) 148-152 2006

  111. Stiffness Distribution Control - Locomotion of closed link robot with mechanical softness Peer-reviewed

    Takeshi Matsuda, Satoshi Murata

    2006 IEEE INTERNATIONAL CONFERENCE ON ROBOTICS AND AUTOMATION (ICRA), VOLS 1-10 1491-+ 2006

    DOI: 10.1109/ROBOT.2006.1641919  

    ISSN: 1050-4729

  112. Docking experiments of a modular robot by visual feedback Peer-reviewed

    Satoshi Murata, Kiyoharu Kakomura, Haruhisa Kurokawa

    2006 IEEE/RSJ INTERNATIONAL CONFERENCE ON INTELLIGENT ROBOTS AND SYSTEMS, VOLS 1-12 625-+ 2006

    DOI: 10.1109/IROS.2006.282545  

  113. Modular Structure Assembly Using Blackboard Path Planning System Peer-reviewed

    Yuzuru Terada, Satoshi Murata

    22nd International Symposium on Automation and Robotics in Construction (ISARC 2006) 852-857 2006

  114. Modular structure assembly using gradient field Peer-reviewed

    Yuzuru Terada, Satoshi Murata

    IEEE International Conference on Intelligent Robots and Systems 604-611 2006

    DOI: 10.1109/IROS.2006.282542  

  115. Automatic locomotion design and experiments for a modular robotic system Peer-reviewed

    A Kamimura, H Kurokawa, E Yoshida, S Murata, K Tomita, S Kokaji

    IEEE-ASME TRANSACTIONS ON MECHATRONICS 10 (3) 314-325 2005/06

    DOI: 10.1109/TMECH.2005.848299  

    ISSN: 1083-4435

    eISSN: 1941-014X

  116. A method of error suppression for self-assembling DNA tiles Peer-reviewed

    K Fujibayashi, S Murata

    DNA COMPUTING 3384 113-127 2005

    ISSN: 0302-9743

  117. Self-description for construction and execution in graph rewriting automata Peer-reviewed

    K Tomita, S Murata, A Kamimura, H Kurokawa

    ADVANCES IN ARTIFICAL LIFE, PROCEEDINGS 3630 705-715 2005

    DOI: 10.1007/11553090_71  

    ISSN: 0302-9743

  118. Topology changes enable reaction-diffusion to generate forms Peer-reviewed

    S Miyashita, S Murata

    ADVANCES IN ARTIFICAL LIFE, PROCEEDINGS 3630 159-168 2005

    ISSN: 0302-9743

  119. 大規模モジュラー構造物の自動組立システムの設計 Peer-reviewed

    寺田 弦, 村田 智

    日本ロボット学会誌 23 (5) 612-618 2005

    Publisher: The Robotics Society of Japan

    DOI: 10.7210/jrsj.23.612  

    ISSN: 0289-1824

    More details Close

    The purpose of this paper is to show the way of automatic building construction using specially designed modules. The modules are not only building blocks of the structure, but have function of automatic assemble controlled by a robot, which is also specially designed for handling the module. The shape of module is suitable for easy alignment, and automatic connection mechanism is equipped for inter-module connection. The assembler robot is able to move on the structure made of modules, carries the module to desired position and orientation, and assembles them (connect it to other modules) . The modular design of the whole system realizes well balanced allocation of important functions required for building construction, and it eventually reduces the total complexity of the system.

  120. Inflatable Tensegrity Module for a Large-Scale Space Structure and Its Construction Scenario Peer-reviewed

    Satoshi Murata, Daisuke Jodoi, Hiroshi Furuya, Yuzuru Terada, Keiki Takadama

    56th International Astronautical Congress, D1.1.01 2005

  121. Automatic Assembly System for Modular Structure Peer-reviewed

    Yuzuru Terada, Satoshi Murata

    22nd International Symposium on Automation and Robotics in Construction (ISARC’05) 1-5 2005

  122. Distributed self-reconfiguration control of modular robot M-TRAN Peer-reviewed

    Haruhisa Kurokawa, Kohji Tomita, Akiya Kamimura, Eiichi Yoshida, Shigeru Kokaji, Satoshi Murata

    2005 IEEE International Conference on Mechatronics and Automations, Vols 1-4, Conference Proceedings 254-259 2005

  123. Self-Reconfigurable Robots: Platforms for Emerging Functionality, Embodied Artificial Intelligence Peer-reviewed

    Satoshi Murata, Akiya Kamimura, Haruhisa Kurokawa, Eiichi Yoshida, Kohji Tomita, Shigeru Kokaji

    LNAI3139 312-330 2004

  124. モジュール型ロボットの移動パターン自動生成に関する研究 Peer-reviewed

    神村 明哉, 黒河 治久, 吉田 英一, 村田 智, 富田 康治, 小鍜治 繁

    日本機械学会論文集 C60 (690) 459-466 2004

    DOI: 10.1299/kikaic.70.459  

  125. Concept of Automatic Assembly System for Large Modular Structure Peer-reviewed

    Yuzuru Terada, Haruhisa Kurokawa, Satoshi Murata

    Conference on Intelligent Autonomous Systems (IAS-8) 739-745 2004

  126. Deformable Multi M-TRAN Structure Works as Walker Generator Peer-reviewed

    Haruhisa Kurokawa, Eiichi Yoshida, Kohji Tomita, Akiya Kamimura, Satoshi Murata, Shigeru Kokaji

    Conference on Intelligent Autonomous Systems (IAS-8) 746-753 2004

  127. Distributed Adaptive Locomotion by a Modular Robotic System, M-TRAN II (From Local Adaptation to Global Coordinated Motion Using CPG Controllers) Peer-reviewed

    Akiya Kamimura, Haruhisa Kurokawa, Eiichi Yoshida, Satoshi Murata, Kohji Tomita, Shigeru Kokaji

    IEEE/RSJ International Conference on Intelligent Robots and Systems (IROS2004) 2370-2377 2004

  128. Automatic Assembly System for a Large-Scale Modular Structure ~Hardware design of module and assembler robot Peer-reviewed

    Yuzuru Terada, Satoshi Murata

    IEEE/RSJ International Conference on Intelligent Robots and Systems (IROS2004) 2349-2355 2004

  129. Planning Behaviors of a Modular Robot Peer-reviewed

    Eiichi Yoshida, Haruhisa Kurokawa, Akiya Kamimura, Satoshi Murata, Kohji Tomita, Shigeru Kokaji

    IEEE/RSJ International Conference on Intelligent Robots and Systems (IROS2004) 2056-2061 2004

  130. Self-reconfigurable robots: Platforms for emerging functionality Peer-reviewed

    S Murata, A Kamimura, H Kurokawa, E Yoshida, K Tomita, S Kokaji

    EMBODIED ARTIFICIAL INTELLIGENCE 3139 312-330 2004

    ISSN: 0302-9743

  131. Autonomous Modular Robot M-TRAN for Metamorphosis and Locomotion

    KUROKAWA Haruhisa, YOSHIDA Eiichi, KAMIMURA Akiya, TOMITA Kohji, MURATA Satoshi, KOKAJI Shigeru

    JRSJ 21 (8) 855-859 2003/11/15

    Publisher: The Robotics Society of Japan

    DOI: 10.7210/jrsj.21.855  

    ISSN: 0289-1824

  132. Evolutionary Motion Synthesis for a Modular Robot using Genetic Algorithm Peer-reviewed

    Eiichi Yoshida, Satoshi Murata, Akiya Kamimura, Kohji Tomita, Haruhisa Kurokawa, Shigeru Kokaji

    Journal of Robotics and Mechatronics 15 (2) 227-237 2003

  133. A Self-Reconfigurable Modular Robot: Reconfiguration Planning and Experiments Peer-reviewed

    Eiichi Yoshida, Satoshi Murata, Akiya Kamimura, Kohji Tomita, Haruhisa Kurokawa, Shigeru Kokaji

    The International Journal of Robotics Research 21 (10) 903-916 2003

  134. グラフオートマタ-システム生成過程の記述法 Peer-reviewed

    村田 智, 富田 康治, 黒河 治久

    計測自動制御学会論文集 39 (1) 67-73 2003

    Publisher: The Society of Instrument and Control Engineers

    DOI: 10.9746/sicetr1965.39.67  

    ISSN: 0453-4654

    More details Close

    A variety of models of self-reproduction process have been proposed since von Neumann initiated this field. Almost all of them are described within the framework of two-dimensional cellular automata. They are heavily dependent on or limited by the peculiar properties of the two dimensional lattice spaces, but such properties are irrelevant to the essential nature of self-reproduction. In this paper, we introduce a new framework called "graph automata" to obtain a natural description of complicated spatio-temporal developmental processes. As an illustrative example, a self-reproduction of Turing machine, which requires very long description by conventional cellular automata, is shown in a simple and straightforward formulation.

  135. Self-organizing Formation Algorithm for Active Elements Peer-reviewed

    Kenichi Fujibayashi, Satoshi Murata, Ken Sugawara, Masayuki Yamamura

    Forma 18 (2) 83-95 2003

  136. Evolutionary synthesis of dynamic motion and reconfiguration process for a modular robot M-TRAN Peer-reviewed

    E Yoshida, S Murata, A Kamimura, K Tomita, H Kurokawa, S Kokaji

    2003 IEEE INTERNATIONAL SYMPOSIUM ON COMPUTATIONAL INTELLIGENCE IN ROBOTICS AND AUTOMATION, VOLS I-III, PROCEEDINGS 1004-1010 2003

    DOI: 10.1109/CIRA.2003.1222317  

  137. Automatic locomotion pattern generation for modular robots Peer-reviewed

    A Kamimura, H Kurokawa, E Yoshida, K Tomita, S Murata, S Kokaji

    2003 IEEE INTERNATIONAL CONFERENCE ON ROBOTICS AND AUTOMATION, VOLS 1-3, PROCEEDINGS 714-720 2003

    ISSN: 1050-4729

  138. Automatic Generation of Self-Replicating Patterns in Graph Automata Peer-reviewed

    Kohji Tomita, Satoshi Murata, Haruhisa Kurokawa

    Shanghai International Symposium on Nonlinear Science and Application 2003

  139. Homogeneous distributed mechanical systems Peer-reviewed

    S Murata, E Yoshida, A Kamimura, K Tomita, H Kurokawa, S Kokaji

    MORPHO-FUNCTIONAL MACHINES: THE NEW SPECIES 167-193 2003

  140. Get back in shape! Peer-reviewed

    E Yoshida, S Murata, S Kokaji, A Kamimura, K Tomita, H Kurokawa

    IEEE ROBOTICS & AUTOMATION MAGAZINE 9 (4) 54-60 2002/12

    ISSN: 1070-9932

  141. M-TRAN: Self-reconfigurable modular robotic system Peer-reviewed

    S Murata, E Yoshida, A Kamimura, H Kurokawa, K Tomita, S Kokaji

    IEEE-ASME TRANSACTIONS ON MECHATRONICS 7 (4) 431-441 2002/12

    DOI: 10.1109/TMECH.2002.806220  

    ISSN: 1083-4435

  142. Get back in shape! Peer-reviewed

    Eiichi Yoshida, Satoshi Murata, Shigeru Kokaji, Akiya Kamimura, Kohji Tomita, Haruhisa Kurokawa

    IEEE Robotics and Automation Magazine 9 (4) 54-60 2002/12

    DOI: 10.1109/MRA.2002.1160072  

    ISSN: 1070-9932

  143. Graph automata: natural expression of self-reproduction Peer-reviewed

    K Tomita, H Kurokawa, S Murata

    PHYSICA D-NONLINEAR PHENOMENA 171 (4) 197-210 2002/11

    DOI: 10.1016/S0167-2789(02)00601-2  

    ISSN: 0167-2789

  144. Self-organizing formation algorithm for active elements

    Kenichi Fujibayashi, Satoshi Murata, Ken Sugawara, Masayuki Yamamura

    Proceedings of the IEEE Symposium on Reliable Distributed Systems 416-421 2002/01/01

    ISSN: 1060-9857

  145. 自己組み立て可能なモジュール型ロボットシステムに関する研究 (複数ユニットによる変形・移動実験) Peer-reviewed

    神村明哉, 村田 智, 吉田英一, 黒河治久, 富田康治, 小鍜治繁

    日本機械学会論文集C編 68 (667) 886-892 2002

    DOI: 10.1299/kikaic.68.886  

  146. A Motion Generation Method for a Modular Robot Peer-reviewed

    Eiichi Yoshida, Satoshi Murata, Akiya Kamimura, Kohji Tomita, Haruhisa Kurokawa, Shigeru Kokaji

    Journal of Robotics and Mechatronics 14 (2) 177-185 2002

  147. Distributed replication algorithms for self-reconfiguring modular robots Peer-reviewed

    Z Butler, S Murata, D Rus

    DISTRIBUTED AUTONOMOUS ROBOTIC SYSTEMS 5 37-48 2002

  148. A self-reconfigurable modular robot (MTRAN) - Hardware and motion planning software Peer-reviewed

    A Kamimura, E Yoshida, S Murata, H Kurokawa, K Tomita, S Kokaji

    DISTRIBUTED AUTONOMOUS ROBOTIC SYSTEMS 5 17-26 2002

  149. System Generation by Graph Automata Peer-reviewed

    Satoshi Murata, Kohji Tomita, Haruhisa Kurokawa

    the 4th International Workshop on Emergent Synthesis (IWES''02) 47-52 2002

  150. Self-Reconfigurable Modular Robot (M-TRAN) and its Motion Design Peer-reviewed

    Haruhisa Kurokawa, Akiya Kamimura, Eiichi Yoshida, Kohji Tomita, Satoshi Murata, Shigeru Kokaji

    Seventh International Conference on Control, Automation, Robotics And Vision (ICARV''02) 51-56 2002

  151. Concept of self-reconfigurable modular robotic system Peer-reviewed

    S Murata, E Yoshida, H Kurokawa, K Tomita, SF Kokaji

    ARTIFICIAL INTELLIGENCE IN ENGINEERING 15 (4) 383-387 2001/10

    DOI: 10.1016/S0954-1810(01)00024-3  

    ISSN: 0954-1810

  152. Self-repairing mechanical systems Peer-reviewed

    S Murata, E Yoshida, H Kurokawa, K Tomita, S Kokaji

    AUTONOMOUS ROBOTS 10 (1) 7-21 2001/01

    DOI: 10.1023/A:1026540318188  

    ISSN: 0929-5593

    eISSN: 1573-7527

  153. Self-Configurable Machine, ~Self-assembly of distributed unit structured mechanical system~ Peer-reviewed

    Satoshi Murata, Haruhisa Kurokawa, Shigeru Kokaji

    Transactions of the Society of Instrument and Control Engineers E-1 187-196 2001

  154. Micro Self- Reconfigurable Modular Robot Using Shape Memory Alloy Peer-reviewed

    Eiichi Yoshida, Satoshi Murata, Shigeru Kokaji, Kohji Tomita, Haruhisa Kurokawa

    Journal of Robotics and Mechatronics 13 (2) 212-219 2001

  155. Motion planning for a self-reconfigurable modular robot Peer-reviewed

    E Yoshida, S Murata, A Kamimura

    EXPERIMENTAL ROBOTICS VII 271 385-394 2001

    ISSN: 0170-8643

  156. Reconfiguration planning for a self-assembling modular robot Peer-reviewed

    E Yoshida, S Murata, A Kamimura

    PROCEEDINGS OF THE 2001 IEEE INTERNATIONAL SYMPOSIUM ON ASSEMBLY AND TASK PLANNING (ISATP2001) 276-281 2001

  157. A motion planning method for a self-reconfigurable modular robot Peer-reviewed

    E Yoshida, S Murata, A Kamimura, K Tomita, H Kurokawa, S Kokaji

    IROS 2001: PROCEEDINGS OF THE 2001 IEEE/RJS INTERNATIONAL CONFERENCE ON INTELLIGENT ROBOTS AND SYSTEMS, VOLS 1-4 590-597 2001

  158. Self-reconfigurable modular robot - Experiments on reconfiguration and locomotion Peer-reviewed

    A Kamimura, S Murata, E Yoshida, H Kurokawa, K Tomita, S Kokaji

    IROS 2001: PROCEEDINGS OF THE 2001 IEEE/RJS INTERNATIONAL CONFERENCE ON INTELLIGENT ROBOTS AND SYSTEMS, VOLS 1-4 606-612 2001

  159. Micro self-reconfigurable robotic: System using shape memory alloy Peer-reviewed

    E Yoshida, S Murata, S Kokaji, K Tomita, H Kurokawa

    DISTRIBUTED AUTONOMOUS ROBOTIC SYSTEMS 145-154 2000

  160. A Distributed Method for Reconfiguration of 3-D Homogeneous Structure Peer-reviewed

    Eiichi Yoshida, Satoshi Murata, Haruhisa Kurokawa, Kohji Tomita, Shigeru Kokaji

    Advanced Robotics 13 (4) 363-380 2000

  161. Miniaturization of Self-Reconfigurable Robotic System using Shape Memory Alloy Actuator Peer-reviewed

    Eiichi Yoshida, Shigeru Kokaji, Satoshi Murata, Kohji Tomita, Haruhisa Kurokawa

    Journal of Robotics and Mechatronics 12 (2) 96-102 2000

  162. A three-dimensional self-reconfigurable system Peer-reviewed

    H Kurokawa, S Murata, E Yoshida, K Tomita, S Kokaji

    ADVANCED ROBOTICS 13 (6) 591-602 2000

    ISSN: 0169-1864

    eISSN: 1568-5535

  163. Self-reconfigurable robot - Module design and simulation Peer-reviewed

    S Murata, K Tomita, E Yoshida, H Kurokawa, S Kokaji

    INTELLIGENT AUTONOMOUS SYSTEMS 6 911-917 2000

  164. Motion simulation of a modular robotic system Peer-reviewed

    H. Kurokawa, K. Tomita, E. Yoshida, S. Murata, S. Kokaji

    IECON Proceedings (Industrial Electronics Conference) 1 2473-2478 2000

    Publisher: IEEE Computer Society

    DOI: 10.1109/IECON.2000.972385  

  165. Hardware design of modular robotic system Peer-reviewed

    S Murata, E Yoshida, K Tomita, H Kurokawa, A Kamimura, S Kokaji

    2000 IEEE/RSJ INTERNATIONAL CONFERENCE ON INTELLIGENT ROBOTS AND SYSTEMS (IROS 2000), VOLS 1-3, PROCEEDINGS 2210-2217 2000

  166. Development of a self-reconfigurable modular robotic system Peer-reviewed

    K Tomita, S Murata, E Yoshida, H Kurokawa, A Kamimura, S Kokaji

    SENSOR FUSION AND DECENTRALIZED CONTROL IN ROBOTIC SYSTEMS III 4196 469-476 2000

    DOI: 10.1117/12.403745  

    ISSN: 0277-786X

  167. Self-Repairing Mechanical System Peer-reviewed

    Satoshi Murata

    Robotics and Machine Perception (SPIE) 2000

  168. Self-assembly and self-repair method for a distributed mechanical system Peer-reviewed

    K Tomita, S Murata, H Kurokawa, E Yoshida, S Kokaji

    IEEE TRANSACTIONS ON ROBOTICS AND AUTOMATION 15 (6) 1035-1045 1999/12

    DOI: 10.1109/70.817668  

    ISSN: 1042-296X

  169. An experimental study on a self-repairing modular machine Peer-reviewed

    E Yoshida, S Murata, K Tomita, H Kurokawa, S Kokaji

    ROBOTICS AND AUTONOMOUS SYSTEMS 29 (1) 79-89 1999/10

    DOI: 10.1016/S0921-8890(99)00040-8  

    ISSN: 0921-8890

    eISSN: 1872-793X

  170. 自律分散機械による3次元形状の自己組み立てと自己修復 Peer-reviewed

    吉田英一, 村田 智, 小鍜治繁, 富田康治, 黒河治久

    計測自動制御学会論文集 35 (11) 1421-1430 1999

    Publisher:

    DOI: 10.9746/sicetr1965.35.1421  

    ISSN: 0453-4654

  171. Miniature self-reconfigurable modular machine using shape memory alloy Peer-reviewed

    E Yoshida, S Kokaji, S Murata, K Tomita, H Kurokawa

    ADVANCED ROBOTICS 13 (3) 337-338 1999

    ISSN: 0169-1864

  172. Self-repairing mechanical system Peer-reviewed

    S Murata, E Yoshida, H Kurokawa, K Tomita, S Kokaji

    SENSOR FUSION AND DECENTRALIZED CONTROL IN ROBOTIC SYSTEMS II 3839 202-213 1999

    ISSN: 0277-786X

  173. Miniaturized Self- Reconfigurable System using Shape Memory Alloy Peer-reviewed

    Eiichi Yoshida, Shigeru Kokaji, Satoshi Murata, Kohji Tomita, Haruhisa Kurokawa

    IEEE/RSJ International Conference on Intelligent Robots and Systems (IROS’99) 1579-1585 1999

  174. Self-Reconfigurable Modular Robotic System Peer-reviewed

    Satoshi Murata, Eiichi Yoshida, Kohji Tomita, Haruhisa Kurokawa, Shigeru Kokaji

    International Workshop on Emergent Synthesis (IWES’99) 113-118 1999

  175. A distributed method for reconfiguration of a three-dimensional homogeneous structure Peer-reviewed

    Echi Yoshida, Satoshi Murata, Haruhisa Kurokawa, Kohji Tomita, Shigeru Kokaji

    Advanced Robotics 13 (4) 363-379 1998/01/01

    DOI: 10.1163/156855399X00234  

    ISSN: 1568-5535 0169-1864

  176. Experiment of Self-repairing Modular Machine Peer-reviewed

    Eiichi Yoshida, Satoshi Murata, Kohji Tomita, Haruhisa Kurokawa, Shigeru Kokaji

    Distributed Autonomous Robotic Systems 3, Springer-Verlag 119-128 1998

  177. A 3-D self-reconfigurable structure Peer-reviewed

    S Murata, H Kurokawa, E Yoshida, K Tomita, S Kokaji

    1998 IEEE INTERNATIONAL CONFERENCE ON ROBOTICS AND AUTOMATION, VOLS 1-4 432-439 1998

    ISSN: 1050-4729

  178. A distributed reconfiguration method for 3-D homogeneous structure Peer-reviewed

    E Yoshida, S Murata, H Kurokawa, K Tomita, S Kokaji

    1998 IEEE/RSJ INTERNATIONAL CONFERENCE ON INTELLIGENT ROBOTS AND SYSTEMS - PROCEEDINGS, VOLS 1-3 852-859 1998

  179. A 3-D self-reconfigurable structure and experiments Peer-reviewed

    H Kurokawa, S Murata, E Yoshida, K Tomita, S Kokaji

    1998 IEEE/RSJ INTERNATIONAL CONFERENCE ON INTELLIGENT ROBOTS AND SYSTEMS - PROCEEDINGS, VOLS 1-3 860-865 1998

  180. Distributed Self-Reconfiguration Method of a Modular Mechanical System Peer-reviewed

    Eiichi Yoshida, Satoshi Murata, Shigeru Kokaji, Kohji Tomita, Haruhisa Kurokawa

    Journal of Mechanical Engineering Laboratory 52 (5) 165-174 1998

    Publisher:

    ISSN: 0388-4252

  181. Control of Autonomous Vehicles with Vehicle-to-Vehicle Communication Peer-reviewed

    Teruo Yatabe, Takeshi Hirose, Sadayuki Tsugawa, Satoshi Murata

    Journal of Mechanical Engineering Laboratory 52 (5) 181-188 1998

    Publisher:

    ISSN: 0388-4252

  182. 機械の自己組み立てと自己修復 Peer-reviewed

    村田 智, 富田康治, 黒河治久, 小鍜治繁

    計測自動制御学会論文集 33 (5) 424-432 1997

    Publisher: The Society of Instrument and Control Engineers

    DOI: 10.9746/sicetr1965.33.424  

    ISSN: 0453-4654

    More details Close

    Self-assembly and self-repair algorithm for homogeneous distributed mechanical systems is proposed. We focused on a category of a distributed system composed of numbers of identical units which can dynamically change connections among them. Each unit has an onboard micro-processor and local communication between neighboring units is assumed to be available. A group of the unit with random configuration at the initial time metamorphoses into desired shape by cooperation of the units. This process called "self-assembly" is realized by homogeneous software. An extension of this process, "self-repair" is also examined. In self-repair, cut off of an arbitrary part of the system is considered. When some part of the system detects a damage the whole system degenerates and reconstructs itself.

  183. Self-Assembly Method for Mechanical Structure Peer-reviewed

    Satoshi Murata, Haruhisa Kurokawa, Kohji Tomita, Shigeru Kokaji

    Journal of Artificial Life and Robotics 1 111-115 1997

    DOI: 10.1007/BF02471124  

  184. Self-Assembly of a Distributed Mechanical System Peer-reviewed

    Eiichi Yoshida, Satoshi Murata, Kohji Tomita, Haruhisa Kurokawa, Shigeru Kokaji

    International Symposium of System Life 93-99 1997

  185. Distributed Formation Control of a Modular Mechanical System Peer-reviewed

    Eiichi Yoshida, Satoshi Murata, Kohji Tomita, Haruhisa Kurokawa, Shigeru Kokaji

    IEEE/RSJ International Conference on Intelligent Robots and Systems (IROS’97) 1090-1097 1997

  186. Clock synchronization mechanisms for a distributed autonomous system Peer-reviewed

    Shigeru Kokaji, Satoshi Murata, Haruhisa Kurokawa, Kohji Tomita

    Journal of Robotics and Mechatronics 8 (5) 427-434 1996

  187. Reconfiguration Method for a Distributed Mechanical System Peer-reviewed

    Kohji Tomita, Satoshi Murata, Eiichi Yoshida, Haruhisa Kurokawa, Shigeru Kokaji

    Distributed Autonomous Robotic Systems 2, Springer-Verlag 2 17-25 1996

    Publisher:

  188. 自律分散システムでの時計合わせ問題 Peer-reviewed

    小鍛冶繁, 村田智, 黒河治久, 富田康治

    機械技術研究所所報 50 (6) 161-168 1996

    Publisher:

    ISSN: 0388-4252

  189. 自己修復する機械-分散ユニット構成による自己組み立て- Peer-reviewed

    村田 智, 黒河治久, 小鍜治繁

    計測自動制御学会論文集 31 (2) 254-262 1995

    DOI: 10.9746/sicetr1965.31.254  

  190. マシンビジョンによるインテリジェントビークルのプレビューラテラル制御 Peer-reviewed

    富田康治, 村田 智, 津川定之

    システム制御情報学会誌 7 (2) 35-41 1994

    Publisher: THE INSTITUTE OF SYSTEMS, CONTROL AND INFORMATION ENGINEERS (ISCIE)

    DOI: 10.5687/iscie.7.35  

    ISSN: 1342-5668

    More details Close

    This paper describes a new preview lateral control algorithm for autonomous vehicles with machine vision and experiments with an AGV conducted to demonstrate the feasibility of the algorithm. Compensation of the delay due to the time for image processing is also considered.<BR>The steering control algorithm uses a reference line along a path for lateral control. It finds the control by approximating the reference line with a cubic curve, a coefficient of which gives the steering control. The algorithm uses the whole information in the two-dimensional field of view, which enables robust and smooth lateral control even if a reference line is not aligned or is composed of only straight segments.

  191. SELF-ASSEMBLING MACHINE Peer-reviewed

    S MURATA, H KUROKAWA, S KOKAJI

    1994 IEEE INTERNATIONAL CONFERENCE ON ROBOTICS AND AUTOMATION: PROCEEDINGS, VOLS 1-4 441-448 1994

    ISSN: 1050-4729

  192. Self-Organization of a Mechanical System Peer-reviewed

    Shigeru Kokaji, Satoshi Murata, Haruhisa Kurokawa

    Distributed Autonomous Robotic Systems, Springer-Verlag 237-242 1994

  193. ONBOARD LOCATING SYSTEM USING REAL-TIME IMAGE-PROCESSING FOR A SELF-NAVIGATING VEHICLE Peer-reviewed

    S MURATA, T HIROSE

    IEEE TRANSACTIONS ON INDUSTRIAL ELECTRONICS 40 (1) 145-154 1993/02

    DOI: 10.1109/41.184831  

    ISSN: 0278-0046

  194. Preview Lateral Control with Machine Vision for Intelligent Vehicle Peer-reviewed

    Kohji Tomita, Satoshi Murata, Sadayuki Tsugawa

    Intelligent Vehicles Symposium 7 467-472 1993

  195. 差動オドメタによる無人搬送車のデッドレコニング Peer-reviewed

    村田智, 広瀬武志

    機械技術研究所所報 47 (1) p1-9 1993

    Publisher:

    ISSN: 0388-4252

  196. 車両間通信を用いた車両群のロンジチュージナル制御 Peer-reviewed

    津川定之, 村田智

    機械技術研究所所報 47 (2) p38-46 1993

    Publisher:

    ISSN: 0388-4252

  197. Visual Navigation of an Autonomous Vehicle along a Line Peer-reviewed

    Kohji Tomita, Satoshi Murata, Sadayuki Tsugawa, Elizabeth Stack

    US-Japan Symposium on Factory Automation 1321-1327 1992

  198. A Decision Making Network for Cell Structured Machine Peer-reviewed

    Haruhisa Kurokawa, Satoshi Murata, Shigeru Kokaji

    International Conference on Distributed Autonomous Robot System (DARS’92) 53-58 1992

  199. DESIGN OF A HIGH-GAIN REGULATOR BY THE MULTIPLE TIME SCALE APPROACH Peer-reviewed

    S MURATA, Y ANDO, M SUZUKI

    AUTOMATICA 26 (3) 585-591 1990/05

    DOI: 10.1016/0005-1098(90)90030-L  

    ISSN: 0005-1098

    eISSN: 1873-2836

  200. 車両間通信による自律車両群の走行制御 Peer-reviewed

    津川定之, 村田 智, 広瀬武志, 谷田部照男

    計測自動制御学会論文集 26 (9) 1058-1065 1990

    DOI: 10.9746/sicetr1965.26.1058  

  201. Control of Autonomous Vehicles with Vehicle-to-Vehicle Communication Peer-reviewed

    Teruo Yatabe, Takeshi Hirose, Sadayuki Tsugawa, Satoshi Murata

    Control, Computers, Communications in Transportation (CCCT''89) 553-558 1989

  202. Onboard Locating System of Autonomous Vehicle Peer-reviewed

    Satoshi Murata, Takeshi Hirose

    International Conference on Intelligent Robots and Systems (IROS’89) 228-234 1989

  203. 自律車両の操舵アルゴリズム Peer-reviewed

    津川定之, 村田 智

    システム制御学会論文集 2 (10) 360-362 1989

    Publisher: THE INSTITUTE OF SYSTEMS, CONTROL AND INFORMATION ENGINEERS (ISCIE)

    DOI: 10.5687/iscie.2.360  

    ISSN: 1342-5668

  204. Vehicle Following System using Vehicle-to-Vehicle Communication -Its Concept, Control Algorithm and Communication System Peer-reviewed

    Sadayuki Tsugawa, Satoshi Murata, Teruo Yatabe, Takeshi Hirose

    US-Japan Symposium on Factory Automation II 621-628 1988

  205. マルチタイムスケール法によるハイゲインレギュレータの設計 Peer-reviewed

    村田智, 安藤嘉則, 鈴木正之

    計測自動制御学会論文集 23 (11) 1158-1164 1987

    DOI: 10.9746/sicetr1965.23.1158  

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  4. Making pores on membrane using DNA origami: Design and function evaluation of .PHI.12 nm artificial channel

    岩渕祥璽, 片山航一郎, 川又生吹, 鈴木勇輝, 村田智, 野村M.慎一郎

    形の科学シンポジウム講演予稿集(Web) 85th 11‐12 (WEB ONLY) 2018/06

    ISSN: 2433-6173

  5. 環境応答能を有するらせん状DNAオリガミナノ構造体の構築

    水野康平, 鈴木勇輝, 川又生吹, 野村慎一郎, 村田智

    自律分散システム・シンポジウム(CD-ROM) 30th ROMBUNNO.1A1‐3 2018/01/28

  6. DNA反応拡散系によるゲル媒質中でのパターン形成

    安部桂太, 川又生吹, 鈴木勇輝, 野村M, 慎一郎, 村田智

    自律分散システム・シンポジウム(CD-ROM) 30th ROMBUNNO.1A1‐2 2018/01/28

  7. Robustness of DNA Strand Displacement Systems (accepted)

    Takashi Nakakuki, Jun-ichi Imura, Ibuki Kawamata, Satoshi Murata

    5th IFAC Conference on Analysis and Control of Chaotic Systems 2018

  8. 膜アンカー型温度応答性高分子が誘起する巨大リポソームの凝集と融合

    飛田航, 森本展之, 川又生吹, 村田智, 野村M.慎一郎

    高分子学会予稿集(CD-ROM) 66 (1) ROMBUNNO.3Pd112 2017/05/15

  9. Renewal of the Major Fields

    Masami Hagiya, Kazunori Ueda, Ryutaro Ichise, Ferdinand Peper, Satoshi Murata

    NEW GENERATION COMPUTING 35 (2) 125-128 2017/04

    DOI: 10.1007/s00354-017-0013-3  

    ISSN: 0288-3635

    eISSN: 1882-7055

  10. ヘアピンDNA連鎖反応を用いたリポソームの凝集制御

    大瀧悠登, 川又生吹, 高畠芙弥, 野村M慎一郎, 村田智

    自律分散システム・シンポジウム(CD-ROM) 29th ROMBUNNO.1B2‐4 2017/01/30

  11. 周期的状態遷移セルを持つ非同期セルオートマトンとその計算能力

    礒川悌次郎, PEPER Ferdinand, 川又生吹, 松井伸之, 村田智, 萩谷昌巳

    自律分散システム・シンポジウム(CD-ROM) 29th ROMBUNNO.1B2‐1 2017/01/30

  12. Special Issue: DNA Computing 2014 Preface

    Satoshi Murata, Masami Hagiya

    NATURAL COMPUTING 15 (2) 195-196 2016/06

    DOI: 10.1007/s11047-016-9558-1  

    ISSN: 1567-7818

    eISSN: 1572-9796

  13. DNAナノテクノロジーへの招待 第1回DNAナノテクノロジー~構造をつくり,計算し,ナノロボットを動かす

    村田 智

    現代化学 541 47-51 2016/04

  14. DNA Nanotechnology ~Building Structure, Computing, Actuating Nanorobots

    MURATA Satoshi

    Gendai Kagaku 2016/04

  15. DNAオリガミとその応用

    村田 智

    B&I(バイオサイエンスとインダストリー) 74 (3) 1-6 2016/03

  16. A study on robustness of DNA strand displacement reactions

    Omagari T, Nakakuki T, Kawamata I, Murata S

    Proceedings of the Japan Joint Automatic Control Conference 59 (0) 1256-1260 2016

    Publisher: The Japan Joint Automatic Control Conference

    More details Close

    &lt;p&gt;How to construct a reliable and robust DNA circuit is one of most important issues in the field of molecular programming and computing. In this study, we consider the robustness of DNA strand displacement reaction from the viewpoint of L2 gain. After giving the problem statement, we provide some implications for DNA circuits constructed by reversible or irreversible DNA strand displacement reactions.&lt;/p&gt;

  17. 21aPS-4 Reaction-Diffusion Model for Gel-Sol Transition of DNA-Crosslinked Polyacrylamide Hydrogels

    Takabatake F, Kawamata I, Sugawara K, Murata S

    Meeting Abstracts of the Physical Society of Japan 70 (0) 2852-2852 2015

    Publisher: The Physical Society of Japan

    DOI: 10.11316/jpsgaiyo.70.1.0_2852  

    ISSN: 2189-079X

  18. 21pm1-F4 DNA Gel Computing for Slime-type Molecular Robot

    Murata Satoshi

    2014 (6) "21pm1-F4-1"-"21pm1-F4-2" 2014/10/20

    Publisher: The Japan Society of Mechanical Engineers

    More details Close

    Slime-type type robot is a one of prototypes of molecular robots investigated in the molecular robotics project (Grant-in-Aid for Innovative Areas: Molecular Robotics). They are made of gel medium containing various molecules with functions of computing, sensing and actuating. Here we propose some possible implementation of computing mechanisms for the slime-type molecular robot.

  19. 21pm1-F3 Toward construction an artificial molecular amoeba model

    NOMURA M. Shin-ichiro, TANAKA Yoshiaki, HIRATSUKA Yuichi, FUJIWARA Kei, MURATA Satoshi

    2014 (6) "21pm1-F3-1"-"21pm1-F3-2" 2014/10/20

    Publisher: The Japan Society of Mechanical Engineers

    More details Close

    We are aiming at creating molecular robots with controllable mobility. Here we report our attempt to build an autonomous mobile artificial amoeba-like structure, which is consists of linear motor proteins (kinesin/microtubules) and giant liposomes. It is known that liposomal membrane can be transformed by the combination of kinesin and microtubules. Adding ATP to the mixture of kinesin-coated liposomes with microtubules organized an aster-like structure. The bundled microtubules were observed by phase contrast microscopy. After formation of the structures, they started translational motion to random direction. We are planning to utilize the aster as a movable frame or a controllable skeleton of an amoeba-like molecular robot.

  20. History of self-organizing machines

    Satoshi Murata, Haruhisa Kurokawa

    Springer Tracts in Advanced Robotics 77 37-57 2012

    DOI: 10.1007/978-4-431-54055-7_3  

    ISSN: 1610-7438 1610-742X

  21. A Crystal Growth Approach for DNA Nano-Structure Formation

    Hitoshi Miura, Yuya Ueno, Shogo Hamada, Satoshi Murata, Katsuo Tsukamoto

    ACTA CRYSTALLOGRAPHICA A-FOUNDATION AND ADVANCES 67 C537-C537 2011

    DOI: 10.1107/S0108767311086430  

    ISSN: 2053-2733

  22. 特集「分子ロボティクス」

    村田 智

    日本ロボット学会誌 28 (10) 2010/12/15

    Publisher: 日本ロボット学会

  23. DNAタイル

    村田智, 浜田省吾

    日本ロボット学会誌 28 (10) 1158-1161 2010/12/15

    Publisher: The Robotics Society of Japan

    DOI: 10.7210/jrsj.28.1158  

    ISSN: 0289-1824

  24. Temperature dependence of DNA tile crystal

    UENO YUYA, TSUKAMOTO KATSUO, MURATA SATOSHI, HAMADA SHOGO

    結晶成長国内会議予稿集 39th 134 2009

    ISSN: 0385-6275

  25. DNA分子を素材とするナノ構造の作成技術

    村田 智

    化学工業 60 (1) 1-5 2009

  26. Planning behaviors of modular robots with coherent structure using randomized method Peer-reviewed

    Yoshida E, Kurokawa H, Kamimura A, Murata S, Tomita K, Kokaji S

    149-+ 2007

    DOI: 10.1007/978-4-431-35873-2_15  

  27. DNAタイルのプログラム自己集積

    村田 智

    日本結晶成長学会誌 34 (2) 51-55 2007

    DOI: 10.19009/jjacg.34.2_51  

  28. Docking of Modular Robots by Visual Feedback

    KAKOMURA Kiyoharu, MURATA Satoshi, KUROKAWA Haruhisa

    18 53-56 2006/01/26

  29. Distributed Control System of M-TRAN and Experiments of Self-reconfiguration

    KUROKAWA Haruhisa, TOMITA Kohji, KAMIMURA Akiya, MURATA Satoshi, KOKAJI Shigeru

    18 49-52 2006/01/26

  30. Research on self-reconfigurable modular robot system - (Experiments on reconfiguration and locomotion with several modules)

    A Kamimura, S Murata, E Yoshida, H Kurokawa, K Tomita, S Kokaji

    JSME INTERNATIONAL JOURNAL SERIES C-MECHANICAL SYSTEMS MACHINE ELEMENTS AND MANUFACTURING 46 (4) 1490-1496 2003/12

    ISSN: 1344-7653

  31. Machines that Metamorphose

    MURATA Satoshi, KUROKAWA Haruhisa, KAMIMURA Akiya

    18 (1) 44-45 2003/06/01

    ISSN: 0915-6089

  32. Experimental study on evolutionary motion generation of modular robot

    Yoshida E., Kamimura A., Murata S., Tomita K., Kurokawa H., Kokaji K.

    2003 111-111 2003

    Publisher: The Japan Society of Mechanical Engineers

  33. M-TRAN II: Metamorphosis from a four-legged walker to a caterpillar Peer-reviewed

    H Kurokawa, A Kamimura, E Yoshida, K Tomita, S Kokaji, S Murata

    IROS 2003: PROCEEDINGS OF THE 2003 IEEE/RSJ INTERNATIONAL CONFERENCE ON INTELLIGENT ROBOTS AND SYSTEMS, VOLS 1-4 2454-2459 2003

  34. Self-reconfigurable modular robots - Hardware and software development in AIST Peer-reviewed

    Yoshida E, Murata S, Kamimura A, Tomita K, Kurokawa H, Kokaji S, Ieee

    339-346 2003

    DOI: 10.1109/RISSP.2003.1285597  

  35. モジューラーロボットの研究

    村田 智

    日本ロボット学会誌 21 (8) 830-831 2003

    DOI: 10.7210/jrsj.21.830  

  36. 進化した合体変形ロボットー移動パターンの自動生成と自立変形動作の実現

    神村明哉, 黒河治久, 吉田英一, 村田 智, 富田康治, 小鍜治繁

    AIST Today 3 (6) 24 2003

  37. モジュール型ロボットの動作生成に関する研究:創発的手法の適用の試み

    吉田 英一, 神村 明哉, 富田 康治, 黒河 治久, 小鍛治 繁, 村田 智

    精密工学会大会学術講演会講演論文集 2002 (1) 161-161 2002/03/01

  38. On Dual Graph Automata

    KUROKAWA Haruhisa, TOMITA Kohji, MURATA Satoshi

    14 267-272 2002/01/25

  39. A study on motion generation of a modular robot : Towards an evolutionary method

    Yoshida E., Kamimura A., Murata S., Tomita K., Kurokawa H., Kokaji S.

    2002 61-61 2002

    Publisher: The Japan Society of Mechanical Engineers

  40. 再構成可能なモジュール型ロボットシステムに関する研究

    神村 明哉, 村田 智, 吉田 英一, 黒河 治久, 富田 康治, 小鍛冶 繁

    精密工学会大会学術講演会講演論文集 2001 (2) 23-23 2001/09/01

  41. 2P1-E2 Motion Planning for Self-Assembly by a Modular Robot

    Yoshida E., Murata S., Kamimura A., Tomita K., Kurokawa H., Kokaji S.

    2001 58-58 2001/06/08

    Publisher: The Japan Society of Mechanical Engineers

  42. モジュール型自己組立ロボット

    村田 智

    機械の研究 53 (9) 913-920 2001

  43. SMAを用いたユニット型機械のマイクロ化

    吉田 英一, 村田 智, 小鍜治 繁, 富田 康治, 黒河 治久

    精密工学会大会学術講演会講演論文集 2000 (1) 421-421 2000/03/01

  44. Design and Control of Miniaturized Modular Machine using Shape Memory Alloy

    YOSHIDA Eiichi, MURATA Satoshi, KOKAJI Shigeru, TOMITA Kohji, KUROKAWA Haruhisa

    12 257-260 2000/01/21

  45. Development of Self-Reconfigurable Robotic Unit

    MURATA Satoshi, TOMITA Kohji, YOSHIDA Eiichi, KUROKAWA Haruhisa, KOKAJI Shigeru

    12 251-255 2000/01/21

  46. 1A1-32-041 SMA を用いたマイクロ自己組み立て機械ユニット

    吉田 英一, 村田 智, 小鍜治 繁, 富田 康治, 黒河 治久

    ロボティクス・メカトロニクス講演会講演概要集 2000 35-35 2000

    Publisher: 一般社団法人日本機械学会

    More details Close

    形状記憶合金(SMA)アクチュエータを用いた, マイクロサイズのユニット機械システムについて報告する。同一構造を持つこれらのユニットの集合体は, 様々な2次元形状の自己組み立てが可能である。SMAトーションばねによる回転アクチュエータにより動作する, 2cm立方程度の大きさのユニットを製作し, 自己組み立ての基本動作を確認する。また, 3次元化の可能性についても触れる。

  47. モジュール型自己組立ロボットの開発

    村田 智

    M&E 10 190-198 2000

  48. 知の創発、14章 形を自在に変えるーユニット機械

    村田 智

    ユニット機械 262-283 2000

  49. SMAを用いた小型ユニット型機械による自己組み立て実験

    吉田 英一, 小鍛冶 繁, 村田 智, 富田 康治, 黒河 治久

    精密工学会大会学術講演会講演論文集 1999 (2) 36-36 1999/09/01

  50. 形状記憶合金を用いた小型分散ユニット機械 -多数台の自己組立手法-

    吉田 英一, 小鍛冶 繁, 村田 智, 富田 康治, 黒河 治久

    精密工学会大会学術講演会講演論文集 1999 (1) 523-523 1999/03/05

  51. Self-repair of a large-scale system by 3-D mechanical units

    YOSHIDA Eiichi, KOKAJI Shigeru, MURATA Satoshi, TOMITA Kohji, KUROKAWA Haruhisa

    11 249-252 1999/01/18

  52. 形状記憶合金を用いた小型分散ユニット機械の設計

    吉田 英一, 小鍛冶 繁, 村田 智, 富田 康治, 黒河 治久

    精密工学会大会学術講演会講演論文集 1998 (2) 613-613 1998/09/01

  53. Self-assembly of 3-D distributed mechanical units

    YOSHIDA Eiichi, MURATA Satoshi, TOMITA Kohji, KUROKAWA Haruhisa, KOKAJI Shigeru

    10 331-334 1998/01/20

  54. 自己修復する機械

    小鍜治繁, 村田 智, 吉田英一, 黒河治久, 富田康治

    インテリジェント材料 8 (3) 21-28 1998

  55. 分散型ユニット機械による立体構造の生成

    吉田 英一, 村田 智, 富田 康治, 黒河 治久, 小鍛治 繁

    精密工学会大会学術講演会講演論文集 1997 (2) 518-518 1997/10/01

  56. 均質構造をもつロボット群による分散的形態生成

    吉田 英一, 村田 智, 富田 康治, 黒河 治久, 小鍛治 繁

    精密工学会大会学術講演会講演論文集 1997 (1) 575-576 1997/03/01

  57. Design of Distributed Mechanical System (6th Report) : Design of 3 Dimensional Unit System

    MURATA Satoshi, KUROKAWA Haruhisa, YOSHIDA Eiichi, TOMITA Kohji, KOKAJI Shigeru

    9 21-24 1997/01/16

  58. 均質ユニットによる機械のかたちづくり

    村田 智

    日本ロボット学会誌 15 (4) 675-679 1997

    Publisher: The Robotics Society of Japan

    DOI: 10.7210/jrsj.15.675  

    ISSN: 0289-1824

  59. 分散ユニットの自己修復実験に成功

    村田 智

    電子情報通信学会誌 97 (12) 1314 1997

  60. Design of Distributed Mechanical System (5th Report) : Layered Construction of Large Scale Unit Structure

    MURATA Satoshi, TOMITA Kohji, KUROKAWA Haruhisa, KOKAJI Shigeru

    8 307-312 1996/01/17

  61. ユニット型機械の可能性

    村田 智, 小鍜治繁

    計測と制御 35 (7) 550-553 1996

    Publisher: 計測自動制御学会

    DOI: 10.11499/sicejl1962.35.7_550  

    ISSN: 0453-4662

  62. 自己修復する機械

    村田 智

    自動車技術 50 (12) 54-56 1996

  63. 自己修復する機械

    村田 智

    工業技術 36 (4) 77-78 1995

  64. 自己組み立て機械から自己修復機械へ

    村田 智

    ゑれきてる 54 (17-20) 1994

  65. 自己組織型機械システム「フラクタム」

    村田 智

    日本機械学会誌 98 (916) 213 1994

  66. 自己修復する機械を作る

    村田 智

    bit 1994-10 65-72 1994

  67. 分散アクチュエータ群の協調制御技術

    小鍜治繁, 村田 智, 黒河治久, 鈴木章夫

    計測と制御 31 (11) 1131-1136 1992

    Publisher: The Society of Instrument and Control Engineers

    DOI: 10.11499/sicejl1962.31.1131  

    ISSN: 0453-4662

  68. 自律分散機械と情報処理

    小鍜治繁, 村田 智, 黒河治久, 鈴木章夫

    情報処理 33 (6) 665-672 1991

  69. やわらかい機械とモジュール化,自己組織化

    小鍜治繁, 村田 智, 黒河治久, 鈴木章夫

    精密工学会誌 57 (12) 2113-2116 1991

    Publisher: The Japan Society for Precision Engineering

    DOI: 10.2493/jjspe.57.2113  

    ISSN: 0912-0289

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Books and Other Publications 14

  1. Introduction to Molecular Robotics

    Moleaular Robotics Research Group

    CBI Society Press 2019/05

  2. DNA分子デザインのすべて BIOMOD虎の巻

    村田 智他, 子ロボティクス研究会編

    情報計算化学生物学会 (CBI学会)出版 2016/04

    ISBN: 9784990370893

  3. ロボット制御学ハンドブック

    村田 智

    近代科学社 2016/01/01

  4. Self-Organizing Robots

    Satoshi Murata, Haruhisa Kurokawa

    Springer 2012/01

  5. ロボットテクノロジー

    日本ロボット学会編

    オーム社 2011/08

  6. DNAナノエンジニアリング

    小宮健, 瀧ノ上正浩, 田中文昭, 浜田省吾, 村田智

    近代科学社 2011/04/30

  7. DNAフラクタル構造体の創製,トポロジーデザイニング-新しい幾何学からはじめる物質・材料設計-

    村田 智

    エヌティーエス 2009

  8. 自己組織機械システムの設計論

    村田 智, 黒河治久

    オーム社 2009

  9. 細胞型ロボット(SRロボット), 日本機械学会編

    村田 智

    丸善 2008

  10. モジュールロボットの自己組織化,自己組織化ハンドブック

    村田 智

    エヌティーエス 2008

  11. DNAタイルのセルフアセンブリ

    村田 智

    シーエムシー出版 2008

  12. DNAタイル・DNAオリガミ,自己組織化ハンドブック

    村田 智

    エヌティーエス 2008

  13. 生物の形-システムの生成と進化の観点から

    村田 智, 伏見譲, 西垣功一

    培風館 2006

  14. 日本機械学会編: メカノクリーチャ-生物から学ぶデザインテクノロジー-

    村田 智

    コロナ社 2003

Show all Show first 5

Presentations 93

  1. Pattern Formation and Computation by Autonomous Chemical Reaction Diffusion Model Inspired by Cellular Automaton International-presentation

    Ibuki Kawamata, Takuto Hosoya, Fumi Takabatake, Ken Sugawara, Shin-ichiro M. Nomura, Teijiro Isokawa, Ferdinand Peper, Masami Hagiya, Satoshi Murata

    The Frouth International Symposium on Computing and Networking 2016/11

  2. Spatio-temporal evolution of programmed DNA reaction-diffusion system in hydrogel medium

    Ibuki Kawamata, Keita Abe, Fumi Takabatake, Shin-ichiro M. Nomura, Satoshi Murata

    Japanese Society for Cell Synthesis Research 9.0 2016/11

  3. Construction of Self-Assembled DNA microstructures for synthesis of molecular robots

    M.Morita, S.M.Nomura, S.Murata, M.Yanagisawa, M.Takinoue

    CBI2016 2016/10/25

  4. A Universal Asynchronous Cellular Automaton with Cyclic-States Cells

    T.Isokawa, F.Peper, I.Kawamata, N.Matsui, S. Murata, M.Hagiya

    CBI2016 2016/10/25

  5. Membrane-like structure made of DNA motifs

    Endo Y, T. Uchida, I.Kawamata, Y.Suzuki, S.M.Nomura, S. Murata

    CBI2016 2016/10/25

  6. Control of DNA hybridization by Electric fields

    Cervantes-Salguero, K. I.Kawamata, S.M.Nomura, S. Murata

    CBI2016 2016/10/25

  7. Simulation of DNA Nanostructure Self-assembly by using Game Engines

    Dammaretz T, S. Liu, I.Kawamata, S.Murata

    CBI2016 2016/10/25

  8. Controlling diffusion coefficient in gelatinous medium by using DNA strand displacement

    Rodjanapanyakul T, K. Cervantes-Salguero, I.Kawamata, S.Murata

    CBI2016 2016/10/25

  9. Autonomous and Programmable Strand Generator Implemented as DNA Chemical Reaction Network International-presentation

    Ibuki Kawamata, Shota Kawakami, Yu-chin Chen, Shogo Hiratsuka, Sho Aradachi, Daisuke Tamatsuki, Hayato Yuuki, Takuto Takahashi, Eiki Ishihara, Shunsuke Imai, Hayato Otaka, Yuto Otaki, Kenta Suzuki, Taiki Watanabe, Ken Komiya, Fumi Takabatake, Shin-ichiro M. Nomura, Satoshi Murata

    The 22nd International Meeting on DNA Computing and Molecular Programming 2016/09

  10. BIOMODの紹介

    村田 智

    ひらめき☆ときめきサイエンス「DNAオリガミで遊ぼう」 2016/08

  11. Discrete DNA Reaction-Diffusion Model for Implementing Simple Cellular Automaton International-presentation

    Ibuki Kawamata, Satoru Yoshizawa, Fumi Takabatake, Ken Sugawara, Satoshi Murata

    The 15th Unconventional Computation and Natural Computation (UCNC 2016) 2016/06

  12. Size Controllable Homomultimer Made of Single DNA Origami Monomer International-presentation

    Ibuki Kawamata, Yuma Endo, Keita Abe, Takeo Uchida, Shosei Ichiseki, Satoru Akita, Shiyun Liu, Sho Aradachi, Masataka Saito, Akihiko Fukuchi, Taiyo Kikkawa, Theo Dammaretz, Shin-ichiro M. Nomura, Satoshi Murata

    IEEE-NEMS 2016/04

  13. 分子ロボティクスブース展示

    小長谷明彦, 萩谷昌己, 村田 智

    Nanotech World 2016/01/27

  14. シーケンス制御を行うDNAデバイスによる構造体のステップ動作

    石原瑛暉, 川又生吹, 村田 智

    計測自動制御学会 システム・情報部門 学術講演会 2015 (SSI2015) 2015/11/18

  15. ゲル上で連鎖的に動作し非均質パターンを形成するDNA論理回路

    細谷拓人, 川又生吹, 野村M.慎一郎, 村田 智

    計測自動制御学会 システム・情報部門 学術講演会 2015 (SSI2015) 2015/11/18

  16. ホモマルチマ-の結合数制御に向けて

    内田健央, 安部桂太, 市堰翔成, 秋田 賢, 遠藤佑真, 劉 詩韻, 荒舘 笙, 吉川太陽, 斎藤正崇, 福地成彦, 川又生吹, 村田 智

    「細胞を創る」研究会8.0 2015/11/12

  17. Traveling of gelation and solation of polymer using reaction and diffusion of DNA International-presentation

    Ibuki Kawamata, Fumi Takabatake, Satoshi Murata, Masami Hagiya

    Japanese Society for Cell Synthesis Research 8.0 2015/11

  18. Construction of self-assembled DNA nanostructures on lipid membrane surface

    Masamune Morita, Miho Yanagisawa, Shogo Hamada, Shin-ichiro Nomura, Satoshi Murata, Masahiro Takinoue

    日本生物物理学会第53回年次大会 2015/09/13

  19. CMolecular robots constructed by entrapping molecular-motors and DNA circuits into giant liposomes

    Yusuke Sato, Yuichi Hiratsuka, Ibuki Kawamata, Satoshi Murata, Shin-ichiro Nomura

    日本生物物理学会第53回年次大会 2015/09/13

  20. Toward chemically implementing simple cellular automaton by encapsulating DNA and Enzyme in hydrogel capsule

    Ibuki Kawamata, Satoru Yoshizawa, Fumi Takabatake, Ken Sugawara, Satoshi Murata

    日本生物物理学会第53回年次大会 2015/09/13

  21. Liposomes with skeleton network of self-assembled DNA gel mimicking actin cortex

    Chikako Kurokawa, Kei Fujiwara, Masamune Morita, Ibuki Kawamata, Satoshi Murata, Masahiro Takinoue, Miho Yanagisawa

    日本生物物理学会第53回年次大会 2015/09/13

  22. Electrofusion of Cell-GUV enables um-sized artificial objects transfer into live cells

    Akira C. Saito, Toshihiko Ogura, Satoshi Murata, Shin-ichiro Nomura

    日本生物物理学会第53回年次大会 2015/09/13

  23. Toward Chemically Implementing Simple Cellular Automaton by Encapsulating DNA and Enzyme in Hydrogel Capsule

    Ibuki Kawamata, Satoru Yoshizawa, Fumi Takabatake, Ken Sugawara, Satoshi Murata

    The 53rd Annual Meeting of the Biophysical Society of Japan 2015/09

  24. Encapsulated DNA and Enzyme Reaction-Diffusion Network for Simple International-presentation

    Ibuki Kawamata, Satoru Yoshizawa, Fumi Takabatake, Ken Sugawara, Satoshi Murata

    DNA Computing and Molecular Programming DNA21 2015/08/17

  25. Lipid-modified DNA rings on hydrophobic surfaces International-presentation

    Keitel Cervantes-Salguero, Yusuke Yonamine, Ibuki Kawamata, Satoshi Murata, Katsuhiko Ariga

    DNA Computing and Molecular Programming DNA21 2015/08/17

  26. Molecular information processing in micro gel beads with entrapped DNAs International-presentation

    Satoru Yoshizawa, Ibuki Kawamata, Shin-Ichiro M. Nomura, Satoshi Muarta

    DNA Computing and Molecular Programming DNA21 2015/08/17

  27. BIOMODの紹介

    村田 智

    ひらめき☆ときめきサイエンス「DNAオリガミで遊ぼう」 2015/08/07

  28. Encapsulated DNA and Enzyme Reaction-Diffusion Network for Simple Cellular Automaton International-presentation

    Ibuki Kawamata, Satoru Yoshizawa, Fumi Takabatake, Ken Sugawara, Satoshi Murata

    The 21th International Meeting on DNA Computing and Molecular Programming 2015/08

  29. DNA コンピューティングを使った時空間的ゲルゾル,ゾルゲル相転移

    川又生吹, 高畠芙美, 村田智, 萩谷昌己

    バイオ高分子シンポジウム 2015/07

  30. 分子ロボティクスブース展示

    小長谷明彦, 萩谷昌己, 村田 智

    ナノ・マイクロビジネス展/ROBOTECH 2015/04/22

  31. Designing Artificial Membrane Channel From DNA Origami International-presentation

    Kazuki Hirahara, Satoshi Murata, Shin-Ichiro M. Nomura

    FNANO 2015/04/13

  32. DNA架橋ゲルにおける時空間的なゾル-ゲル転移の反応拡散モデル

    高畠芙弥, 川又生吹, 菅原 研, 村田 智

    日本物理学会 第70回年次大会 2015/03/21

  33. 自律移動型分子アメーバの構築に向けて

    田中義明, 平塚祐一, 藤原慶, 村田智, 野村 M, 慎一郎

    細胞を創る研究会7.0 2014/11/13

  34. DNAナノ構造 ~ナノ構造,ナノデバイスから分子レベルのロボティクスへ(特別講演)

    第43回結晶成長国内会議(NCCG-43) 2014/11/07

  35. Molecular Robotics: Contributions to Science, Technology and Society International-presentation

    S. Murata, S.Douglas, N. Seeman, M. Hagiya, A.Konagaya, S.Kobayashi, H.Saito

    Molecular Robotics Symposium 2014/09/26

    More details Close

    Panel Discussion Moderator: S. Murata

  36. Hydrophobicity control of DNA nanostructures International-presentation

    Keitel Cervantes-Salguero, Ibuki Kawamata, Satoshi Murata

    DNA Computing and Molecular Programming DNA20 2014/09/22

  37. Sol-Gel Transition by Formation of DNA Cross-link using Diffusion and Reaction of Programmed Hybridization International-presentation

    Ibuki Kawamata, Satoshi Murata, Masami Hagiya

    DNA Computing and Molecular Programming DNA20 2014/09/22

  38. Introduction to Molecular Robotics: Computation to control chemical systems International-presentation

    20th International Workshop on Cellular Automata and Discrete Complex Systems (Automata2014) 2014/07/07

  39. Shape-variable monomers for reconfiguring closed molecular clusters International-presentation

    Keitel Cervantes-Salguero, Shogo Hamada, Shin-Ichiro M. Nomura, Satoshi Murata

    FOUNDATIONS OF NANOSCIENCE (FNANO2014) 2014/04/14

  40. Macro Scale Spatio-Temporal Gel-Sol Transition by Nano Scale DNA Hybridization Reaction International-presentation

    Ibuki Kawamata, Satoshi Murata, Masami Hagiya

    FOUNDATIONS OF NANOSCIENCE (FNANO2014) 2014/04/14

  41. Experiments and Analyses of DNA Lattice Nucleation on Substrate using Crystal Growth Theory International-presentation

    Atsushi Nakajima, Hitoshi Miura, Shogo Hamada, Shin-Ichiro Nomura, Satoshi Murata

    FOUNDATIONS OF NANOSCIENCE (FNANO2014) 2014/04/14

  42. DNA Hydrogel Coated Alginate Gel Beads Capable of Size Selective Loading of Single Stranded DNA International-presentation

    Takamune Suzuki, Ibuki Kawamata, Shogo Hamada, Shin-Ichiro Nomura, Satoshi Murata

    FOUNDATIONS OF NANOSCIENCE (FNANO2014) 2014/04/14

  43. Introducing Large DNA Nanostructures Into Living Cells Mediated by Cell-GUV Electrofusion International-presentation

    Akira Saito, Toshihiko Ogura, Kei Fujiwara, Satoshi Murata, Shin-Ichiro Nomura

    FOUNDATIONS OF NANOSCIENCE (FNANO2014) 2014/04/14

  44. Cell Crawler: Giant Magnetoliposome Controlled by External Rotating Magnetic Field International-presentation

    Daiki Komatsu, Akira Saito, Kei Fujiwara, Satoshi Murata, Shin-Ichiro Nomura

    FOUNDATIONS OF NANOSCIENCE (FNANO2014) 2014/04/14

  45. 分子ロボティクスへのご招待(招待講演)

    計測自動制御学会東北支部 特別講演会 2014/01/21

  46. システム論としての分子ロボティクス

    人工知能学会合同研究会 2013/11/15

  47. DNAナノエンジニアリングにおけるビジュアライゼーション

    吉澤慧, 藤原慶, 野村 M, 慎一郎, 村田智

    第76回 形の科学会 2013/11/15

  48. Toward Spatial and Temporal Gel-Sol Transition of Hydrogel Driven by DNA Hybridization Reaction

    Ibuki Kawamata, Satoshi Muarta, Masami Hagiya

    CBI学会2013年大会 -生命医薬情報学連合大会- 2013/10/28

  49. Science Communication in DNA nano-engineering

    Satoru Yoshizawa, Satoshi Muarta

    CBI学会2013年大会 -生命医薬情報学連合大会- 2013/10/28

  50. Reversible Gel-Sol Transition of DNA Gel

    Daisuke Kandatsu, Satoshi Muarta

    CBI学会2013年大会 -生命医薬情報学連合大会- 2013/10/28

  51. Self-assembly and reconfiguration of multiple-sized closed structures made of DNA origami

    Keitel Cervantes, Shogo Hamada, Shin-ichiro Nomura, Satoshi Murata

    第51回日本生物物理学会年会 2013/10/28

  52. From DNA Nano Engineering toward Molecular Robotics, Satoshi Murata International-presentation

    The 2nd International Workshop on Convergence in Condensed Matter and Nano Physics 2013/10/07

  53. Toward Gel-sol Transition of Hydrogel Driven by DNA Devices International-presentation

    Ibuki Kawamata, Sathoshi Murata, Masami Hagiya

    The 19th International Conference on DNA Computing and Molecular Programming (DNA19) 2013/09/22

  54. Coarse-grained simulation model for molecular robot design International-presentation

    Shinnosuke Tsutsui, Satoshi Murata

    The 19th International Conference on DNA Computing and Molecular Programming (DNA19) 2013/09/22

  55. 分子ロボティクス~情報と実体が一致する世界(基調講演)

    第19回 創発システムシンポジウム 2013/08/31

  56. From DNA nanotechnology to Molecular Robotics International-presentation

    France-Japan Workshop on Bioinspir​ed Methods and Applicatio​ns 2013/02/06

  57. 超分子マイクロクローラの構築

    小松 大貴, 藤原 慶, 浜田 省吾, 村田 智, 野村 M, 慎一郎

    第25回 自律分散システムシンポジウム 2013/01/25

  58. DNAナノテクノロジーと分子ロボティクス

    GRENE講座「ナノバイオコース」 2013/01/22

  59. “The Future Opened by Molecular Robotics” ~From the point of view of Molecular Robotics International-presentation

    CREATE/JSME-Tohoku Workshop "Let’s Talk about the Future of Robotics” 2012/11/22

  60. DNAナノテクノロジーと分子ロボティクス

    産学連携企業見学会(機械系) 2012/09/28

  61. Prototype molecular robots working on cellular membrane

    Yusuke Sato, Kei Fujiwara, Shogo Hamada, Satoshi Murata, Sin-ichiro Nomura, Undergrad. Sch. Eng, Tohoku Univ, JSPS. Research Fellow. Tohoku Univ, Assi Prof. Tohoku Univ, Prof. Tohoku Univ, Assoc Prof. Tohoku

    第50回日本生物物理学会年会 The 50th Annual Meeting of the BSJ 2012/09/22

  62. Artificial Panspermia by Molecular Robots

    Masahiro Endo, Kei Fujiwara, Syougo Hamada, Satoshi Murata, Shin-ichiro. M Nomura, Undergrad. Sch. Eng, Tohoku Univ, JSPS. Postdoc, Tohoku Univ, Assi Prof. Tohoku Univ, Prof. Tohoku Univ, Assoc Prof. Tohoku

    第50回日本生物物理学会年会 The 50th Annual Meeting of the BSJ 2012/09/22

  63. Adsorption of DNA ring onto Liposome

    Yumiko Kumagai, Shogo Hamada, Shin-ichiro Nomura, Satoshi Murata, Department of Bioengineering, Robotics, Graduate School of Engineering, Tohoku University, J

    第50回日本生物物理学会年会 The 50th Annual Meeting of the BSJ 2012/09/22

  64. Substrate-Assisted Self-Assembly of DNA Nanostructure on lipid bilayer

    Shogo Kudo, Shogo Hamada, Shin-ichiro Nomura, Satoshi Murata, Department of Bioengineering, Robotics, Graduate School of Engineering, Tohoku University, J

    第50回日本生物物理学会年会 The 50th Annual Meeting of the BSJ 2012/09/22

  65. Model for self-assembly of flexible DNA motifs using stacking interactions

    Keitel Cervantes-Salguero, Shogo Hamada, Satoshi Murata, Tohoku Universit

    第50回日本生物物理学会年会 The 50th Annual Meeting of the BSJ 2012/09/22

  66. Self-assembly of DNA tiles

    International Crystal Growth School in Sendai (ICGS2) 2012/07/25

  67. Model of DNA Adsorption for Substrate-Assisted Self-Assembly of DNA Nanostructure International-presentation

    Shogo Kudo, Shogo Hamada, Satoshi Murata

    Foundations of Nanoscience Self-Assembly Architectures and Devices 2012/04/16

  68. DNAナノ構造のためのモチーフ設計

    日本化学会 2012/03/28

  69. DNAナノエンジニアリングと学生教育 International-presentation

    GCOE ナノ医工学 公開シンポジウム 2012/03/05

  70. DNAナノ構造とその応用(招待講演)

    日本レーザー学会 2012/01/31

  71. DNAナノテクノロジーと分子ロボティクス

    精密工学会東北支部講演会 2011/06/03

  72. 分子計算から分子ロボティクスへ

    人工知能学会全国大会 2011/06/01

  73. DNAナノ構造体形成実験とその結晶成長学的考察

    上野雄也, 三浦均, 浜田省吾, 村田智, 塚本勝男

    日本地球惑星科学連合2011年大会 2011/05/22

  74. Theory of Substrate‐Assisted Self‐Assembly of DNA Nanostructures International-presentation

    Shogo Hamada, Satoshi Murata

    FNANO 2011 2011/04/11

  75. DNA Nanoengineering toward Molecular Robotics International-presentation

    International Symposium on Engineering Neo-Biomimetics II 2011/02/25

  76. DNA分子設計による分子機械システムの構築

    北陸先端科学技術大学院大大学マテリアルサイエンス研究科セミナー 2010/12/10

  77. Session 3:ありえた生命を創る

    細胞を創る研究会 3.0 2010/11/12

  78. Extending robotics to the molecular scale International-presentation

    InCoB 2010 2010/09/26

  79. DNAナノ構造の基板成長メカニズム

    浜田省吾, 村田

    分子ロボティクス研究会 2010/09/23

  80. DNAナノテクノロジーから分子ロボティクスへ

    社会的知能発生学研究会 2010/08/21

  81. Toward Self-Organization of DNA Nanorings Using Non-specific Interactions International-presentation

    Shogo Hamada, Satoshi Murata

    FNANO 2010 2010/04/26

  82. DNAマイクロカプセルの開発

    堀内浩太, 村田智

    第22回自律分散システムシンポジウム 2010/01/30

  83. New Motifs for DNA Nanostructures International-presentation

    Satoshi Nishimoto, Shogo Hamada

    Materials for Advanced Technologies 2009(ICMAT 2009) 2009/06

  84. DNA分子でつくるプログラムナノ構造体

    日本物理学会第64回年次大会 2009/03

  85. ネットワーク生成モデルと生物のかたちづくり

    日本植物生理学会年会 2009/03

  86. DNA分子のプログラマブルな結晶化

    学習院大学計算機センター特別プロジェクト「結晶成長の数理」第3回研究会 2008/12

  87. DNAナノ構造のアルゴリズミック結晶成長

    結晶成長国内会議NCCG-38 2008/11

  88. Self-reconfigurable robots International-presentation

    Physics Department Special Seminar, SKKU 2008/10

  89. Self-Assembly of DNA Nanostructures International-presentation

    SAINT, SKKU 2008/10

  90. Computing wih DNA tiling

    International Workshop on Natural Computing (IWNC 2008) 2008/09

  91. DNAタイルとその周辺

    第3回バイオ関連化学合同シンポジウム生体機能関連シンポジウム 若手フォーラム 2008/09

  92. DNAタイルの自己組織化

    日本結晶成長学会 第33回結晶成長討論会 2008/09

  93. Self-Assembly of DNA Tiles-Measurement, Simulation and Error Suppression

    Bionano Symposium 2008/05

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Industrial Property Rights 3

  1. 三次元可動構造物の自動組立体

    村田智

    Property Type: Patent

  2. 三次元構造物の自動組立体

    Property Type: Patent

  3. 機器構成用多機能モジュール

    村田智

    Property Type: Patent

Research Projects 21

  1. Construction of Minimal Artificial Brain by Molecular Device Integration and its Social Innovation

    Offer Organization: Japan Society for the Promotion of Science

    System: Grants-in-Aid for Scientific Research

    Category: Grant-in-Aid for Transformative Research Areas (A)

    Institution: The University of Tokyo

    2020/11/19 - 2025/03/31

  2. Management / Public Relations / International Activity Support of Molecular Cybernetics

    Offer Organization: Japan Society for the Promotion of Science

    System: Grants-in-Aid for Scientific Research

    Category: Grant-in-Aid for Transformative Research Areas (A)

    Institution: Tohoku University

    2020/11/19 - 2025/03/31

  3. Molecular Cybernetics -Development of Minimal Artificial Brain by the Power of Chemistry

    Offer Organization: Japan Society for the Promotion of Science

    System: Grants-in-Aid for Scientific Research Grant-in-Aid for Transformative Research Areas (A)

    Category: Grant-in-Aid for Transformative Research Areas (A)

    2020/11/19 - 2025/03/31

  4. New development of spatio-temporal molecular programming

    Offer Organization: Japan Society for the Promotion of Science

    System: Grants-in-Aid for Scientific Research Grant-in-Aid for Scientific Research (A)

    Category: Grant-in-Aid for Scientific Research (A)

    Institution: Tohoku University

    2020/04/01 - 2025/03/31

  5. かたちとやわらかさの織り成すセルフアセンブリシステムの研究

    村田 智

    Offer Organization: 日本学術振興会

    System: 科学研究費助成事業 挑戦的研究(萌芽)

    Category: 挑戦的研究(萌芽)

    Institution: 東北大学

    2020/07/30 - 2023/03/31

    More details Close

    本研究では,かたち・結合性・やわらかさを自在に設定することができるモジュールを開発し,様々な条件下でアセンブリ実験を行うことによりセルフアセンブリの普遍的設計原理を探ることを目的としている. 2年目となるR3年度は,これまでの実験で剛性不足が問題となっていた7角形の柔軟閉リンク構造の断面形状をより接地面積が大きくなるように再設計し,あらためてセルフアセンブリ条件の最適化を行った.その結果,モジュール単体は高い収率で得られることが分かった.このモジュールを平面基板上で集合させるため,脂質2重膜をマイカ基板上に張ったものを試みたが,よい結果が得られたなかったため,マイカ基板上での自己集合をさせることにした.マイカ基板とDNAの吸着力を調整するためにマグネシウム塩およびナトリウム塩をさまざまな濃度で含むバッファー溶液を試みたが,こちらも自己集合が起こる条件を見出すことができなかった. そこで,これまでの7角形モジュールとは別に,4角形モジュールをあらかじめ9個格子状に集合させたDNAオリガミ構造体を設計した.この構造ではモジュールごとの4通りの形状変化(非拘束,右に変形,左に変形,中立(直角))を外部から加えたDNAストランドによる鎖置換反応を用いて制御でき,さらにモジュール間の連結を通して格子構造全体の形状を間接的に制御することができる.このモジュールを用いた予備実験により,幾何学的な拘束条件によりできやすい形状とできにくい形状があることが判明した.また,形状の変化を定量的に評価する方法についても検討をはじめた.

  6. Development of Artificial Membrane System by DNA Membrane Motif

    Murata Satoshi

    Offer Organization: Japan Society for the Promotion of Science

    System: Grants-in-Aid for Scientific Research Grant-in-Aid for Challenging Research (Exploratory)

    Category: Grant-in-Aid for Challenging Research (Exploratory)

    Institution: Tohoku University

    2018/06/29 - 2020/03/31

    More details Close

    Aiming at constructing artificial membrane with synthesized DNA , we designed a DNA membrane motif that dynamically binds via a kissing loop similar to the flow mosaic model. D-shaped and O-shaped motifs with a hard double-stranded stem and a soft single-stranded loop were prepared to evaluate the loop-loop interaction between membrane motifs. Although variations of motifs and various buffer condition were tested, the expected aggregation was not observed. We investigated a method to increase the formation rate of the structure by confining the motif in the closed space. As the specimen, we adopted two types of membranous DNA origami structures, which are known to be quickly formed in various conditions. As the result it was confirmed that the micro space is advantageous for the reliable formation of the structure.

  7. 分子ロボットの行動プログラミングのための制御系構築 Competitive

    System: Grant-in-Aid for Scientific Research

    2015/04 - 2019/03

  8. Development of Electric Field Driven Digital Molecular Devices Competitive

    Satoshi Murata, KAWAMATA Ibuki, TSUZAWA Masaru, Keitel Cervantes-Salguero

    Offer Organization: Japan Society for the Promotion of Science

    System: Grants-in-Aid for Scientific Research Grant-in-Aid for Challenging Exploratory Research

    Category: Grant-in-Aid for Challenging Exploratory Research

    Institution: Tohoku University

    2015/04/01 - 2017/03/31

    More details Close

    Aiming at developing (1) a molecular moving body digitally stepping in one direction in response to an applied electric field and (2) molecular computing elements able to perform logic operation in response to an applied electric field, electric response properties of DNA is examined. (1) Using DNA Origami method, we developed a rotating vehicle with six feet with slight asymmetry and also developed an experimental system capable of single molecule observation under horizontal electric field. (2) An experimental system in which a DNA strand modified with gold nanoparticles is peeled off by applying an electric field is developed, and quantitative evaluation of the dehybridization behavior under electric field was conducted.

  9. Support and publicity of molecular robotics

    Hagiya Masami, MURATA Satoshi, SAITO Hirohide, KOBAYASHI Satoshi, FUJIMOTO Kenzo

    Offer Organization: Japan Society for the Promotion of Science

    System: Grants-in-Aid for Scientific Research

    Category: Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)

    Institution: The University of Tokyo

    2012/06/28 - 2017/03/31

    More details Close

    The area meeting attended by all the area members was held 9 times. The open symposium was held once a year and the final one is planned in July 2017. Research workshops were held 19 times. The area also sponsored the open symposium in two international conferences. The home page (http://www.molbot.org)continued submitting information about the area, and the news letter was published four times a year. The area supported the international biomolecular design competition for undergraduate students by sponsoring the domestic preliminary contest five times and writing a textbook, which is planned to be translated to English by the international committee. The workshop for high school students (hirameki-tokimeki science) titled “Make and play with DNA origami” was held twice. A booth was put four times in exhibitions for companies (MEMS and Nano-Micro Business).

  10. 構造化ゲルと化学反応場の協働による運動創発(新学術領域「分子ロボティクス」計画研究) Competitive

    System: Grant-in-Aid for Scientific Research

    2012/07 - 2017/03

  11. DNAナノエンジニアリングによる分子ロボティクスの創成(基盤研究(S)) Competitive

    System: Grant-in-Aid for Scientific Research

    2011/04 - 2016/03

  12. Theory of Aogorithms to Analyse Chemical Reaction Systems for Molecular Robotics

    KOBAYASHI Satoshi, YAMASHITA Masafumi, MURATA Satoshi, SUZUKI Yasuhiro, KOMIYA Ken, KUZUYA Akinori, TAKINOUE Masahiro

    Offer Organization: Japan Society for the Promotion of Science

    System: Grants-in-Aid for Scientific Research

    Category: Grant-in-Aid for Scientific Research (C)

    Institution: The University of Electro-Communications

    2010 - 2012

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    We established a theory of efficiently computing an equilibrium of a complex chemical reaction system, where molecules interact in various ways to produce a large set of assemblies. In this theory, we used hypergraph theory and optimization theory in a unified manner, and succeeded in the recuction of the number of variables which are needed for the computation of chemical equilibrium. The theory was applied to the computation of equilibrium of intearacting nucleic ascid strands. It was also extendedly applied to the approximate and efficient simulation of kinetic folding of an RNA molecule.

  13. DNA分子設計による分子機械システムの構築

    村田 智

    Offer Organization: 日本学術振興会

    System: 科学研究費助成事業

    Category: 基盤研究(A)

    Institution: 東京工業大学

    2010 - 2010

  14. Fabrication of innovative functional assemblies using programmed self-organizational processes

    ISHIKAWA Masamichi, MURATA Satoshi, KAJIKAWA Kotaro, KITAMOTO Yoshitaka

    Offer Organization: Japan Society for the Promotion of Science

    System: Grants-in-Aid for Scientific Research

    Category: Grant-in-Aid for Scientific Research on Innovative Areas (Research a proposed research project)

    Institution: Tokyo Institute of Technology

    2008 - 2010

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    Fabrication processes of formulating large-areal and defect-free assemblies for new functional materials were constructed based on programmed DNA self-organization and colloidal crystal theory. It was clearly presented that charged particles, e.g. colloidal particles and DNA assemblies, were self-organized into the crystalline structures of high perfection and large-area on charged substrates, such as glass and mica. The newly found mechanism was applied to fabricate thin-film photonic materials and meta-materials with noble optical properties.

  15. Mechanism of High-Precision Molecular Computing and its Evaluation

    MURATA Satoshi, FUJIMOTO Kenzo, FUJII Teruo, NOJIMA Takahiko

    Offer Organization: Japan Society for the Promotion of Science

    System: Grants-in-Aid for Scientific Research

    Category: Grant-in-Aid for Scientific Research (A)

    Institution: Tokyo Institute of Technology

    2007 - 2009

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    In this project, aiming at realization of high-precision molecular computing, we have investigated several aspects of molecular computing system based on algorithmic self-assembly of DNA tile. 1) A simulation model capable to explain details of self-assembly process of DNA tile has been developed. 2) We found a new phenomenon called substrate-assisted self-assembly, which enables us to make a large 2D crystal on substrate surface with less error compared with conventional assembly method in free solution. We have succeeded in algorithmic self-assembly using two types of T-motif tile and applied it to fabrication of protein array. Artificial base called C^<NVK> is developed, and its usefulness to stabilize DNA nanostructures and to extend the varieties of DNA nanostructure is verified. Stepwise DNA self-assembly by using micro-fluidic device is also developed, and feasibility of bulk evaluation of DNA tile nanostructure with fluorescent measurement has been shown by the method.

  16. メゾスケールのメカトロニック自己集積素子の開発

    村田 智

    Offer Organization: 日本学術振興会

    System: 科学研究費助成事業

    Category: 萌芽研究

    Institution: 東京工業大学

    2007 - 2008

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    これまでのアルゴリズミック・セルフアセンブリの研究において、あまり考慮されてこなかった素子のかたちに着目したモデル構築および実験に取り組んだ。その結果,かたちによる特異的な結合の表現は、スケールによらない普遍的な設計手法である可能性を指摘するだけでなく、エラーが埋め込まれにくくなることを示した。さらに、“かたちのちから"と称するこの原理の実証として、前年度に製作したプログラム自己集積実験を行うため加振周波数、方向を制御できる加振台により菱形素子のセルフアセンブリ実験を行い,ビデオ解析を行った.具体的には,素子の入出力および左右の区別を素子の形状により実装する方法を提案し、ミリメートルスケールの試作素子による実験により、アセンブリ素子の“かたち"がその性能に大きな影響を与えることを確認した。

  17. DNAタイルの高信頼セルフアセンブリ技術の研究

    村田 智, 柳田 保子

    Offer Organization: 日本学術振興会

    System: 科学研究費助成事業

    Category: 特定領域研究

    Institution: 東京工業大学

    2005 - 2006

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    1)DNAタイルのセルフアセンブリの高信頼化 前年度に引き続きDNAタイルセルフアセンブリ体におけるエラー率の定量化に取り組んだ.DNAオリガミを結晶核としてリボン上の構造を生成し,その上にXOR演算タイルを成長させた.これをAFM観察し,エラー率の精密な測定を行った.また,タイル種ごとの濃度,アニールによる温度変化などの条件を考慮したシミュレーションシステムを構築し,リボンアセンブリにおける実測値と予想値を比較して良好な一致を見た.エラー抑制手法としては,SST(single stranded tile)と呼ばれるより単純なDNAモチーフに対してLTMが適用可能であることをしめした.また,マイクロ流体デバイスを用いたDNAタイルのステップワイズアセンブリ実験に成功し,送液順序によりDNAセルフアセンブリ結晶の階層構造が制御可能であることを蛍光観察実験により実証した. 2)DNA相互作用分子による機能発現 2層化DNAタイル構造上にナノ微粒子を位置特異的に固定化するための基礎研究を行い、ビオチン化DNA上にアビジン修飾ナノ微粒子を周期的に配置したナノ構造体の長鎖化に成功した。また鋳型DNAとRecAタンパク質および一本鎖DNAによる塩基配列特異的複合体形成に適した塩基配列の決定を行なった。

  18. Adaptive morphogenesis of a self-reconfigurable robot

    KUROKAWA Haruhisa, MURATA Satoshi, TOMITA Kohji, YOSHIDA Eiichi, KAMIMURA Akiya

    Offer Organization: Japan Society for the Promotion of Science

    System: Grants-in-Aid for Scientific Research

    Category: Grant-in-Aid for Scientific Research (B)

    Institution: National Institute of Advanced Industrial Science and Technology (AIST)

    2004 - 2006

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    Regarding locomotion control in various robotic forms, we studied a method based on a neural oscillator network (CPG network). In this project, we extended the method by additional integration compensation. Adaptation capability of the method was evaluated by experiments, in which robots in various forms adapted to variation of external load or ground friction. In addition, a method was proposed and tested by experiments, that form change was initiated by excess load detected by the integration term. Regarding selection of forms, an offline method called rapidly exploring random trees was applied and verified by numerical simulations. Experiments of automatic metamorphosis were also conducted by using either proximity sensors, a gravity sensor, or an onboard camera. Regarding amoeba-like motion, we have designed 1-3 dimensional structures and basic self-reconfiguration motions. Experiments of linearly traveling motion by an asynchronous distributed control were successful by maximum 24 modules. A motion traveling a size-known step was made by centralized control. Future works include the same motion by a decentralized control and adaptation to unknown environment.

  19. Self-assembly and Self-repair System of Membrane-Truss Complex for Space Solar Power Plant

    MURATA Satoshi, FURUYA Hiroshi, TAKADAMA Keiki

    Offer Organization: Japan Society for the Promotion of Science

    System: Grants-in-Aid for Scientific Research

    Category: Grant-in-Aid for Scientific Research (B)

    Institution: Tokyo Institute of Technology

    2004 - 2006

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    There have been very few researches dealing with how to assemble huge space structures in kilometer order. In this project, we have conducted feasibility study on a method of constructing and maintaining large-scale space structure aiming at future application for Space Solar Power Satellite (SSPS). There are three subthemes in our project : (1) Self-assembly system design, (2) Structural module design and (3) Planning system design. In (1), we have designed new deployable tensegrity structure which can be stored in compact hexagonal shell suitable for robot handling. The scenario of deployment assuming Japans module in International space station is also studied. In (2), several different design of inflatable structural members were proposed. Mechanical behavior of inflatable tubes and deployable (folded) membranes were evaluated in detail. Structural composite of inflatable tube and deployable membranes were also investigated. In (3), Algorithms for self-assembly and self-repair and failure detection algorithms were investigated.

  20. 形態変化する分子を用いた並行計算と分散計算

    萩谷 昌己, 横山 茂之, 陶山 明, 浅沼 浩之, 藤井 輝夫, ROSE John, 村田 智, 岩崎 裕, 吉信 達夫

    Offer Organization: 日本学術振興会

    System: 科学研究費助成事業

    Category: 特定領域研究

    Institution: 東京大学

    2002 - 2006

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    形態変化するDNA分子の設計方法:萩谷は、連続ヘアピンからなる分子マシンに関して、ヘアピンの配列を変化させたときに、3連続ヘアピンから成る分子マシンの挙動がどのように変化するかを調べた。分子マシンの光制御を目指した光機能性超分子の構築:浅沼は、これまでとは逆に「cis-体で二重鎖形成、trans-体で解離」というスイッチングが可能な光応答性DNAの設計と実現に成功した。ヘアピンとバルジによる並行計算:萩谷は、Whiplash PCRの熱力学的な解析と、状態遷移の効率化(Displacement WPCR)を行った。レトロウィルスによる並行計算:陶山は、二つの正帰還と一つの負帰還反応から構成されたオシレータをRTRACの基本反応を用いて構築した。シミュレーションにより発振可能な条件が存在することを確かめた後、実装を進めた。翻訳系による並行計算:横山は、翻訳システムを利用した「オートマトン」を動物細胞(培養細胞)内でも構築することを目標に、非天然型アミノ酸が細胞に与えられた場合にのみ活性化され、サプレッサーtRNAにアミノ酸を結合するような酵素(アミノアシルtRNA合成酵素)を用いることにより、サプレションを制御する機構を構築した。DNA Walker:萩谷は、DNA Walkerの構築に向けて、温度、pH、光の三種類の入力によって駆動する分子マシンに関する予備実験を行った。特に、これらの三種類の入力の独立性について調べた。マイクロチップのための微量液体制御機構の開発:藤井は、液滴操作に必要な周辺技術等の整備を進め、オンデマンド式で液滴の生成・合一の操作が可能にした。また、本技術を用いてDNAとPNAのハイブリダイゼーション反応と電気泳動による反応産物の分離操作をデバイス上で実現した

  21. 可変形態移動機構のコンプライアンス制御に関する研究

    村田 智

    Offer Organization: 日本学術振興会

    System: 科学研究費助成事業

    Category: 萌芽研究

    Institution: 東京工業大学

    2004 - 2005

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    前年度に製作したモジュラークローラロボットに対する剛性分布制御に対し,閉リンク機構の運動学・動力学を解くことなく,剛性の目標値を直接指示する剛性分布制御の最適化アルゴリズムを開発した.この方法は,走行時,停止時などの異なる要求に対し,各関節の目標剛性値を新たに考案した集団的最急降下法により最適化するものである.動力学シミュレータをもちいた最適化シミュレーションにより,きわめて滑らかで効率の良い走行のための剛性分布および急峻な停止運動を実現する剛性分布などを求めることができた. また,ロボットの可変剛性関節として,前年度は板バネの支持点を制御する方式の関節を設計試作したが,擦動摩擦が多い,特性の予測が難しい,剛性の可変範囲がせまい,などの欠点があったため,これを克服するべく,別の方式の開発をおこなった.すなわち,ヒトが拮抗筋構造により剛性制御を可能にしていることに着目し,非線形弾性特性を持つ機構系を二つ用いて,それらを直接拮抗させ接続することにより,男性可変な関節を設計製作した.非線形弾性特性を持つ要素が二つあればよいため,原理的には容易に可変剛性関節を構成できる.しかしながら設定可能な剛性範囲を幅広く取るためには,非線形性が強い弾性要素が必要であり,単一の機械要素(特殊なバネなど)によってこれを実現することは難しい.実際にこれまでにもさまざまな研究がなされているが,試作レベルを超えることができないのが現状である.そこで本研究では,非円形歯車の利用によりこの問題の解決を図る.非円形歯車とはピッチ曲線を任意の曲線とすることで,簡潔な機構で任意の不等速回転を得ることのできる要素である.これを任意の弾性要素の変位の非線形伝達に利用することで,小型で摩擦が少なくかつ幅広い特性変化範囲を持つ非線形弾性要素を作り出すことができた.

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Works 8

  1. 第3回 青葉山コンサート 企画主催

    2016/12 -

    Type: Artistic work

  2. 第2回 青葉山コンサート 企画主催

    2016/10 -

    Type: Artistic work

  3. 第1回 青葉山コンサート 企画主催

    2016/06 -

    Type: Artistic work

  4. 青葉山アンサンブルの演奏(ニューイヤーミニコンサート)

    機械系 2015/01/13 -

    Type: Artistic work

  5. 青葉山カルテットの演奏

    BOOOK 生協カフェ 2013/03/07 -

    Type: Artistic work

  6. 青葉山カルテットの演奏

    BOOOK 生協カフェ 2012/10/25 -

    Type: Artistic work

  7. 青葉山カルテットの演奏

    BOOOK 生協カフェ 2012/05/25 -

    Type: Artistic work

  8. 青葉山カルテットのクリスマス演奏

    生協食堂(あおば食堂) 2011/12/26 -

    Type: Artistic work

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Social Activities 8

  1. 小金井中学校における模擬授業

    2013/01/29 - 2013/01/30

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    DNAナノテクノロジーに関する模擬授業

  2. 仙台三高での出前講義

    2015/05/29 -

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    出前講義「分子でロボットをつくる~分子レベルからのものづくり革命」 +工学部紹介

  3. 国際生体分子コンペティション~日本3チームそろって受賞

    2011/12/02 -

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    第1回国際生体分子コンペティション(ボストン,ハーバード大学主催)において,東北大学チームを含む日本から参加した3チームがいずれも入賞した.(東北大チームは金賞)

  4. 宮崎大学TLO 産学連携講演会

    2011/12/01 -

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    特別講演「DNAナノテクノロジーへの招待 ~分子サイズのロボットを創る」を行った.

  5. 分子によるナノのものづくり - 「BIOMOD 2011 日本チーム中間発表会」

    2011/08/29 -

  6. もはやSFの世界! 国際分子ロボコンに東北大の学生チームが参加

    2011/08/23 -

  7. 泉高校における出前講義

    2011/05/27 -

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    泉高校における出前講義(仙台市)

  8. 本荘高校における出前講義

    2010/07/08 -

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    本荘高校における出前講義(秋田県)

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Other 4

  1. 新世紀世界の成長焦点に築くナノ医工学拠点

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    事業推進者

  2. かたちデザイン機能辞典(丸善)

  3. Development of Metallized DNA Nanodevice

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    Development of Metallized DNA Nanodevice with SKKU (Korea)

  4. DNAナノテクに関する共同研究

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    DNAナノテクに関する共同研究