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博士(情報科学)(東北大学)
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修士(情報科学)(東北大学)
所属学協会 1
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日本バイオインフォマティクス学会
研究分野 2
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ライフサイエンス / システムゲノム科学 /
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情報通信 / 生命、健康、医療情報学 /
論文 48
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jMorp: Japanese Multi-Omics Reference Panel update report 2023. 国際誌
Shu Tadaka, Junko Kawashima, Eiji Hishinuma, Sakae Saito, Yasunobu Okamura, Akihito Otsuki, Kaname Kojima, Shohei Komaki, Yuichi Aoki, Takanari Kanno, Daisuke Saigusa, Jin Inoue, Matsuyuki Shirota, Jun Takayama, Fumiki Katsuoka, Atsushi Shimizu, Gen Tamiya, Ritsuko Shimizu, Masahiro Hiratsuka, Ikuko N Motoike, Seizo Koshiba, Makoto Sasaki, Masayuki Yamamoto, Kengo Kinoshita
Nucleic acids research 2023年11月1日
DOI: 10.1093/nar/gkad978
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Functional Characterization of 29 Cytochrome P450 4F2 Variants Identified in a Population of 8,380 Japanese Subjects and Assessment of Arachidonic Acid ω-Hydroxylation. 国際誌
Yu Sato, Eiji Hishinuma, Shuki Yamazaki, Akiko Ueda, Masaki Kumondai, Sakae Saito, Shu Tadaka, Kengo Kinoshita, Tomoki Nakayoshi, Akifumi Oda, Masamitsu Maekawa, Nariyasu Mano, Noriyasu Hirasawa, Masahiro Hiratsuka
Drug metabolism and disposition: the biological fate of chemicals 2023年9月29日
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Functional characterization of 12 dihydropyrimidinase allelic variants in Japanese individuals for the prediction of 5-fluorouracil treatment-related toxicity. 国際誌
Eiji Hishinuma, Yoko Narita, Evelyn Marie Gutiérrez Rico, Akiko Ueda, Kai Obuchi, Yoshikazu Tanaka, Sakae Saito, Shu Tadaka, Kengo Kinoshita, Masamitsu Maekawa, Nariyasu Mano, Tomoki Nakayoshi, Akifumi Oda, Noriyasu Hirasawa, Masahiro Hiratsuka
Drug metabolism and disposition: the biological fate of chemicals 51 (2) 165-173 2022年11月22日
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遺伝・生活習慣が日本人の血中代謝プロファイルに与える影響の解析
小柴 生造, 元池 育子, 井上 仁, 菱沼 英史, 青木 裕一, 櫻井 美由紀, 佐藤 允治, 七谷 圭, 田高 周, 城田 松之, 木下 賢吾, 山本 雅之
日本生化学会大会プログラム・講演要旨集 95回 1T17e-02 2022年11月
出版者・発行元:(公社)日本生化学会 -
Pathological variants in genes associated with disorders of sex development and central causes of hypogonadism in a whole-genome reference panel of 8380 Japanese individuals. 国際誌
Naomi Shiga, Yumi Yamaguchi-Kabata, Saori Igeta, Jun Yasuda, Shu Tadaka, Takamichi Minato, Zen Watanabe, Junko Kanno, Gen Tamiya, Nobuo Fuse, Kengo Kinoshita, Shigeo Kure, Akiko Kondo, Masahito Tachibana, Masayuki Yamamoto, Nobuo Yaegashi, Junichi Sugawara
Human genome variation 9 (1) 34-34 2022年9月28日
DOI: 10.1038/s41439-022-00213-w
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Construction of a trio-based structural variation panel utilizing activated T lymphocytes and long-read sequencing technology. 国際誌
Akihito Otsuki, Yasunobu Okamura, Noriko Ishida, Shu Tadaka, Jun Takayama, Kazuki Kumada, Junko Kawashima, Keiko Taguchi, Naoko Minegishi, Shinichi Kuriyama, Gen Tamiya, Kengo Kinoshita, Fumiki Katsuoka, Masayuki Yamamoto
Communications biology 5 (1) 991-991 2022年9月20日
DOI: 10.1038/s42003-022-03953-1
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A Pilot Study for Return of Individual Pharmacogenomic Results to Population-Based Cohort Study Participants. 査読有り
Kinuko Ohneda, Masahiro Hiratsuka, Hiroshi Kawame, Fuji Nagami, Yoichi Suzuki, Kichiya Suzuki, Akira Uruno, Mika Sakurai-Yageta, Yohei Hamanaka, Makiko Taira, Soichi Ogishima, Shinichi Kuriyama, Atsushi Hozawa, Hiroaki Tomita, Naoko Minegishi, Junichi Sugawara, Inaho Danjoh, Tomohiro Nakamura, Tomoko Kobayashi, Yumi Yamaguchi-Kabata, Shu Tadaka, Taku Obara, Eiji Hishimuma, Nariyasu Mano, Masaki Matsuura, Yuji Sato, Masateru Nakasone, Yohei Honkura, Jun Suzuki, Yukio Katori, Yoichi Kakuta, Atsushi Masamune, Yoko Aoki, Masaharu Nakayama, Shigeo Kure, Kengo Kinoshita, Nobuo Fuse, Masayuki Yamamoto
JMA journal 5 (2) 177-189 2022年4月15日
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Importance of Rare DPYD Genetic Polymorphisms for 5-Fluorouracil Therapy in the Japanese Population. 国際誌
Eiji Hishinuma, Yoko Narita, Kai Obuchi, Akiko Ueda, Sakae Saito, Shu Tadaka, Kengo Kinoshita, Masamitsu Maekawa, Nariyasu Mano, Noriyasu Hirasawa, Masahiro Hiratsuka
Frontiers in pharmacology 13 930470-930470 2022年
DOI: 10.3389/fphar.2022.930470
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dbTMM: an integrated database of large-scale cohort, genome and clinical data for the Tohoku Medical Megabank Project. 国際誌
Soichi Ogishima, Satoshi Nagaie, Satoshi Mizuno, Ryosuke Ishiwata, Keita Iida, Kazuro Shimokawa, Takako Takai-Igarashi, Naoki Nakamura, Sachiko Nagase, Tomohiro Nakamura, Naho Tsuchiya, Naoki Nakaya, Keiko Murakami, Fumihiko Ueno, Tomomi Onuma, Mami Ishikuro, Taku Obara, Shunji Mugikura, Hiroaki Tomita, Akira Uruno, Tomoko Kobayashi, Akito Tsuboi, Shu Tadaka, Fumiki Katsuoka, Akira Narita, Mika Sakurai, Satoshi Makino, Gen Tamiya, Yuichi Aoki, Ritsuko Shimizu, Ikuko N Motoike, Seizo Koshiba, Naoko Minegishi, Kazuki Kumada, Takahiro Nobukuni, Kichiya Suzuki, Inaho Danjoh, Fuji Nagami, Kozo Tanno, Hideki Ohmomo, Koichi Asahi, Atsushi Shimizu, Atsushi Hozawa, Shinichi Kuriyama, Nobuo Fuse, Teiji Tominaga, Shigeo Kure, Nobuo Yaegashi, Kengo Kinoshita, Makoto Sasaki, Hiroshi Tanaka, Masayuki Yamamoto
Human genome variation 8 (1) 44-44 2021年12月10日
DOI: 10.1038/s41439-021-00175-5
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Genetic loci for lung function in Japanese adults with adjustment for exhaled nitric oxide levels as airway inflammation indicator
Mitsuhiro Yamada, Ikuko N. Motoike, Kaname Kojima, Nobuo Fuse, Atsushi Hozawa, Shinichi Kuriyama, Fumiki Katsuoka, Shu Tadaka, Matsuyuki Shirota, Miyuki Sakurai, Tomohiro Nakamura, Yohei Hamanaka, Kichiya Suzuki, Junichi Sugawara, Soichi Ogishima, Akira Uruno, Eiichi N. Kodama, Naoya Fujino, Tadahisa Numakura, Tomohiro Ichikawa, Ayumi Mitsune, Takashi Ohe, Kengo Kinoshita, Masakazu Ichinose, Hisatoshi Sugiura, Masayuki Yamamoto
Communications Biology 4 (1) 2021年12月
出版者・発行元:Springer Science and Business Media LLCDOI: 10.1038/s42003-021-02813-8
eISSN:2399-3642
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代謝プロファイルに影響を与える遺伝要因の網羅的解析
小柴 生造, 元池 育子, 三枝 大輔, 井上 仁, 菱沼 英史, 青木 裕一, 田高 周, 城田 松之, 木下 賢吾, 山本 雅之
日本生化学会大会プログラム・講演要旨集 94回 [P-837] 2021年11月
出版者・発行元:(公社)日本生化学会 -
Comparison of Kit-Based Metabolomics with Other Methodologies in a Large Cohort, towards Establishing Reference Values
Daisuke Saigusa, Eiji Hishinuma, Naomi Matsukawa, Masatomo Takahashi, Jin Inoue, Shu Tadaka, Ikuko N. Motoike, Atsushi Hozawa, Yoshihiro Izumi, Takeshi Bamba, Kengo Kinoshita, Kim Ekroos, Seizo Koshiba, Masayuki Yamamoto
Metabolites 11 (10) 652-652 2021年9月24日
出版者・発行元:MDPI AGeISSN:2218-1989
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Functional Characterization of 21 Rare Allelic CYP1A2 Variants Identified in a Population of 4773 Japanese Individuals by Assessing Phenacetin O-Deethylation
Masaki Kumondai, Evelyn Gutiérrez Rico, Eiji Hishinuma, Yuya Nakanishi, Shuki Yamazaki, Akiko Ueda, Sakae Saito, Shu Tadaka, Kengo Kinoshita, Daisuke Saigusa, Tomoki Nakayoshi, Akifumi Oda, Noriyasu Hirasawa, Masahiro Hiratsuka
Journal of Personalized Medicine 11 (8) 690-690 2021年7月22日
出版者・発行元:MDPI AGDOI: 10.3390/jpm11080690
eISSN:2075-4426
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Japonica Array NEO with increased genome-wide coverage and abundant disease risk SNPs
Mika Sakurai-Yageta, Kazuki Kumada, Chinatsu Gocho, Satoshi Makino, Akira Uruno, Shu Tadaka, Ikuko N Motoike, Masae Kimura, Shin Ito, Akihito Otsuki, Akira Narita, Hisaaki Kudo, Yuichi Aoki, Inaho Danjoh, Jun Yasuda, Hiroshi Kawame, Naoko Minegishi, Seizo Koshiba, Nobuo Fuse, Gen Tamiya, Masayuki Yamamoto, Kengo Kinoshita
The Journal of Biochemistry 2021年5月13日
出版者・発行元:Oxford University Press (OUP)DOI: 10.1093/jb/mvab060
ISSN:0021-924X
eISSN:1756-2651
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Functional Characterization of 40 CYP3A4 Variants by Assessing Midazolam 1′-Hydroxylation and Testosterone 6β-Hydroxylation
Masaki Kumondai, Evelyn Marie Gutiérrez Rico, Eiji Hishinuma, Akiko Ueda, Sakae Saito, Daisuke Saigusa, Shu Tadaka, Kengo Kinoshita, Tomoki Nakayoshi, Akifumi Oda, Ai Abe, Masamitsu Maekawa, Nariyasu Mano, Noriyasu Hirasawa, Masahiro Hiratsuka
Drug Metabolism and Disposition 49 (3) 212-220 2021年3月
出版者・発行元:American Society for Pharmacology & Experimental Therapeutics (ASPET)ISSN:0090-9556
eISSN:1521-009X
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Functional Assessment of 12 Rare Allelic CYP2C9 Variants Identified in a Population of 4773 Japanese Individuals. 国際誌
Masaki Kumondai, Akio Ito, Evelyn Marie Gutiérrez Rico, Eiji Hishinuma, Akiko Ueda, Sakae Saito, Tomoki Nakayoshi, Akifumi Oda, Shu Tadaka, Kengo Kinoshita, Masamitsu Maekawa, Nariyasu Mano, Noriyasu Hirasawa, Masahiro Hiratsuka
Journal of personalized medicine 11 (2) 2021年2月2日
DOI: 10.3390/jpm11020094
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Publisher Correction: Enhancer remodeling promotes tumor-initiating activity in NRF2-activated non-small cell lung cancers. 国際誌
Keito Okazaki, Hayato Anzawa, Zun Liu, Nao Ota, Hiroshi Kitamura, Yoshiaki Onodera, Md Morshedul Alam, Daisuke Matsumaru, Takuma Suzuki, Fumiki Katsuoka, Shu Tadaka, Ikuko Motoike, Mika Watanabe, Kazuki Hayasaka, Akira Sakurada, Yoshinori Okada, Masayuki Yamamoto, Takashi Suzuki, Kengo Kinoshita, Hiroki Sekine, Hozumi Motohashi
Nature communications 12 (1) 506-506 2021年1月15日
DOI: 10.1038/s41467-021-20927-9
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Estimation of the carrier frequencies and proportions of potential patients by detecting causative gene variants associated with autosomal recessive bone dysplasia using a whole-genome reference panel of Japanese individuals. 国際誌
Shinichi Nagaoka, Yumi Yamaguchi-Kabata, Naomi Shiga, Masahito Tachibana, Jun Yasuda, Shu Tadaka, Gen Tamiya, Nobuo Fuse, Kengo Kinoshita, Shigeo Kure, Jun Murotsuki, Masayuki Yamamoto, Nobuo Yaegashi, Junichi Sugawara
Human genome variation 8 (1) 2-2 2021年1月15日
DOI: 10.1038/s41439-020-00133-7
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jMorp updates in 2020: large enhancement of multi-omics data resources on the general Japanese population. 国際誌
Shu Tadaka, Eiji Hishinuma, Shohei Komaki, Ikuko N Motoike, Junko Kawashima, Daisuke Saigusa, Jin Inoue, Jun Takayama, Yasunobu Okamura, Yuichi Aoki, Matsuyuki Shirota, Akihito Otsuki, Fumiki Katsuoka, Atsushi Shimizu, Gen Tamiya, Seizo Koshiba, Makoto Sasaki, Masayuki Yamamoto, Kengo Kinoshita
Nucleic acids research 49 (D1) D536-D544 2021年1月8日
DOI: 10.1093/nar/gkaa1034
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一般住民バイオバンクの全ゲノム情報を活用したCYP2B6遺伝子多型バリアントの網羅的機能変化解析
平塚 真弘, 田高 周, 木下 賢吾, 平澤 典保, 渡邊 卓嗣, 齋藤 雄大, 菱沼 英史, 公文代 將希, 前川 正充, 小田 彰史, 齋藤 さかえ, 三枝 大輔
日本臨床薬理学会学術総会抄録集 42 2-P-L-2 2021年
出版者・発行元:一般社団法人 日本臨床薬理学会DOI: 10.50993/jsptsuppl.42.0_2-P-L-2
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Novel candidates of pathogenic variants of the BRCA1 and BRCA2 genes from a dataset of 3,552 Japanese whole genomes (3.5KJPNv2). 国際誌
Hideki Tokunaga, Keita Iida, Atsushi Hozawa, Soichi Ogishima, Yoh Watanabe, Shogo Shigeta, Muneaki Shimada, Yumi Yamaguchi-Kabata, Shu Tadaka, Fumiki Katsuoka, Shin Ito, Kazuki Kumada, Yohei Hamanaka, Nobuo Fuse, Kengo Kinoshita, Masayuki Yamamoto, Nobuo Yaegashi, Jun Yasuda
PloS one 16 (1) e0236907 2021年
DOI: 10.1371/journal.pone.0236907
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Identification of critical genetic variants associated with metabolic phenotypes of the Japanese population
Seizo Koshiba, Ikuko N. Motoike, Daisuke Saigusa, Jin Inoue, Yuichi Aoki, Shu Tadaka, Matsuyuki Shirota, Fumiki Katsuoka, Gen Tamiya, Naoko Minegishi, Nobuo Fuse, Kengo Kinoshita, Masayuki Yamamoto
Communications Biology 3 (1) 2020年12月
出版者・発行元:Springer Science and Business Media LLCDOI: 10.1038/s42003-020-01383-5
eISSN:2399-3642
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Enhancer remodeling promotes tumor-initiating activity in NRF2-activated non-small cell lung cancers. 国際誌
Keito Okazaki, Hayato Anzawa, Zun Liu, Nao Ota, Hiroshi Kitamura, Yoshiaki Onodera, Md Morshedul Alam, Daisuke Matsumaru, Takuma Suzuki, Fumiki Katsuoka, Shu Tadaka, Ikuko Motoike, Mika Watanabe, Kazuki Hayasaka, Akira Sakurada, Yoshinori Okada, Masayuki Yamamoto, Takashi Suzuki, Kengo Kinoshita, Hiroki Sekine, Hozumi Motohashi
Nature communications 11 (1) 5911-5911 2020年11月20日
DOI: 10.1038/s41467-020-19593-0
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A genotype imputation method for de-identified haplotype reference information by using recurrent neural network
Kaname Kojima, Shu Tadaka, Fumiki Katsuoka, Gen Tamiya, Masayuki Yamamoto, Kengo Kinoshita
PLOS Computational Biology 16 (10) e1008207-e1008207 2020年10月1日
出版者・発行元:Public Library of Science (PLoS)DOI: 10.1371/journal.pcbi.1008207
eISSN:1553-7358
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Novel candidates of pathogenic variants of the BRCA1 and BRCA2 genes in a 3,552 Japanese whole-genome sequence dataset (3.5KJPNv2) 査読有り
Hideki Tokunaga, Keita Iida, Atsushi Hozawa, Soichi Ogishima, Yoh Watanabe, Shogo Shigeta, Muneaki Shimada, Yumi Yamaguchi-Kabata, Shu Tadaka, Fumiki Katsuoka, Shin Ito, Kazuki Kumada, Yohei Hamanaka, Nobuo Fuse, Kengo Kinoshita, Masayuki Yamamoto, Nobuo Yaegashi, Jun Yasuda
2020年7月17日
出版者・発行元:Cold Spring Harbor LaboratoryDOI: 10.1101/2020.07.17.208454
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Pathogenic mutations identified by a multimodality approach in 117 Japanese Fanconi anemia patients. 国際誌 査読有り
Minako Mori, Asuka Hira, Kenichi Yoshida, Hideki Muramatsu, Yusuke Okuno, Yuichi Shiraishi, Michiko Anmae, Jun Yasuda, Shu Tadaka, Kengo Kinoshita, Tomoo Osumi, Yasushi Noguchi, Souichi Adachi, Ryoji Kobayashi, Hiroshi Kawabata, Kohsuke Imai, Tomohiro Morio, Kazuo Tamura, Akifumi Takaori-Kondo, Masayuki Yamamoto, Satoru Miyano, Seiji Kojima, Etsuro Ito, Seishi Ogawa, Keitaro Matsuo, Hiromasa Yabe, Miharu Yabe, Minoru Takata
Haematologica 105 (4) 1166-1167 2020年4月
DOI: 10.3324/haematol.2019.245720
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Construction and Integration of Three De Novo Japanese Human Genome Assemblies toward a Population-Specific Reference 査読有り
Jun Takayama, Shu Tadaka, Kenji Yano, Fumiki Katsuoka, Chinatsu Gocho, Takamitsu Funayama, Satoshi Makino, Yasunobu Okamura, Atsuo Kikuchi, Junko Kawashima, Akihito Otsuki, Jun Yasuda, Shigeo Kure, Kengo Kinoshita, Masayuki Yamamoto, Gen Tamiya
2019年12月2日
出版者・発行元:Cold Spring Harbor LaboratoryDOI: 10.1101/861658
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Pathogenic mutations identified by a multimodality approach in 117 Japanese Fanconi anemia patients. 国際誌 査読有り
Minako Mori, Asuka Hira, Kenichi Yoshida, Hideki Muramatsu, Yusuke Okuno, Yuichi Shiraishi, Michiko Anmae, Jun Yasuda, Shu Tadaka, Kengo Kinoshita, Tomoo Osumi, Yasushi Noguchi, Souichi Adachi, Ryoji Kobayashi, Hiroshi Kawabata, Kohsuke Imai, Tomohiro Morio, Kazuo Tamura, Akifumi Takaori-Kondo, Masayuki Yamamoto, Satoru Miyano, Seiji Kojima, Etsuro Ito, Seishi Ogawa, Keitaro Matsuo, Hiromasa Yabe, Miharu Yabe, Minoru Takata
Haematologica 104 (10) 1962-1973 2019年10月
出版者・発行元:Ferrata Storti Foundation (Haematologica)DOI: 10.3324/haematol.2018.207241
ISSN:0390-6078
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コホート調査における代謝プロファイルの経時変化の解析
小柴 生造, 元池 育子, 三枝 大輔, 井上 仁, 菱沼 英史, 青木 裕一, 田高 周, 城田 松之, 木下 賢吾, 山本 雅之
日本生化学会大会プログラム・講演要旨集 92回 [1T12a-04] 2019年9月
出版者・発行元:(公社)日本生化学会 -
Estimating carrier frequencies of newborn screening disorders using a whole-genome reference panel of 3552 Japanese individuals. 国際誌 査読有り
Human genetics 138 (4) 389-409 2019年3月
DOI: 10.1007/s00439-019-01998-7
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Genome analyses for the Tohoku Medical Megabank Project towards establishment of personalized healthcare. 国際誌 査読有り
Jun Yasuda, Kengo Kinoshita, Fumiki Katsuoka, Inaho Danjoh, Mika Sakurai-Yageta, Ikuko N Motoike, Yoko Kuroki, Sakae Saito, Kaname Kojima, Matsuyuki Shirota, Daisuke Saigusa, Akihito Otsuki, Junko Kawashima, Yumi Yamaguchi-Kabata, Shu Tadaka, Yuichi Aoki, Takahiro Mimori, Kazuki Kumada, Jin Inoue, Satoshi Makino, Miho Kuriki, Nobuo Fuse, Seizo Koshiba, Osamu Tanabe, Masao Nagasaki, Gen Tamiya, Ritsuko Shimizu, Takako Takai-Igarashi, Soichi Ogishima, Atsushi Hozawa, Shinichi Kuriyama, Junichi Sugawara, Akito Tsuboi, Hideyasu Kiyomoto, Tadashi Ishii, Hiroaki Tomita, Naoko Minegishi, Yoichi Suzuki, Kichiya Suzuki, Hiroshi Kawame, Hiroshi Tanaka, Yasuyuki Taki, Nobuo Yaegashi, Shigeo Kure, Fuji Nagami, Kenjiro Kosaki, Yoichi Sutoh, Tsuyoshi Hachiya, Atsushi Shimizu, Makoto Sasaki, Masayuki Yamamoto
Journal of biochemistry 165 (2) 139-158 2019年2月1日
DOI: 10.1093/jb/mvy096
ISSN:0021-924X
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3.5KJPNv2: an allele frequency panel of 3552 Japanese individuals including the X chromosome. 国際誌 査読有り
Shu Tadaka, Fumiki Katsuoka, Masao Ueki, Kaname Kojima, Satoshi Makino, Sakae Saito, Akihito Otsuki, Chinatsu Gocho, Mika Sakurai-Yageta, Inaho Danjoh, Ikuko N Motoike, Yumi Yamaguchi-Kabata, Matsuyuki Shirota, Seizo Koshiba, Masao Nagasaki, Naoko Minegishi, Atsushi Hozawa, Shinichi Kuriyama, Atsushi Shimizu, Jun Yasuda, Nobuo Fuse, Gen Tamiya, Masayuki Yamamoto, Kengo Kinoshita
Human genome variation 6 28-28 2019年
DOI: 10.1038/s41439-019-0059-5
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3.5KJPNv2: an allele frequency panel of 3552 Japanese individuals including the X chromosome. 国際誌
Shu Tadaka, Fumiki Katsuoka, Masao Ueki, Kaname Kojima, Satoshi Makino, Sakae Saito, Akihito Otsuki, Chinatsu Gocho, Mika Sakurai-Yageta, Inaho Danjoh, Ikuko N Motoike, Yumi Yamaguchi-Kabata, Matsuyuki Shirota, Seizo Koshiba, Masao Nagasaki, Naoko Minegishi, Atsushi Hozawa, Shinichi Kuriyama, Atsushi Shimizu, Jun Yasuda, Nobuo Fuse, Gen Tamiya, Masayuki Yamamoto, Kengo Kinoshita
Human genome variation 6 28-28 2019年
出版者・発行元:Cold Spring Harbor LaboratoryDOI: 10.1038/s41439-019-0059-5
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COXPRESdb v7: a gene coexpression database for 11 animal species supported by 23 coexpression platforms for technical evaluation and evolutionary inference 査読有り
Takeshi Obayashi, Yuki Kagaya, Yuichi Aoki, Shu Tadaka, Kengo Kinoshita
Nucleic Acids Research 2018年11月
出版者・発行元:Oxford University Press ({OUP})DOI: 10.1093/nar/gky1155
ISSN:0305-1048
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メタボロームGWASによる日本人の代謝プロファイルの解析
小柴 生造, 元池 育子, 三枝 大輔, 井上 仁, 青木 裕一, 田高 周, 城田 松之, 木下 賢吾, 山本 雅之
日本生化学会大会プログラム・講演要旨集 91回 [3T14a-314)] 2018年9月
出版者・発行元:(公社)日本生化学会 -
Regional genetic differences among Japanese populations and performance of genotype imputation using whole-genome reference panel of the Tohoku Medical Megabank Project. 国際誌 査読有り
Jun Yasuda, Fumiki Katsuoka, Inaho Danjoh, Yosuke Kawai, Kaname Kojima, Masao Nagasaki, Sakae Saito, Yumi Yamaguchi-Kabata, Shu Tadaka, Ikuko N Motoike, Kazuki Kumada, Mika Sakurai-Yageta, Osamu Tanabe, Nobuo Fuse, Gen Tamiya, Koichiro Higasa, Fumihiko Matsuda, Nobufumi Yasuda, Motoki Iwasaki, Makoto Sasaki, Atsushi Shimizu, Kengo Kinoshita, Masayuki Yamamoto
BMC genomics 19 (1) 551-551 2018年7月24日
出版者・発行元:Springer NatureDOI: 10.1186/s12864-018-4942-0
ISSN:1471-2164
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ゲノミクスを基盤とした生活習慣病解析最前線 ゲノム情報と連携した日本人多層オミックス参照パネルの意義
小柴 生造, 元池 育子, 三枝 大輔, 井上 仁, 城田 松之, 青木 裕一, 田高 周, 斎藤 智, 木下 賢吾, 山本 雅之
糖尿病 61 (Suppl.1) S-48 2018年4月
出版者・発行元:(一社)日本糖尿病学会ISSN:0021-437X
eISSN:1881-588X
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jMorp: Japanese Multi Omics Reference Panel. 国際誌 査読有り
Shu Tadaka, Daisuke Saigusa, Ikuko N Motoike, Jin Inoue, Yuichi Aoki, Matsuyuki Shirota, Seizo Koshiba, Masayuki Yamamoto, Kengo Kinoshita
Nucleic acids research 46 (D1) D551-D557 2018年1月4日
出版者・発行元:Oxford University Press ({OUP})DOI: 10.1093/nar/gkx978
ISSN:0305-1048
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ATTED-II in 2018: A Plant Coexpression Database Based on Investigation of the Statistical Property of the Mutual Rank Index 査読有り
Takeshi Obayashi, Yuichi Aoki, Shu Tadaka, Yuki Kagaya, Kengo Kinoshita
Plant and Cell Physiology 59 (2) 440 2018年1月
出版者・発行元:Oxford University Press ({OUP})DOI: 10.1093/pcp/pcx209
ISSN:0032-0781
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ATTED-II in 2018: A Plant Coexpression Database Based on Investigation of the Statistical Property of the Mutual Rank Index 査読有り
Takeshi Obayashi, Yuichi Aoki, Shu Tadaka, Yuki Kagaya, Kengo Kinoshita
Plant and Cell Physiology 59 (1) e3 2017年
出版者・発行元:Oxford University Press ({OUP})DOI: 10.1093/pcp/pcx191
ISSN:0032-0781
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NCMine: Core-peripheral based functional module detection using near-clique mining 査読有り
Shu Tadaka, Kengo Kinoshita
BIOINFORMATICS 32 (22) 3454-3460 2016年11月
出版者・発行元:OXFORD UNIV PRESSDOI: 10.1093/bioinformatics/btw488
ISSN:1367-4803
eISSN:1460-2059
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ATTED-II in 2016: A Plant Coexpression Database Towards Lineage-Specific Coexpression 査読有り
Yuichi Aoki, Yasunobu Okamura, Shu Tadaka, Kengo Kinoshita, Takeshi Obayashi
PLANT AND CELL PHYSIOLOGY 57 (1) e5 2016年1月
出版者・発行元:OXFORD UNIV PRESSDOI: 10.1093/pcp/pcv165
ISSN:0032-0781
eISSN:1471-9053
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COXPRESdb in 2015: Coexpression database for animal species by DNA-microarray and RNAseq-based expression data with multiple quality assessment systems 査読有り
Yasunobu Okamura, Yuichi Aoki, Takeshi Obayashi, Shu Tadaka, Satoshi Ito, Takafumi Narise, Kengo Kinoshita
Nucleic Acids Research 43 (1) D82-D86 2015年1月28日
出版者・発行元:Oxford University PressDOI: 10.1093/nar/gku1163
ISSN:1362-4962 0305-1048
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COXPRESdb in 2015: coexpression database for animal species by DNA-microarray and RNAseq-based expression data with multiple quality assessment systems 査読有り
Yasunobu Okamura, Yuichi Aoki, Takeshi Obayashi, Shu Tadaka, Satoshi Ito, Takafumi Narise, Kengo Kinoshita
NUCLEIC ACIDS RESEARCH 43 (D1) D82-D86 2015年1月
出版者・発行元:OXFORD UNIV PRESSDOI: 10.1093/nar/gku1163
ISSN:0305-1048
eISSN:1362-4962
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Toshiaki Katayama, Mark D. Wilkinson, Kiyoko F. Aoki-Kinoshita, Shuichi Kawashima, Yasunori Yamamoto, Atsuko Yamaguchi, Shinobu Okamoto, Shin Kawano, Jin-Dong Kim, Yue Wang, Hongyan Wu, Yoshinobu Kano, Hiromasa Ono, Hidemasa Bono, Simon Kocbek, Jan Aerts, Yukie Akune, Erick Antezana, Kazuharu Arakawa, Bruno Aranda, Joachim Baran, Jerven Bolleman, Raoul J. P. Bonnal, Pier Luigi Buttigieg, Matthew P. Campbell, Yi-an Chen, Hirokazu Chiba, Peter J. A. Cock, K. Bretonnel Cohen, Alexandru Constantin, Geraint Duck, Michel Dumontier, Takatomo Fujisawa, Toyofumi Fujiwara, Naohisa Goto, Robert Hoehndorf, Yoshinobu Igarashi, Hidetoshi Itaya, Maori Ito, Wataru Iwasaki, Matus Kalas, Takeo Katoda, Taehong Kim, Anna Kokubu, Yusuke Komiyama, Masaaki Kotera, Camille Laibe, Hilmar Lapp, Thomas Luetteke, M. Scott Marshall, Takaaki Mori, Hiroshi Mori, Mizuki Morita, Katsuhiko Murakami, Mitsuteru Nakao, Hisashi Narimatsu, Hiroyo Nishide, Yosuke Nishimura, Johan Nystrom-Persson, Soichi Ogishima, Yasunobu Okamura, Shujiro Okuda, Kazuki Oshita, Nicki H. Packer, Pjotr Prins, Rene Ranzinger, Philippe Rocca-Serra, Susanna Sansone, Hiromichi Sawaki, Sung-Ho Shin, Andrea Splendiani, Francesco Strozzi, Shu Tadaka, Philip Toukach, Ikuo Uchiyama, Masahito Umezaki, Rutger Vos, Patricia L. Whetzel, Issaku Yamada, Chisato Yamasaki, Riu Yamashita, William S. York, Christian M. Zmasek, Shoko Kawamoto, Toshihisa Takagi
JOURNAL OF BIOMEDICAL SEMANTICS 5 (1) 5 2014年2月
出版者・発行元:BMCISSN:2041-1480
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ATTED-II in 2014: evaluation of gene coexpression in agriculturally important plants. 査読有り
Obayashi T, Okamura Y, Ito S, Tadaka S, Aoki Y, Shirota M, Kinoshita K
Plant & cell physiology 55 (1) e6 2014年1月
DOI: 10.1093/pcp/pct178
ISSN:0032-0781
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ATTED-II in 2014: Evaluation of gene coexpression in agriculturally important plants 査読有り
Takeshi Obayashi, Yasunobu Okamura, Satoshi Ito, Shu Tadaka, Yuichi Aoki, Matsuyuki Shirota, Kengo Kinoshita
Plant and Cell Physiology 55 (1) e6 2014年1月
出版者・発行元:Oxford University Press ({OUP})DOI: 10.1093/pcp/pct178
ISSN:0032-0781 1471-9053
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COXPRESdb: a database of comparative gene coexpression networks of eleven species for mammals 査読有り
Takeshi Obayashi, Yasunobu Okamura, Satoshi Ito, Shu Tadaka, Ikuko N. Motoike, Kengo Kinoshita
NUCLEIC ACIDS RESEARCH 41 (D1) D1014-D1020 2013年1月
出版者・発行元:OXFORD UNIV PRESSDOI: 10.1093/nar/gks1014
ISSN:0305-1048
MISC 7
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日本人8,380人の全ゲノム解析から同定されたCYP2B6レアバリアントの酵素機能変化解析
山崎柊紀, 菱沼英史, 菱沼英史, 上田昭子, 前川正充, 前川正充, 前川正充, 佐藤裕, 公文代將希, 眞野成康, 眞野成康, 仲吉朝希, 小田彰史, 齋藤さかえ, 齋藤さかえ, 田高周, 田高周, 木下賢吾, 木下賢吾, 木下賢吾, 平澤典保, 平澤典保, 平澤典保, 平塚真弘, 平塚真弘, 平塚真弘, 平塚真弘
日本薬学会年会要旨集(Web) 143rd 2023年
ISSN:0918-9823
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日本薬学会東北支部大会講演要旨集 62nd 2023年
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日本生化学会大会(Web) 94th 2021年
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臨床薬理 51 (Supplement) 2020年
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ISSN:1881-588X
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Identification of functional modules in protein networks by near-clique detection
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研究報告バイオ情報学(BIO) 2013 (4) 1-2 2013年3月14日
共同研究・競争的資金等の研究課題 2
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平良 摩紀子, 布施 昇男, 川崎 良, 三木 篤也, 小島 要, 田高 周
2021年4月1日 ~ 2024年3月31日
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鈴木 吉也, 黒木 陽子, 立花 眞仁, 勝岡 史城, 田高 周, 栗山 進一, 長崎 正朗
提供機関:Japan Society for the Promotion of Science
制度名:Grants-in-Aid for Scientific Research
研究種目:Grant-in-Aid for Scientific Research (B)
研究機関:Tohoku University
2018年4月1日 ~ 2021年3月31日